BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496814
Length=1682
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65760.1 | Symbols: | Serine carboxypeptidase S28 family pr... 2525 0.0
> AT5G65760.1 | Symbols: | Serine carboxypeptidase S28 family
protein | chr5:26308253-26311025 FORWARD LENGTH=1718
Length=1718
Score = 2525 bits (1367), Expect = 0.0
Identities = 1590/1695 (94%), Gaps = 25/1695 (1%)
Strand=Plus/Plus
Query 1 AGTTATGGCGAACCATTTTTGCTTGCTTCTGATCTTCACTTTCTTCACTCTATTGTTTCC 60
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 33 AGTTATGGCGAGCCATTTTTGCTTGCTTCTGATCTTCACTTTCTTCACTCTAGTGTTTCC 92
Query 61 GTCAAACGGATCGTCACTGTCTTCTTCCAAGCTTTTACCTCGTTTCCCTCGCTACACTTC 120
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 93 GTCAAACGGATCTTCACTGTCTTCTTCCAAGCTTTTACCTCGTTTCCCTCGCTACACTTT 152
Query 121 CCGGAACC--G-AGCCAGAATCCAGCAGTTCCGGGGAGATCGAAACGAGTACCGATACGA 177
|| ||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 153 CCAGAACCGAGAAGCCAGAATCCAGCAGTTCCGGGGAGATCGAAACGAGTATCGATACGA 212
Query 178 GACTAAGTTCTTCTCTCAGCAGCTTGACCACTTCAGCTTCGCCGATCTTCCCAAATTTC- 236
||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||
Sbjct 213 GACTAAGTTCTTCTCACAGCAGCTGGACCACTTCAGCTTCGCCGATCTTCCCAAA-TTCT 271
Query 237 CGCAACGCTACTTGATCAATTCCGATTACTGGCTTGGTGCTTCTGCGCTTGGACCTATCT 296
| ||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 272 CTCAACGCTACCTCATCAATTCCGATCACTGGCTTGGTGCTTCTGCGCTTGGACCTATCT 331
Query 297 TCCTATACTGCGGCAACGAAGGTGATATTGAGTGGTTTGCTACAAACTCTGGATTCATTT 356
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 332 TCCTTTACTGCGGCAACGAAGGTGATATTGAATGGTTTGCTACAAACTCTGGATTCATTT 391
Query 357 GGGATATCGCTCCCAAGTTCGGTGCCTTGCTTGTTTTCCCTGAGGTTCGTTCGTGTTTAT 416
|||||||||||||||||||||||||||||||||||||||| ||| | | | | | |
Sbjct 392 GGGATATCGCTCCCAAGTTCGGTGCCTTGCTTGTTTTCCCCGAGCATAGGTATTATGGAG 451
Query 417 TTTGTATGCCTTATGGAAGCATGGAAGAAGCTTACAAGAACGCTACCACTTTATCATATC 476
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 452 AGTCTATGCCTTATGGAAGCAGGGAAGAAGCTTACAAGAACGCTACCACTTTATCATATC 511
Query 477 TCACAACTGAACAAGCTCTGGCTGATTTTGCTGTTTTTGTCACTGATTTGAAACGCAACT 536
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 512 TCACTACTGAGCAAGCTCTTGCTGATTTTGCTGTTTTTGTCACTGATTTGAAACGCAACT 571
Query 537 TGTCTGCCGAAGCTTGCCCAGTTGTGTTGTTTGGTGGATCATATGGTGGAATGTTAGCAG 596
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 TGTCTGCGGAAGCTTGCCCAGTTGTGTTGTTTGGTGGATCATATGGTGGAATGTTAGCAG 631
Query 597 CATGGATGAGGCTCAAGTATCCTCACATTGCAATTGGAGCTTTAGCTTCCTCAGCTCCAA 656
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 632 CATGGATGAGGCTCAAGTATCCTCACATTGCAATAGGAGCTTTAGCTTCCTCAGCTCCAA 691
Query 657 TTCTTCAGTTTGAAGATATTGTACCCCCTGAGACGTTTTACGACATTGCATCCAATGATT 716
||||||||||||||||| ||||||| ||||||||||| || ||||||||||| |||||||
Sbjct 692 TTCTTCAGTTTGAAGATGTTGTACCTCCTGAGACGTTCTATGACATTGCATCAAATGATT 751
Query 717 TCAAGCGTGAGAGTAGCAGCTGCTTCAACACCATTAAGGACTCGTGGGATGCAATAATAG 776
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 752 TCAAGCGTGAGAGTAGCAGCTGCTTCAATACCATTAAGGACTCGTGGGATGCAATAATAG 811
Query 777 CAGAGGGTCAGAAGGAGAATGGCCTTCTGCAATTGACGAAAACTTTTCACTTTTGTCGGG 836
