BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496808
Length=2988
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65710.1 | Symbols: HSL2 | HAESA-like 2 | chr5:26292372-2629... 4512 0.0
> AT5G65710.1 | Symbols: HSL2 | HAESA-like 2 | chr5:26292372-26295440
FORWARD LENGTH=2982
Length=2982
Score = 4512 bits (2443), Expect = 0.0
Identities = 2801/2977 (94%), Gaps = 11/2977 (0%)
Strand=Plus/Plus
Query 16 ACTActctcttctt-gttcatctctctaattcttctttcttgttttctccaagtttcttc 74
|||| ||||||||| ||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 13 ACTAATCTCTTCTTCTTTC-TCTCTTTACTTCTTCTTTCTTGTTTTCTCCAAGTTTCTTC 71
Query 75 CAATGGAGACGCTGAGATACTGAGTCGGGTTAAAAAGACCCGACTTTTCGACCCCGATGG 134
||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct 72 CAATGGAGACGCTGAGATATTGAGTAGAGTTAAAAAGACCCGACTTTTCGACCCCGATGG 131
Query 135 AAATTTACAAGATTGGGTCATAACCGGAGATAATCGGAGTCCGTGTAATTGGACGGGAAT 194
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 132 AAATTTACAAGATTGGGTCATAACCGGAGATAATCGGAGTCCATGTAATTGGACGGGAAT 191
Query 195 CACATGCGACATCAGAAAAGGTAGCTCCCTCGCCGTCACGGCCATTGATCTCTCAGGCTA 254
||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 192 CACATGCCACATCAGAAAAGGTAGCTCCCTCGCCGTCACTACCATTGATCTCTCCGGCTA 251
Query 255 TAATATCTCCGGTGGGTTTCCTTACGGATTCTGTCGTATCCGTACACTCATCAACATCAC 314
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 252 TAATATCTCCGGTGGCTTTCCCTACGGATTCTGTCGTATCCGTACACTCATCAACATCAC 311
Query 315 TCTTTCTCAAAACAATCTCAACGGTACGATTGATTCTGGTCCTCTCTCGCTCTGTTCTAA 374
||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||
Sbjct 312 TCTTTCTCAAAACAATCTCAATGGTACGATTGATTCTGCTCCTCTCTCCCTCTGTTCTAA 371
Query 375 AATTCAGGTTTTGATCCTCAATGTAAACAACTTCTCCGGTAAATTACCGGAATTCTCGCC 434
| ||||| |||||| |||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 372 ACTTCAGAATTTGATTCTCAATCAAAACAACTTCTCCGGTAAATTACCGGAATTCTCACC 431
Query 435 GGACTTTCGTAATTTACGCGTCCTCGAATTGGAATCAAACCTGTTCACCGGCGAAATTCC 494
||| |||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||
Sbjct 432 GGAGTTTCGTAAATTACGAGTCCTCGAATTGGAATCAAACCTCTTCACCGGTGAGATTCC 491
Query 495 TCAAAGTTACGGGAGATTTAAC-GCTTTGCAAGTTCTGAACCTTAACGGCAACCCGCTCA 553
|||||||||||||||| | || ||| ||||||||||||| ||||| || ||||||||||
Sbjct 492 TCAAAGTTACGGGAGA-CTCACTGCTCTGCAAGTTCTGAATCTTAATGGTAACCCGCTCA 550
Query 554 GTGGAATCGTTCCGGCGTTTCTGGGTAATCTGACTGAGTTAACTCGTCTTGATCTCGCTT 613
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 551 GTGGAATCGTTCCGGCGTTTTTGGGTTATCTGACTGAGTTAACTCGTCTTGATCTCGCTT 610
Query 614 ACATCAGTTTTGATTCTGGTCCGATTCCATCAACCTTCGGGAACTTGACGAATTTGACTG 673
|||||||||||||| || ||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct 611 ACATCAGTTTTGATCCTAGTCCGATTCCATCAACCTTGGGGAACTTGTCGAATCTGACTG 670
