BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496800
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65670.1 | Symbols: IAA9 | indole-3-acetic acid inducible 9 ... 2529 0.0
> AT5G65670.1 | Symbols: IAA9 | indole-3-acetic acid inducible
9 | chr5:26253658-26256468 FORWARD LENGTH=1624
Length=1624
Score = 2529 bits (1369), Expect = 0.0
Identities = 1553/1638 (95%), Gaps = 28/1638 (2%)
Strand=Plus/Plus
Query 1 TTTTAATCTCGGCTACGAGTTTCTGGGTGATGATACTTAAGCttttttttGCTTTAATGG 60
|||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||
Sbjct 3 TTTTAATCTCGGCTACGAGTTTCTGGGTAATGATAATTAAGCTTTTTTCTGCTTTAATGG 62
Query 61 AAGGACCTTGACACTTCTCTCTCTCCCTTTCTCTTTGCTATTCATCTTCTACAGTTTCAT 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 63 AAGGACCTTGACACTTCTCTCTCT--CTTTCTCTTTGCTATTCATCTTCTACAGTTTCTT 120
Query 121 AAAAATTATTCTCTTCTTCTCCAAAATATCTGTGA--CTC-TAATTTTGATCGTCTTCTT 177
||||||||| ||||||||||||||||||||| || ||| || ||||||||||||||||
Sbjct 121 AAAAATTATACTCTTCTTCTCCAAAATATCTCAGACTCTCTTATTTTTGATCGTCTTCTT 180
Query 178 CTTCGTC--T-TCAGCTTCCATTTTTCCATCAACGATTTG-TTTTTCCCTTGAGCAGGT- 232
|||| || | | ||||||||||||| |||| | |||||| ||||||| || | ||||
Sbjct 181 CTTCTTCGTTGTGAGCTTCCATTTTT-CATCCAGGATTTGTTTTTTCCGTT-TG-AGGTA 237
Query 233 AATCAGCTTTGCAGTTGAAGAAACCTCAAGTATCCAATGTCTACGGAAGAGGAGCTACAG 292
|| ||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||
Sbjct 238 AAGCAGCTTTGCAGTTAAAGAAACCTTGAGTATCCAATGTCCCCGGAAGAGGAGCTACAG 297
Query 293 AGCAATGTCTCTGTGGCAAGTTCTTCACCTACTAGCAATTGTATCTCCAGGAACACTCTA 352
|||||||| || ||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 298 AGCAATGTATCGGTGGCTAGTTCTTCACCTACTAGCAATTGCATCTCCAGGAACACTCTA 357
Query 353 GGTGGACTTAAAGAGCATAACTACTTGGGTCTCTCTGATTGTTCTTCTGTTGGAAGCTCC 412
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGAGGACTTAAAGAGCATAACTACTTGGGTCTCTCTGATTGTTCTTCTGTTGGAAGCTCT 417
Query 413 ACTCTCTCGCTCCTTGCTGAAGATGACAAAGCTACTATCAGCCTCAAGGCTACGGAGCTG 472
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ACTCTCTCTCCCCTTGCTGAAGATGACAAAGCTACTATCAGCCTCAAGGCTACGGAGCTG 477
Query 473 ACACTTGGTCTTCCTGGATCACAATCTCCTGCGAGAGACACAGAGCTTAACCTTTTGAGC 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ACACTTGGTCTTCCTGGATCACAATCTCCTGCGAGAGACACAGAGCTTAACCTTTTGAGC 537
Query 533 CCAGCAAAGCTCGATGAGAAGCCATTCTTTCCTTTGCTTCCTTCTAAAGATGAGATATGC 592
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CCAGCAAAGCTAGATGAGAAGCCATTCTTTCCTTTGCTTCCTTCTAAAGATGAGATATGC 597
Query 593 TCGTCCTCGCAAAAGAACAATGCATCCGGAAACAAAAGAGGCTTTTCTGATACAATGGAT 652
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 598 TCCTCCTCGCAAAAGAACAATGCATCGGGAAACAAAAGAGGCTTTTCTGACACAATGGAT 657
Query 653 CAGTTTGCTGAAGCTAAAAGTTCAGTCTATACTGAGAAAAACTGGATGTTCCCTGAAGCT 712
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 658 CAGTTTGCTGAAGCTAAAAGTTCAGTGTATACTGAGAAAAACTGGATGTTCCCTGAAGCA 717
Query 713 GCAGCCACCCAGTCTGTAACAAAGAAGGATGTGCCACAAAACATACCGAAAGGACAGTCG 772
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 718 GCAGCCACCCAGTCTGTAACAAAGAAAGATGTGCCACAAAACATACCCAAAGGACAGTCT 777