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 812 CAGAGGGTCAGAAGGAAAATGGCCTTCTGCAGTTGACGAAAACTTTTCACTTTTGCCGGG 871
Query 837 TGTTGAACAGTACTGATGACCTTTCAGACTGGCTGGACTCTGCTTATAGTTATTTGGCAA 896
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 872 TGTTGAACAGTACTGATGACCTTTCAGACTGGCTGGACTCTGCCTATAGTTATTTGGCAA 931
Query 897 TGGTGGATTATCCGTATCCCGCAGACTTCATGATGCCTTTGCCTGGAAATCCCATTAGAG 956
||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||
Sbjct 932 TGGTGGATTATCCGTATCCTGCTGACTTCATGATGCCTTTGCCTGGACATCCCATTAGAG 991
Query 957 AGGTCTGCAGAAAAATTGATGGTGCTCATAGTGATGCTAGCATCCTAGATCGCATATATG 1016
||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||
Sbjct 992 AGGTCTGCAGAAAAATTGACGGTGCTGGTAGTAATGCTAGCATCCTAGATCGCATATATG 1051
Query 1017 CAGGAATAAGTGTGTACTATAACTATACTGGAAATGTTGACTGCTTCAAGTTGGATGATG 1076
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 CAGGGATAAGTGTGTACTACAACTATACTGGAAATGTTGACTGCTTCAAGTTGGATGATG 1111
Query 1077 ACCCTCATGGTTTGGATGGATGGAATTGGCAGGCATGCACGGAGATGGTAATGCCCATGT 1136
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 ACCCTCATGGGTTGGATGGATGGAATTGGCAGGCATGCACGGAGATGGTAATGCCCATGT 1171
Query 1137 CTAGCAACCAAGAAAACAGCATGTTTCCAGCTTATGATTTTAATTACTCTTCATACAAAG 1196
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1172 CTAGCAACCAAGAAAACAGCATGTTTCCAGGTTATGGTTTTAATTACTCTTCATACAAAG 1231
Query 1197 AGGAATGCTGGAATACATTCCGAGTCAATCCAAGACCCAAATGGGTCACAACAGAGTTTG 1256
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1232 AGGAATGCTGGAATACATTCCGAGTTAATCCAAGACCCAAATGGGTCACAACAGAGTTCG 1291
Query 1257 GTGGACATGATATTGAGACCACCCTGAAGTCGTTTGGAAGTAACATCATTTTCTCAAATG 1316
||||||||||||| | ||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1292 GTGGACATGATATAGCGACCACCTTGAAGTCATTTGGAAGTAACATCATTTTCTCAAATG 1351
Query 1317 GTCTGTTAGATCCTTGGAGTGGTGGCAGTGTTCTCAAGAACTTATCCAATACCATTGTTG 1376
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1352 GTCTGTTAGATCCTTGGAGTGGTGGCAGTGTTCTCAAGAACTTATCTGATACCATTGTTG 1411
Query 1377 CTCTTGTCACAAAAGAAGGTGCACATCACTTGGATTTACGACCTTCAACAGCAGAAGACC 1436
|||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1412 CTCTCGTCACAAAAGAAGGTGCACATCACTTGGATCTACGACCTTCAACACCAGAAGACC 1471
Query 1437 CGAAATGGCTTGTGGACCAGCGAGAAGCGGAGATACGGTTGATTCAAGGATGGATAGAAA 1496
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 1472 CGAAATGGCTTGTGGACCAGCGGGAAGCCGAGATACGGTTGATTCAAGGATGGATCGAAA 1531
Query 1497 CTTATCGACTAGAAAAAGAAGCTAAGGTTTCGCTCTTAAAACGTTCTTGGTAAGAGAACA 1556
|||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1532 CTTATCGAGTAGAAAAAGAAGCTAAGGTTTCTCTGTTAAAACGTTCTTGGTAAGAGAACA 1591
Query 1557 ATGTAAAGAATCGTCTCAGTGTGTTTTCCACGAAACTTAGAATCTGCAAACTTTGTATTG 1616
||| |||||||||||||||||||| | | || |||||||||||||||||||||
Sbjct 1592 ATGAAAAGAATCGTCTCAGTGTGT-----A--A--CTCGGAATCTGCAAACTTTGTATTG 1642
Query 1617 T-AACACATCTGGTTTGAATAAATTCATGTAA----G----CTCTCAATGATCACTAATC 1667
||||||| | ||||||||||| ||||||| | |||||||||||||||||||
Sbjct 1643 CGAACACAT--GCTTTGAATAAATCCATGTAACTATGTAAACTCTCAATGATCACTAATC 1700
Query 1668 TTTTCTACTTGCTTA 1682
||||||||| |||||
Sbjct 1701 TTTTCTACTAGCTTA 1715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83132102520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5