Query 674 AACTTCGGCTAACTCACTCGAACCTCGTCGGAGAAATTCCTGATTCGATCATGAATCTGG 733
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 ATCTTCGGCTAACTCACTCGAACCTCGTCGGAGAAATTCCTGATTCGATCATGAATCTGG 730
Query 734 TGTTGTTAGAGAATCTCGATTTGGCTATGAATGGTCTCACCGGAGAAATACCTGAGAGTA 793
|||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 731 TGTTGTTAGAGAATCTTGATTTAGCTATGAATAGTCTCACCGGAGAAATACCTGAGAGTA 790
Query 794 TCGGACGACTCGAATCGGTTTATCAGATTGAGCTCTACGATAATCGGTTATCTGGAAAAT 853
||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 791 TCGGAAGACTCGAATCGGTTTACCAGATTGAGCTCTACGATAACCGGTTATCTGGAAAAT 850
Query 854 TGCCGGAGAGTATCGGAAATTTAACCGAATTGAGGAATTTTGATGTATCGCAGAATAATC 913
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 851 TACCGGAGAGTATCGGAAATTTAACCGAATTGAGGAATTTTGATGTCTCGCAGAATAATC 910
Query 914 TCACCGGTGAATTGCCGGAAAAGATCGCTGCTCTGCAACTTATCTCTTTCAATCTCAATG 973
| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 TAACCGGTGAACTACCGGAAAAGATCGCTGCTCTGCAACTTATCTCTTTCAATCTCAATG 970
Query 974 ATAATTTCTTCACCGGCGAATTACCAGATGTCGTAGCTTTGAATCCTAATCTCGTCGAAT 1033
|||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||
Sbjct 971 ATAATTTCTTCACCGGAGGATTACCAGATGTCGTAGCTTTGAATCCTAATCTCGTTGAAT 1030
Query 1034 TCAAGATCTTCAACAACAGTTTCACGGGGACGTTACCTAGTAATCTCGGAAAATTCTCAG 1093
|||| |||||||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 1031 TCAAAATCTTCAACAACAGTTTCACGGGGACGTTACCAAGGAATCTCGGGAAATTCTCAG 1090
Query 1094 AACTATCTGAAATCGATGTCTCGACGAACAGATTCACCGGCGAATTGCCGCCGTATCTCT 1153
|| | |||||| ||||||||||||||||||||||| |||| ||||||||||||||| | |
Sbjct 1091 AAATCTCTGAATTCGATGTCTCGACGAACAGATTCTCCGGTGAATTGCCGCCGTATTTGT 1150
Query 1154 GCTACAGAAGAAAACTTCAAAAGATCATCACCTTCAGCAATCAATTGAGTGGCGAAATTC 1213
||||||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||
Sbjct 1151 GCTACAGAAGAAAACTTCAGAAGATTATCACCTTCAGCAATCAATTAAGCGGCGAAATTC 1210
Query 1214 CGGAAGCTTACGGCGATTGTCATTCGCTTAATTACATCCGAATGGCGGATAACAAACTCT 1273
||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1211 CGGAATCTTACGGCGATTGTCATTCGCTTAATTACATTCGTATGGCGGATAACAAACTCT 1270
Query 1274 CCGGCGAAGTTCCGGCTAGGTTTTGGGAACTTCCTCTTACTCGTCTCGAGCTAGCCAACA 1333
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1271 CCGGCGAAGTTCCGGCTAGGTTTTGGGAACTTCCTCTTACTCGTCTTGAGCTAGCCAACA 1330
Query 1334 ACAATCAATTAGAAGGTTCGATTCCTCCTTCGATTTCCAAAGCTCGTCATCTATCTCAGC 1393
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 ACAATCAATTACAAGGTTCGATTCCTCCTTCGATTTCCAAAGCTCGTCATCTATCTCAGC 1390
Query 1394 TCGAAATCTCCGATAACAACTTCTCCGGTGTGATTCCCGTCAAAATCTGTGATCTCCGTG 1453
| |||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1391 TTGAAATCTCCGCTAACAACTTCTCCGGTGTGATTCCCGTCAAACTTTGTGATCTCCGTG 1450
Query 1454 ATCTCAGAGTCATCGATCTTAGCCGCAACCGTTTCTCAGGCCCTCTTCCGCCTTGCATCA 1513