Query 773 AGCACTACAAACAATAGCTCTAGTCCACCTGCAGCCAAGGCACAAATTGTCGGTTGGCCT 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AGCACTACAAACAATAGCTCTAGTCCACCTGCAGCCAAGGCACAAATTGTCGGTTGGCCT 837
Query 833 CCTGTGAGATCCTACAGGAAGAACACATTGGCCACTACTTGTAAGAACAGTGATGAAGTT 892
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 838 CCAGTGAGATCCTACAGGAAGAACACATTGGCCACTACTTGTAAGAACAGTGACGAAGTT 897
Query 893 GATGGGAGGCCAGGTTTTGGGGCCCTCTTCGTGAAGGTCAGTATGGATGGTGCTCCTTAT 952
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 898 GATGGGAGGCCAGGTTCTGGGGCTCTCTTCGTGAAGGTCAGTATGGATGGTGCTCCTTAT 957
Query 953 CTGAGGAAAGTTGACCTGAGGAGCTACGCTAACTACGGGGAGCTTTCTTCAGCCTTGGAG 1012
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 958 CTGAGGAAAGTTGACCTGAGGAGCTACACTAACTACGGGGAGCTTTCTTCAGCCTTGGAG 1017
Query 1013 AAAATGTTCACCACTTTCACTCTAGGTCAATGTGGATCTAATGGAGCTGCTGGGAAGGAT 1072
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1018 AAAATGTTCACCACTTTCACTCTTGGTCAATGTGGATCTAATGGAGCTGCTGGGAAGGAT 1077
Query 1073 ATGCTTAGTGAGACCAAGCTTAAGGATCTTTTGAATGGAAAAGACTATGTGCTCACTTAT 1132
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ATGCTTAGTGAGACCAAGCTCAAGGATCTTTTGAATGGAAAAGACTATGTGCTCACTTAT 1137
Query 1133 GAGGATAAGGATGGGGACTGGATGCTTGTTGGAGATGTTCCATGGGAGATGTTTATTGAT 1192
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1138 GAGGATAAGGATGGTGACTGGATGCTTGTTGGAGATGTTCCGTGGGAGATGTTTATTGAT 1197
Query 1193 GTCTGCAAGAAGCTGAAGATAATGAAAGGATGTGATGCTATTGGGTTAGCTGCAGCTCCG 1252
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1198 GTCTGCAAGAAGCTGAAGATAATGAAAGGGTGTGATGCTATTGGGTTAGCTGCAGCTCCG 1257
Query 1253 AGAGCAATGGAGAAATCGAAGATGAGAGCTTAAAAGATGGAACATGACAAAGCTTTCTAA 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 AGAGCAATGGAGAAATCGAAGATGAGAGCTTAAAAGATGGAACATGACAAAGCTTTCTAA 1317
Query 1313 TTATACAAAATATGTGCGATCTTTTGGTGGTGTTTTTAAATTTCAAAACATCAATATCTT 1372
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CTATACAAAATATGTGCGATCTTTTGGTGGTGTTTTTAAATTTCAAAACATCAATATCTT 1377
Query 1373 TTAAGTTTCTGAGATTTTAAAAA-GAAGTAAGTAAGACTACGAATGTAAGGAAATGAAGA 1431
| | |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1378 T-A-GTTTCTGA-ATTTTTAAAATGAAGTAAGTAAGACTACGAATGTAAGGAAATGAAGA 1434
Query 1432 AGAATTAAAAATGATCTTATTTTTGTTGTT-GTTTGTTGCTTTAGTCGAACCAGTAAACT 1490
||||||||||||||||| |||||||||||| |||||||||||||||| | |||||||
Sbjct 1435 AGAATTAAAAATGATCT-ATTTTTGTTGTTTGTTTGTTGCTTTAGTC-A----GTAAACT 1488
Query 1491 GGTCGTTGTTTTATGTTTTGGGTTTGATTTGGATGTGTGGTTGACTTCTATCTTTGAGAT 1550
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1489 GGTCGTTGTTTTATGTTTTGTGTTTGATTTGGATGTGTGGTTGACTTCTACCTTTGAGAT 1548
Query 1551 ATTATTTGATGTAACTCTCttttttt-tt-tCTTCTTTGCTTCTTCTCGAGTAGTGAAGG 1608
||||||||||||||| | |||| || || ||||||||||||||||||||| || ||||
Sbjct 1549 ATTATTTGATGTAACG-T-TTTTGTTATTCTCTTCTTTGCTTCTTCTCGAGAAGAGAAGA 1606
Query 1609 TAGACAATCCGATTTTAC 1626
||||||||||| ||||||
Sbjct 1607 TAGACAATCCGGTTTTAC 1624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80320872000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5