BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496816
Length=1325
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65790.1 | Symbols: ATMYB68, MYB68 | myb domain protein 68 |... 2145 0.0
AT3G49690.1 | Symbols: RAX3, MYB84, ATMYB84 | myb domain protei... 527 1e-148
AT4G37780.1 | Symbols: MYB87, ATMYB87 | myb domain protein 87 |... 243 5e-63
> AT5G65790.1 | Symbols: ATMYB68, MYB68 | myb domain protein 68
| chr5:26322948-26324578 FORWARD LENGTH=1405
Length=1405
Score = 2145 bits (1161), Expect = 0.0
Identities = 1276/1330 (96%), Gaps = 14/1330 (1%)
Strand=Plus/Plus
Query 1 ATCAAGAATCAAGAAGATGGGAAGAGCACCGTGTTGTGATAAGGCCAACGTGAAGAAAGG 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 ATCAAGAATCAAGAAAATGGGAAGAGCACCGTGTTGTGATAAGGCCAACGTGAAGAAAGG 131
Query 61 GCCTTGGTCGCCTGAAGAAGACGCCAAACTCAAAGATTACATCGAGAATAGTGGCACAGG 120
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 GCCTTGGTCTCCTGAGGAAGACGCCAAACTCAAAGATTACATCGAGAATAGTGGCACAGG 191
Query 121 AGGCAATTGGATCGCTTTGCCTCA-AAAGATTGGTTTAAGGAGATGTGGAAAGAGTTGCA 179
|||||| ||||| ||||||||||| ||| |||||||||||||||||||| ||||||||||
Sbjct 192 AGGCAACTGGATTGCTTTGCCTCAGAAA-ATTGGTTTAAGGAGATGTGGGAAGAGTTGCA 250
Query 180 GGCTTAGGTGGCTCAACTATTTGAGACCAAACATCAAACATGGTGGCTTCTCCGAGGAAG 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 GGCTAAGGTGGCTCAACTATTTGAGACCAAACATCAAACATGGTGGCTTCTCCGAGGAAG 310
Query 240 AAGACAACATCATTTGTAACCTTTATGTTACAATTGGTAGCAGGTGGTCTATAATTGCTG 299
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 311 AAGACAACATCATTTGTAACCTCTATGTTACTATTGGTAGCAGGTGGTCTATAATTGCTG 370
Query 300 CACAATTGCCGGGAAGAACGGACAACGATATCAAAAACTATTGGAACACGAGGCTGAAGA 359
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CACAATTGCCGGGAAGAACCGACAACGATATCAAAAACTATTGGAACACGAGGCTGAAGA 430
Query 360 AGAAGCTTCTGAACAAACAAAGGAAAGAGTTCCAAGAAGCGCGAATGAAGCAAGAGATGG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 AGAAGCTTCTGAACAAACAAAGGAAAGAGTTCCAAGAAGCGCGAATGAAGCAAGAGATGG 490
Query 420 TGATGATGAAAAGACAACAACAAGGACAAGGACAAGGTCAAGGTAATGGTAGTACGGATC 479
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 491 TGATGATGAAAAGGCAACAACAAGGACAAGGACAAGGTCAAAGTAATGGTAGTACGGATC 550
Query 480 TTTATCTTAACAACATGTTTGGATCATCACCGTGGCCATTACTACCACAGCTTCCTCCTC 539
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 551 TTTATCTTAACAACATGTTTGGATCATCACCATGGCCATTACTACCACAACTTCCTCCTC 610
Query 540 CTCATCATCAAATACCTCTTGTG-ATGATGGAACCAACAAGCTGTAACTACTATCAAACG 598
| ||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||
Sbjct 611 CACATCATCAAATACCTCTTG-GAATGATGGAACCAACAAGCTGTAACTACTACCAAACG 669
Query 599 ACACCGTCTTGTAACCTAGAACAAAAGCCATTGATCACACTCAAGAACATGGTCAAGATT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 ACACCGTCTTGTAACCTAGAACAAAAGCCATTGATCACACTCAAGAACATGGTCAAGATT 729
Query 659 GAAGAAGAACAAGAAAGGACAAACCCTGATCATCACCATCATCAAGATTCTGTCACAAAC 718