||||||||||||||||||||||||||||| |||||| ||| | ||||| |||||||||
Sbjct 1451 ATCTCAGAGTCATCGATCTTAGCCGCAACAGTTTCTTAGGATCAATTCCGTCTTGCATCA 1510
Query 1514 ACAAATTGAAGAATCTAGAGAGATTGGAGATGCAGGAGAACATGCTCGACGGCGAGATTC 1573
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1511 ACAAATTGAAGAATCTAGAGAGAGTAGAGATGCAGGAGAACATGCTCGACGGCGAGATTC 1570
Query 1574 CTAGTTCAGTGAGTTCGTGCACCGAGTTAGCCGAGTTAAATCTCTCGAACAACCGTTTAC 1633
| ||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||
Sbjct 1571 CGAGTTCAGTGAGTTCGTGCACCGAGTTAACCGAATTAAATCTCTCCAACAACCGTTTAC 1630
Query 1634 GCGGCGGAATTCCACCGGAGCTCGGTGATTTACCGGTTTTAAACTATCTGGATCTCTCCA 1693
| ||||| || |||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 1631 GAGGCGGGATACCACCGGAACTCGGTGATTTACCGGTTTTAAACTACCTGGATCTCTCTA 1690
Query 1694 ACAACCAACTCACCGGTGAGATTCCGGCGGAGCTGTTGAGGCTGAAGCTTAATCAATTCA 1753
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1691 ACAACCAACTCACCGGTGAGATTCCGGCGGAGCTGTTGAGGCTCAAGCTTAATCAATTCA 1750
Query 1754 ACGTCTCCGATAACAAACTCTACGGTAAGATCCCTTCTGGATTTCAGCAAGATATTTTTC 1813
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1751 ACGTCTCCGATAACAAACTCTATGGTAAGATTCCTTCTGGATTTCAGCAAGATATTTTTC 1810
Query 1814 GACCCAGTTTCTTGGGTAACCCGAATCTCTGTGCCCCGAATTTGGATCCGATTCGACCTT 1873
||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1811 GACCCAGTTTCTTAGGTAACCCGAATCTCTGTGCCCCAAATTTGGATCCGATTAGACCTT 1870
Query 1874 GCCGATCCAAACCAGAAACCCGGTACATCCTTGTGATATCAATCATCTGCATCGTTGCAC 1933
|||||||||||| |||||||||||||| || || |||||| |||||||||||||||
Sbjct 1871 GCCGATCCAAACGGGAAACCCGGTACATTCTCCCAATCTCAATCCTCTGCATCGTTGCAC 1930
Query 1934 TAACCGGAGCTTTGGTTTGGCTGTTCATCAAAACCAAACCGTTATTCAAGAGAAAACCGA 1993
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1931 TAACCGGAGCTTTGGTTTGGCTATTCATCAAAACCAAACCGTTATTCAAGAGAAAACCGA 1990
Query 1994 AACGGACCAATAAAATAACCATTTTTCAACGGGTCGGGTTCACGGAGGAAGACATATACC 2053
|||||||||| ||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 1991 AACGGACCAACAAAATAACCATCTTCCAGCGGGTCGGGTTCACGGAGGAAGACATATACC 2050
Query 2054 CGCAATTAACAGAAGATAACATAATCGGATCAGGCGGGTCGGGTTTGGTTTACAGAGTAA 2113
||||||||||||||||||||||||| || || |||||||||||||||||||| ||||| |
Sbjct 2051 CGCAATTAACAGAAGATAACATAATTGGGTCGGGCGGGTCGGGTTTGGTTTATAGAGTGA 2110
Query 2114 AACTCAAATCAGGTCAAACGCTTGCGGTTAAGAAACTCTGGGGAGGATCGGGTCAAAAGC 2173
|||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||
Sbjct 2111 AACTCAAATCAGGTCAAACGCTTGCGGTGAAGAAACTCTGGGGAGAAACGGGTCAAAAAA 2170
Query 2174 CCGAATCCGAATCTGTTTTTCGATCCGAAGTAGAGAC-TCTGGGTCGGGTCAGACATGGA 2232
| ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 2171 CGGAATCTGAATCTGTTTTTCGATCCGAAGTAGAGACGT-TGGGTCGGGTCAGACATGGA 2229
Query 2233 AACATCGTGAAGCTACTCATGTGCTGCAACGGAGAGGAGTTTCGGTTCTTAGTATACGAG 2292
