BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496819
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65840.1 | Symbols: | Thioredoxin superfamily protein | chr... 1539 0.0
> AT5G65840.1 | Symbols: | Thioredoxin superfamily protein | chr5:26343730-26346082
REVERSE LENGTH=1220
Length=1220
Score = 1539 bits (833), Expect = 0.0
Identities = 1064/1168 (91%), Gaps = 45/1168 (4%)
Strand=Plus/Plus
Query 1 AATTGAGTTTATGATTTTGGTTTCTGAGTCACCAATGGCGATTTTCTCTCTACGATCTTC 60
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 16 AATTGAGTTTATGATTTTGGTTTCTGAATCACCAATGGCGATTCTCTCTCTACGATCTTC 75
Query 61 AAGCTCCTTGCCACTCATTTGTTCCACAATTTCTCCTATGTGCTCGAAACCC---CTGTC 117
||||| ||||| || ||||||||||||||||||||| |||||||||||||| ||||
Sbjct 76 GAGCTCATTGCCGCTTATTTGTTCCACAATTTCTCCTCTGTGCTCGAAACCCATGTTGTC 135
Query 118 TCGA-TTACCATCGAATTTCTCATCGTCGATTGCTTCTGTTCCTTTCACCAAATTAAAAT 176
|| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 136 TC-AGTTACCATCGAATTTCTCATCGTCGATTGCTTCTGTTCCTGTCACCAAATTAAAAT 194
Query 177 CCAGTTACAG-T--TCCGTTTCACCGATTAGCAGACCCCGTATGGTTTCCGCGAGAGCTG 233
|||||||||| | ||||||||||||||||| || || ||| ||||||||||||||||||
Sbjct 195 CCAGTTACAGTTCCTCCGTTTCACCGATTAGTAGGCCTCGTGTGGTTTCCGCGAGAGCTG 254
Query 234 CCACTGAGTCCATCACTGATTACAGAGAAGATATCGGCGAGATTCTCGGAGATGTCTCCA 293
||||||||||| ||||||||||||||||||||||||| ||||| ||||| |||||||| |
Sbjct 255 CCACTGAGTCCTTCACTGATTACAGAGAAGATATCGGTGAGATACTCGGCGATGTCTCTA 314
Query 294 TCTTTACTGCTTCAGGCCAACGCGTGCAATTCAGTGATCTCTGGGATCAGAAAGATGGAA 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 TCTTTACTGCTTCAGGCCAACGCGTGCAATTCAGTGATCTCTGGGATCAGAAAGATGGAA 374
Query 354 TTGCTGCTGTTGTACTTTTGAGGCATTTCGGATGCGTTTGCTGTTGGGAACTTGCTACTG 413
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 TTGCTGCCGTTGTACTCTTGAGGCATTTCGGATGCGTTTGCTGTTGGGAACTTGCTACTG 434
Query 414 CTTTGAAAGAGGCTAAACCGAGATTTGATGCGGCTGGTGTTAAATTGGTAGCTGTTGGTG 473
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 435 CTTTGAAAGAGGCTAAACCGAGATTTGATGCGGCTGGTGTTAAATTGATAGCTGTTGGAG 494
Query 474 TTGGAACTCCTGATAAGGCTCGTATACTTGCTACTCGGTTACCTTTTCCGATGGAATGTC 533
||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 495 TTGGAACTCCTGACAAGGCTCGTATACTTGCAACTCGGTTACCTTTTCCCATGGAATGTC 554
Query 534 TTTATGCGGATCCTGAACGCAAGGCATATGATGTTCTTGGTTTATACTATGGGTTAGGAC 593
|||||||||||||||||||||||||||||||||||||||||||||||| | |||| || |
Sbjct 555 TTTATGCGGATCCTGAACGCAAGGCATATGATGTTCTTGGTTTATACT-TCGGTTTGGGC 613
Query 594 GG-ACTTTCTTCAACCCAGCTAGCGCTAAGGTCTTCTCAAGATTTAACGAGATTCGAGAA 652
| ||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||
Sbjct 614 CGCACTTTCTTCAACCCAGCTAGCACCAAGGTCTTCTCAAGATTTAGCGAGATTCGAGAA 673
Query 653 GCCACAAAGAATTACACCATAGAAGCTACTCCTGAAGACAGAAGCAGTGTTTTGCAACAG 712
|| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 674 GCAACAAAAAATTACACCATAGAAGCCACTCCTGAAGACAGAAGCAGTGTGTTGCAACAG 733
Query 713 GGAGGTACGTTTGTGTTCAGAGGCAAGAAACTGTTGTACGGTCGAAAAGACGAAGGCACT 772
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 734 GGAGGTACGTTTGTGTTCAGAGGCAAGAAATTATTGTACGGTCGAAAAGACGAAGGCACG 793
Query 773 GGAGATCATCCATCTCTGGATGATGTCATCAATGTCTGCTGCAAAGCCACTGTCGCTTGA 832
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 794 GGAGATCATCCATCTCTGGATGATGTCATTAATGTCTGCTGCAAAGCCACTGTTGCTTGA 853
Query 833 AACATATTGGATCAAAGTCTCT-------------A-A---AA---TCACTGTATATTTG 872
||||||| |||||||||||||| | | || ||||||||||||||
Sbjct 854 AACATATGGGATCAAAGTCTCTCTGGTTTGTCCTCATACTTAAAAATCACTGTATATTTG 913
Query 873 TAGCTATGAAATAGTGTCTATATTTCTT-AAGTTTTGGAGAAAGTATCAACACTCAGAAG 931
||||||||||||| |||||||||||||| ||| |||||| |||||||||||||| |||||
Sbjct 914 TAGCTATGAAATAATGTCTATATTTCTTTAAGCTTTGGAAAAAGTATCAACACTAAGAAG 973
Query 932 TAAGAGCAACATATGTCCAAGTCCAATCTCTCTCATACAGATTAT-TCGATTTG-GTAAG 989
| ||||||||||||||||||||||| ||||||||| | | | || | ||||| |||||
Sbjct 974 TTAGAGCAACATATGTCCAAGTCCAGTCTCTCTCAC-C-GCTCATGTAGATTTTTGTAAG 1031
Query 990 ATGTCGACAATTCATTGAAACCACACAAGTCTTTTCTAATGTAAGACAAGACAAGACAAG 1049
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1032 ATGTCGACAATTCATTGAAACCACACAAGTCTTTTCTAATGTAAT----G-CAAGACAAG 1086
Query 1050 TGTTTGGTTTGTTATTAGAATAAAATTTGTCGTTCTCACTAGTGCATAGAAATTAAAAAA 1109
|||||||||||||||||| |||||||||||| || ||||||||||||||||| |
Sbjct 1087 TGTTTGGTTTGTTATTAGGATAAAATTTGTCTTTTTCACTAGTGCATAGAAAATG----- 1141
Query 1110 TGTTTGTATTTATTTGAACTCTGCACTA 1137
||||||||||||||||||||||||||||
Sbjct 1142 TGTTTGTATTTATTTGAACTCTGCACTA 1169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55973607675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5