BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496809
Length=1049
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65730.1 | Symbols: XTH6 | xyloglucan endotransglucosylase/h... 1676 0.0
> AT5G65730.1 | Symbols: XTH6 | xyloglucan endotransglucosylase/hydrolase
6 | chr5:26299032-26300478 FORWARD LENGTH=1115
Length=1115
Score = 1676 bits (907), Expect = 0.0
Identities = 1004/1050 (96%), Gaps = 10/1050 (1%)
Strand=Plus/Plus
Query 1 ATGGCTAAGATATGTTCCCCTTCTTTTCCCGATACTCCCTTTCTTTACATTTTCACTCTC 60
||||||||||||| ||||||||||||||||| ||||| || ||||| |||||| ||||||
Sbjct 49 ATGGCTAAGATATATTCCCCTTCTTTTCCCGGTACTCTCTGTCTTTGCATTTTTACTCTC 108
Query 61 TTTACAG-TAATGTTCATTCGGATTTCCGCTCGGCCCGCGACATTCGTCGATGATTTCAA 119
|| || | |||||||||||||| |||||||||| ||||||||||||||||| ||||||||
Sbjct 109 TTGAC-GCTAATGTTCATTCGGGTTTCCGCTCGACCCGCGACATTCGTCGAGGATTTCAA 167
Query 120 AGCCGCGTGGTCGGAATCTCACATCCGTCAAATGGACGGTGGAAAAGCTATCCAGCTCGT 179
|||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 168 AGCCGCCTGGTCGGAATCTCACATCCGTCAAATGGAAGACGGAAAAGCTATCCAGCTCGT 227
Query 180 CCTTGATCAGAGCACTGGATGTGGATTTGCTTCCAAAAGAAAGTATTTATTCGGACGAGT 239
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 228 CCTTGATCAGAGCACTGGATGTGGATTTGCTTCCAAAAGAAAATATCTATTCGGACGAGT 287
Query 240 GAGCATGAAGATCAAACTCATTCCAGGAGACTCTGCCGGTACGGTCACCGCTTTCTACAT 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 288 GAGCATGAAGATCAAACTCATTCCCGGAGACTCTGCCGGTACGGTCACCGCTTTCTACAT 347
Query 300 GAACTCCGATACGGCCACGGTGAGAGACGAGCTAGATTTCGAGTTCTTGGGAAACAGAAG 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 348 GAACTCCGATACGGCCACGGTGAGAGACGAGCTAGATTTTGAGTTCTTGGGAAACAGAAG 407
Query 360 TGGTCAACCTTACTCAGTGCAAACAAACATATTTGCTCATGGCAAAGGAGATAGAGAACA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 TGGTCAACCTTACTCAGTGCAAACAAACATATTTGCTCATGGCAAAGGAGATAGAGAACA 467
Query 420 AAGAGTTAATCTTTGGTTCGACCCATCTTTGGATTACCACACTTACACTATCTTATGGTC 479
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 468 AAGAGTTAATCTTTGGTTCGACCCATCTATGGATTACCACACTTACACTATCTTATGGTC 527
Query 480 ACACAAACACATTGTTTTTTACGTAGACGATGTGCCAATAAGAGAATACAAAAACAACGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 ACACAAACACATTGTTTTTTACGTAGACGATGTGCCAATAAGAGAATACAAAAACAACGA 587
Query 540 AGCCAAGAACATTGCTTACCCAACATCACAACCTATGGGAGTTTACTCAACATTATGGGA 599
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 588 AGCCAAGAACATAGCTTACCCAACATCACAACCTATGGGAGTATACTCAACATTATGGGA 647
Query 600 AGCCGATGACTGGGCGACACGTGGCGGATTAGAGAAAATTGATTGGAGCAAAGCTCCGTT 659
||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 648 AGCAGATGACTGGGCAACACGTGGTGGATTAGAGAAAATTGATTGGAGCAAAGCTCCATT 707
Query 660 TTATGCTTATTACAAAGATTTCGACATCGAAGGTTGTCCTGTTCCTGGACCAACCTTTTG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 TTATGCTTATTACAAAGATTTCGACATCGAAGGTTGTCCTGTTCCTGGACCAACCTTTTG 767
Query 720 TCCATCGAACCCTCACAATTGGTGGGAAGGTTATGCCTATCAGTCTCTTAACGCCCTCGA 779
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 768 TCCATCGAACCCTCATAATTGGTGGGAAGGTTATGCCTATCAGTCTCTTAACGCCGTTGA 827
Query 780 AGCTCGACGTTACCGGTGGGTTAGAGTAAACCATATGGTTTATGATTATTGTACCGACCG 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 828 AGCTCGACGTTACCGGTGGGTTAGAGTAAACCATATGGTTTATGATTATTGTACTGACCG 887
Query 840 GTCTAGGTTTCCTGTCCCACCACCCGAGTGTCGTGCTTGAAAATAATTCCATATATACGT 899
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 888 GTCTAGGTTTCCTGTCCCACCACCCGAGTGTCGTGCTTGAAAATAATTGCATA----CGT 943
Query 900 ACGTTACAATGATCATGTTTCGTCTTGTACGATATTTTATATATATATTAATTGTGGGAA 959
||||| |||||||||||||||||||||||||| |||||||||||| | | |||||||||
Sbjct 944 ACGTTGCAATGATCATGTTTCGTCTTGTACGAGATTTTATATATA-A--A-TTGTGGGAA 999
Query 960 AATGTGGATTGTATTGTCCTCTTATGCAATTGTGCAGACGTACGTGAGTATATATAGATA 1019
|||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||
Sbjct 1000 AATGTGGATTGTATTGTCCTCTTACGCAATTGTGCAGACGTACGTGAGTGTGTATAGATA 1059
Query 1020 TAATTGTGATTTGTGGTTATTTGAAAATTT 1049
|||||||||||||||||||||||||| |||
Sbjct 1060 TAATTGTGATTTGTGGTTATTTGAAATTTT 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51439766528
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5