||||||||||| || || |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 2230 AACATCGTGAAACTTCTTATGTGCTGCAACGGCGAGGAGTTTCGGTTCTTAGTGTACGAG 2289
Query 2293 TTCATGGAAAACGGAAGTTTGGGTGACGTTTTGCATTCGGAGAAAGAACATCGTGCCGTT 2352
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 2290 TTCATGGAAAACGGCAGCTTAGGTGACGTTTTGCATTCGGAGAAAGAACATCGTGCCGTT 2349
Query 2353 TCTCCGCTTGATTGGACGACACGATTTTCGATCGCGGTTGGTGCTGCTCAAGGACTTTCT 2412
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2350 TCTCCACTTGATTGGACGACACGATTTTCGATCGCGGTTGGTGCTGCTCAAGGACTTTCT 2409
Query 2413 TATCTACATCATGACTCTGTTCCGCCGGTTGTTCACCGTGACGTCAAAAGCAATAATATA 2472
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2410 TATCTACATCATGACTCTGTTCCGCCTATTGTTCACCGTGACGTCAAAAGCAATAATATA 2469
Query 2473 TTGTTGGACCATGAGATGAAGCCACGTGTCGCGGACTTT-GGTTTAGCTAAATCATTGAA 2531
|||||||||||||||||||||||||||||||| || ||| |||||||||||| | |||||
Sbjct 2470 TTGTTGGACCATGAGATGAAGCCACGTGTCGCCGA-TTTCGGTTTAGCTAAACCGTTGAA 2528
Query 2532 CAGAGAAGACAATGATGGTGTCTCCGATGTTTCTCCCATGTCTTGTGTTGCTGGATCCTA 2591
|||||||||||||||||||||||||||| || | | |||||||||||||||||||||||
Sbjct 2529 GAGAGAAGACAATGATGGTGTCTCCGATG-TT-T-CAATGTCTTGTGTTGCTGGATCCTA 2585
Query 2592 CGGCTACATTGCTCCGGAATATGGTTATACGTCAAAAGTGAATGAGAAGAGCGATGTCTA 2651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2586 CGGCTACATTGCTCCGGAATATGGTTATACGTCAAAAGTGAATGAGAAGAGCGATGTCTA 2645
Query 2652 TAGCTTCGGGGTGGTTTTACTCGAATTGATTACCGGAAAAAGACCGAACGATTCGTCTTT 2711
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 2646 TAGCTTCGGGGTGGTTTTACTCGAACTGATTACGGGAAAAAGACCGAACGATTCGTCTTT 2705
Query 2712 TGGGGAGAATAAGGATATTGTTAAGTTTGCAATGGAAGCAGCTTTGTGTTACCCTTCTCC 2771
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2706 TGGGGAGAATAAGGACATTGTTAAGTTTGCAATGGAAGCAGCTTTGTGTTACCCTTCTCC 2765
Query 2772 ATCAGCAGAAGACGGAGCCATGAATCAAGATTCACCTGGAAATTATCGAGACCTTAGCAA 2831
||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||
Sbjct 2766 ATCAGCAGAAGACGGAGCCATGAATCAAGATTCACTTGGAAACTATCGAGATCTTAGCAA 2825
Query 2832 AATTGTGGATCCAAAGATGAAACTTTCGACGAGAGAATATGAAGAGATAGAAAAAGTTCT 2891
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 2826 GCTTGTTGATCCAAAGATGAAACTTTCGACGAGAGAGTATGAAGAGATAGAGAAAGTTCT 2885
Query 2892 TGACGTTGCATTGCTTTGTACGTCGTCGTTTCCGATTAACAGGCCGACCATGAGGAAAGT 2951
||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 2886 TGACGTTGCATTGCTCTGTACGTCGTCTTTTCCTATCAACAGGCCGACCATGAGGAAAGT 2945
Query 2952 AGTAGAGTTGCTTAAAGAGAAGAAGTCACTAGAGTGA 2988
|||||||||||||||||||||||| ||||||||||||
Sbjct 2946 AGTAGAGTTGCTTAAAGAGAAGAAATCACTAGAGTGA 2982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 148544318223
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5