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 730 GAAGAAGAACAGGAAAGGACAAACCCTGATCAT---CATCATCAAGATTCTGTCACAAAC 786
Query 719 CCTTTTGATTTCTCTTTCTCTCAGCTTTTGTTAGATCCCAATTACTATTTGGGATCAGGA 778
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 787 CCTTTTGATTTCTCTTTCTCTCAGCTTTTGTTAGATCCCAATTACTATCTGGGATCAGGA 846
Query 779 GTGGGAGGAGAAGGAGATTTTGCTATCACGAGCAGCAGCACAAACTCACCATTACCAAAC 838
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 847 GGGGGAGGAGAAGGAGATTTTGCTATCATGAGCAGCAGCACAAACTCACCATTACCAAAC 906
Query 839 ACAAGTAGTGATCAACATCCAAGTCAACAGCAAGAGATTCTTCAATGGTTTGGGAGCAGT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 ACAAGTAGTGATCAACATCCAAGTCAACAGCAAGAGATTCTTCAATGGTTTGGGAGCAGT 966
Query 899 AACTTTCAGACTGAAGCAATCAACGATATGTTCTTAAACAACAACAACA---TGGTGAAT 955
||||||||||| ||||||||||||||||||||| ||||||||||||||| | ||||||
Sbjct 967 AACTTTCAGACAGAAGCAATCAACGATATGTTCATAAACAACAACAACAACATAGTGAAT 1026
Query 956 CTTGAGACCAACGAGAACACAAAAGTCTATGGAGACTCCTCAGTAGCCGGAGCCGCGGTC 1015
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1027 CTTGAGACCATCGAGAACACAAAAGTCTATGGAGACGCCTCAGTAGCCGGAGCCGCTGTC 1086
Query 1016 GGAGCAGCTTTTGCCGGAGGGACGACGAGTACATCGGCGGATCAAAGTACAATAAGTTGG 1075
|||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1087 CGAGCAGCTTTGGGCGGAGGGACAACGAGTACATCGGCGGATCAAAGTACAATAAGTTGG 1146
Query 1076 GAGGATATAACCTCTCTTGTTAATACCGAAGATGCAAGTTACTTCAATGCGCCAAATCAT 1135
||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1147 GAGGATATAACTTCTCTAGTTAATTCCGAAGATGCAAGTTACTTCAATGCGCCAAATCAT 1206
Query 1136 GTGTAACATTTTGTTTAAAACTTTATTTTTACTTAAAATATATAAAGAGGGGTTTTCTAT 1195
|||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 1207 GTGTAACATTTTGTTTAAAACTTTATTTGTACTTAAA-TACATAAAGAGGGGTTTTCTAT 1265
Query 1196 TTTGTATAAATTTGTGTATTTAGGGGAGTGGTAGAAAAGTTATATGGATTGAGATTAGTA 1255
||||||||||| ||||| ||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1266 TTTGTATAAATCTGTGTCTTTAGGG-AGTGGTAGAAAAGTTTTATGGATTGAGATTAGTA 1324
Query 1256 TTCATGCCGAAatttgtttattttttagtttcaacttagctttattcgaacaatttatat 1315
||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1325 TTCATGCAGAAATTTGTTTATTTT--AGTTTCAACTTAGCTTTATTCGAACAACTTATAT 1382
Query 1316 gatatttttt 1325
||||||||||
Sbjct 1383 GATATTTTTT 1392
> AT3G49690.1 | Symbols: RAX3, MYB84, ATMYB84 | myb domain protein
84 | chr3:18427735-18429201 FORWARD LENGTH=1240
Length=1240
Score = 527 bits (285), Expect = 1e-148
Identities = 390/439 (89%), Gaps = 13/439 (3%)
Strand=Plus/Plus
Query 14 AAG-ATGGGAAGAGCACCGTGTTGTGATAAGGCCAACGTGAAGAAAGGGCCTTGGTCGCC 72
||| ||||||||||||||||||||||| || || ||||||||||||||||||||||| ||
Sbjct 203 AAGTATGGGAAGAGCACCGTGTTGTGACAAAGCAAACGTGAAGAAAGGGCCTTGGTCTCC 262
Query 73 TGAAGAAGACGCCAAACTCAAAGATTACATCGAGAATAGTGGCACAGGAGGCAATTGGAT 132
||| ||||| || ||||||||| |||||| || ||||||||||| ||||||||||||||
Sbjct 263 TGAGGAAGATGCAAAACTCAAATCTTACATTGAAAATAGTGGCACCGGAGGCAATTGGAT 322
