BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496810
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65740.2 | Symbols: | zinc ion binding | chr5:26301493-2630... 1596 0.0
> AT5G65740.2 | Symbols: | zinc ion binding | chr5:26301493-26303471
REVERSE LENGTH=1161
Length=1161
Score = 1596 bits (864), Expect = 0.0
Identities = 1030/1110 (93%), Gaps = 12/1110 (1%)
Strand=Plus/Plus
Query 1 ATGATGAAGGGTTCTGGAGAATGTATAGGACGTGAAAGATGCGAGGAATTAGCAAAGTCT 60
|||||||| | ||||||||||||| |||| ||||||||||||||||||||||| ||||||
Sbjct 50 ATGATGAATGTTTCTGGAGAATGTGTAGGCCGTGAAAGATGCGAGGAATTAGCCAAGTCT 109
Query 61 TCTTCTTTTTACCGGAAAGTTTACTCGGAGATAGAGGAAATTGGATGGGAACCGCTAAGG 120
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 110 TCTTCGTTTTACCGGAAAGTTTACTCGGAGATAGAAGAAATTGGATGGGAACCAATAAGG 169
Query 121 AGATTAGGTGGAGATTTAACGTTTTTCAGCTTTCAGATTTTAGATAAGAAGGGAAGAGCA 180
|||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||
Sbjct 170 AGATTAGGTGGAGATTTAACGTTTTTTAGCTTTCACATTCTAGATAAGAAGGGAAGAGCT 229
Query 181 CACAACTTAGAATTTCAACTGAACAGAGACTATCCTAATTCCCCACCTTGTGTTTCTGCG 240
|||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 230 CACAACTTAGAAATTCAACTGAACAGAGACTATCCTAATTCACCACCTTCTGTTTCTGCG 289
Query 241 GATGTGCCATATATGTTTACTTTAGAATGGTCAACAAGTTCAAGGTTGAAGGATGTGATG 300
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||
Sbjct 290 GATGTGCCATATATGTTTACACTAGAATGGTCAACAAGTTCAAGATTGAAGGATGTAATG 349
Query 301 TACCAATTCCAAAAGCATTTGGACTATCTTCAAGAATTTTGGTCTGTCTTGGACGATATC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 350 CACCAATTCCAAAAGCATTTGGACTATCTTCAAGAATTTTGGTCTGTCTTGGACAATATC 409
Query 361 GATAAATCTCTCTGTGTTGTTGATGCCAAACAACCATCTCGCGCCTCCGCTATCCGCCGG 420
||||||||||| ||||||||||||| ||| |||||| |||| ||||| ||||| ||||||
Sbjct 410 GATAAATCTCTATGTGTTGTTGATGTCAAGCAACCAGCTCGTGCCTCTGCTATTCGCCGG 469
Query 421 ATTCATGCTGGGAATGATTGCATCATCATTGTTCATATCGACTTGAAAGACCCTAAATCC 480
||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 470 ATTGATGCTGGGAATGATTGTATCATCATTGTTCATATCGACTTCAAAGACCCTAAATCC 529
Query 481 CTACCAGAATGCCGGTTTATTGGTCCTGTGCCTCCAGCTACGCATATGAACATCTTACAT 540
|||||||| | |||||||||||||||||||||| |||||||||||||||||| ||| |||
Sbjct 530 CTACCAGAGTCCCGGTTTATTGGTCCTGTGCCTTCAGCTACGCATATGAACAACTTGCAT 589
Query 541 ATGTTATGGAGAAGAAATAGCAAAAAATGGTCAAAGGAAAGACCATTTCCTGAAAACCTC 600
|||||||||||||||||| |||||| ||||||||| |||||| |||||||||| |||||
Sbjct 590 ATGTTATGGAGAAGAAATTGCAAAAGATGGTCAAATGAAAGATCATTTCCTGAGAACCTT 649
Query 601 GAATGTATTCTAGGTACTGAGCTTCCAAAGCCTCTAGGTCTCCAAGAGGAAGACAATCAA 660
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 650 GAATGTATTCTAGGTACTGAGCTTCCAAAGCCTCTAGGTCTCCAAGTGGAAGACGATCAA 709
Query 661 CAACAAGTTGAATGTGGAATTTGCTATGCGCAGTTTCTACCCACCGATGAGGAGCTCGGA 720
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 CAACAAGTTGAATGTGGGATTTGCTATGCGCAGTTTCTACCCACCGATGAGGAGCTCGGA 769
Query 721 GCTAGAAGTGGGACGCGAACAGATTACACATGTGAGAACATCAGTTGCAACAAGTCTTTC 780
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 770 GCTAGAAGTGGGACACGAACAGATTACACATGTGAAAACATCAGTTGCAACAAGTCTTTC 829
Query 781 CATAGCCTTTGCCTCACAGACTGGTTAAGGTCTATCACAACAACAAGACAGTCATTTGAT 840
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 CATAGCCTCTGCCTCACAGACTGGTTAAGGTCTATCACAACAACAAGACAGTCATTTGAT 889
Query 841 GTTCTGTTTGGGAACTGTCCTTATTGTTCAGACCCAGTGGCAGTCAAAATCAACAACCAT 900
||||||||||||||||| |||||||||||||||||||| |||||||||| || |||| |
Sbjct 890 GTTCTGTTTGGGAACTGCCCTTATTGTTCAGACCCAGTTGCAGTCAAAACCAGCAACAAA 949
Query 901 TTGA---AGCCATAC--T--TGCTAATTAGCTGAT-TCTGAAAGTTCTAATGAAACATGA 952
| || || || || | | ||||||||||||| |||||| ||| ||||||||| |||
Sbjct 950 TAGAGTTAGACAAACCATCATCCTAATTAGCTGATATCTGAATGTTGTAATGAAACGTGA 1009
Query 953 TACAAAGAGAAGAGTTAGTACAGTGATGAGTAGTAGTA--A-GTGAGGACAAAAGTTCCT 1009
|||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||
Sbjct 1010 TACAAAGAGAAGAGTTAGTACAGTAATGAGTAGTAGTAGTAAGTGAGGACAAAAGTTCCT 1069
Query 1010 TTTTACTATTTTTCTTCTGTACGTTTAAGATAAGACCCATGTAGCTTTCAAATAAGAAAG 1069
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1070 TTTTACTATTTTTCTTCTGTACGTTTAAGATAAGACTCATGTAGCTTTCAAATAAGAGAT 1129
Query 1070 GTGAATGTACCTTCTTTTTTCCTTT-GTGG 1098
||||||||||||| |||||| |||| ||||
Sbjct 1130 GTGAATGTACCTTGTTTTTTTCTTTTGTGG 1159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61395266535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5