Query 133 CGCTTTGCCTCAAAAGATTGGTTTAAGGAGATGTGGAAAGAGTTGCAGGCTTAGGTGGCT 192
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 323 CGCTTTGCCTCAAAAGATTGGTTTAAAGAGATGTGGAAAGAGTTGCAGGCTGAGGTGGCT 382
Query 193 CAACTAT-TTGAGACCAAACATCAAACATGGTGGCTTCTCCGAGGAAGAAGACAACATCA 251
|||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 383 TAACTATCTT-AGACCAAACATCAAACATGGTGGCTTCTCTGAGGAAGAAGAAAACATCA 441
Query 252 TTTGTAACCTTTATGTTACAATTGGTAGCAGGTGGTCTATAATTGCTGCACAATTGCCGG 311
|||||| |||||| |||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 442 TTTGTAGCCTTTACCTTACAATTGGTAGCAGGTGGTCTATAATCGCTGCTCAATTGCCGG 501
Query 312 GAAGAACGGACAACGATATCAAAAACTATTGGAACACGAGGCTGAAGAAGAAGCTTC-TG 370
|| |||| ||||||||||| ||||||||||||||||||||||| |||||||| || | |
Sbjct 502 GACGAACAGACAACGATATAAAAAACTATTGGAACACGAGGCTCAAGAAGAAACT-CATT 560
Query 371 AACAAACAAAGGAAAGAG-TTCCAAGAAGCGCGAATG-A--AGCAAGAGATG--G-TGAT 423
||||||||| | || ||| ||| ||||||| | ||| | ||||||||||| | ||||
Sbjct 561 AACAAACAACGCAAGGAGCTTC-AAGAAGCTTGTATGGAGCAGCAAGAGATGATGGTGAT 619
Query 424 GATGAAAAGACAACAACAA 442
|||||| |||||||| |||
Sbjct 620 GATGAAGAGACAACACCAA 638
> AT4G37780.1 | Symbols: MYB87, ATMYB87 | myb domain protein 87
| chr4:17758243-17759557 REVERSE LENGTH=1110
Length=1110
Score = 243 bits (131), Expect = 5e-63
Identities = 301/382 (79%), Gaps = 16/382 (4%)
Strand=Plus/Plus
Query 11 AAGAAGATGGGAAGAGCACCGTGTTGTGATAAGGCCAAC-GTGAAGAAAGGGCCTTGGTC 69
||||| ||||||||||||||||| || || || | | |||||||||||||| |||||
Sbjct 26 AAGAAAATGGGAAGAGCACCGTGCTGCGACAA-GATGGCGGTGAAGAAAGGGCCATGGTC 84
Query 70 GCCTGAAGAAGACGCCAAACTCAAAG-ATTACATCG-AGAATAGTGGCACAGG-AGGCAA 126
| | || ||||| ||| || ||| |||||||| | || | ||||| || | |||
Sbjct 85 GACGGAGGAAGATGCCGTGCT-TAAGTCTTACATCGAAAAACA-CGGCACCGGCA-ACAA 141
Query 127 TTGGATCGCTTTGCCTCAAAAG-ATTGGTTTAAGGAGATGTGGAAAGAGTTGCAGGCTT- 184
||||| | | |||| | || ||||| ||| ||| || || |||||||| | ||
Sbjct 142 CTGGATTTCCCTCCCTC-AGAGAATTGGGATAAAGAGGTGCGGGAAGAGTTG-TCGTTTG 199
Query 185 AGGTGGCTCAACTATTTGAGACCAAACATCAAA-CATGGTGGCTTCTCCGAGGAAGAAGA 243
|| ||||| || || ||||| || ||| | ||| ||||| |||||| |||| ||||||||
Sbjct 200 AGATGGCTTAATTACTTGAGGCCTAAC-TTAAAGCATGGAGGCTTCACCGATGAAGAAGA 258
Query 244 CAACATCATTTGTAACCTTTATGTTACAATTGGTAGCAGGTGGTCTATAATTGCTGCACA 303
|||||||||| | |||||| |||| ||||| |||||||||||||| |||||| ||||
Sbjct 259 TTACATCATTTGCAGCCTTTACATTACTATTGGAAGCAGGTGGTCTATCATTGCTTCACA 318
Query 304 ATTGCCGGGAAGAACGGACAACGATATCAAAAACTATTGGAACACGAGGCTGAAGAAGAA 363
||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 319 ATTACCGGGAAGAACAGACAACGACATCAAAAACTATTGGAACACGAGGCTGAAGAAGAA 378
Query 364 GCT-TCTGAACAAACAAAGGAA 384
||| | ||| ||| ||| ||||
Sbjct 379 GCTAT-TGAGCAAGCAAGGGAA 399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65210507955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5