BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496820
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65850.1 | Symbols: | F-box and associated interaction doma... 1624 0.0
AT2G31470.1 | Symbols: DOR | F-box and associated interaction d... 141 2e-32
AT3G23960.1 | Symbols: | F-box and associated interaction doma... 91.6 2e-17
AT1G53550.1 | Symbols: | F-box family protein | chr1:19983411-... 67.6 3e-10
> AT5G65850.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:26346314-26347610 FORWARD LENGTH=1297
Length=1297
Score = 1624 bits (879), Expect = 0.0
Identities = 1086/1186 (92%), Gaps = 14/1186 (1%)
Strand=Plus/Plus
Query 1 ATGAGAAGACGGCGGAGAAATGTTTCGAAGGACCGTCTTACCATCAGCACCCGACGCAGT 60
||||||| || ||||||||||||| || || | ||||||||||| | |||| || ||
Sbjct 4 ATGAGAACACTGCGGAGAAATGTTACGGAGAATCGTCTTACCAT---CTCCCGGCGTAGA 60
Query 61 A-GGAGGAAGAAGACCTCACCGAATGGAATAGAAAACTCAGTCCAGATCCCAGTTGATAT 119
| ||| ||||||||||||||||||| || |||||| |||||||||||||||||||||||
Sbjct 61 ACGGA-GAAGAAGACCTCACCGAATAAAACAGAAAAGTCAGTCCAGATCCCAGTTGATAT 119
Query 120 CATTATCGAGATACTCTTGAGATTGCCGGCGAAATCTATAGCGACATGTCGTTGCGTGTC 179
||| |||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 120 CATCATCGAGATACTCCTGAGATTACCGGCAAAATCTATAGCGACATGTCGTTGCGTGTC 179
Query 180 GAAGCTTTGGGGCTCCGTAATTTGCCGTCAAGATTTCACGGATTTGTTCTTGACCAGATC 239
||| || ||| ||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 180 GAAACTCTGGATCTCCGTAATTTGCCGTCAAGATTTCACAGAGCTGTTCTTGACCCGATC 239
Query 240 TTTGCATCGACCGCAACTCTTGTTCTCCTGCAAAAAAGATGGTAACTTGTTCTTCTTCTC 299
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 240 TTTGCATCGACCGCAACTCTTATTCTGCTGCAAAAAAGATGGTAACTTGTTCTTCTTCTC 299
Query 300 GTCACCTCAGCTTCAAAATCCATATGAGAACTCTTCCGCCATTTCTCTTATGAATTTCTC 359
||| ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||
Sbjct 300 GTCTCCTCAGCTTCAAAATCCATATGAGAACTCGTCCGCCATTTCTCTAAAGAATTTCTC 359
Query 360 CTTAAGTTCTAAAATTTCTCGTCCTGTCAATGGCTTGATCTGTTTTAAACGTAAGGAAAC 419
|||| | | ||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 360 CTTATGCTATAAAATTTCGCGTCCTGTCAATGGCTTGATCTGTTTTAAACGCAAGGAAAT 419
Query 420 GAACGAAACAGTGACAGTGATATGTAATCCTAGTACTGGACATACCTTAAACTTACCTAA 479
|||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||
Sbjct 420 GAACGAAACAGTGACAGTGATATGTAATCCCAGCACTGGACATACCTTAAGCTTACCTAA 479
Query 480 ACC-A-G-CGACGAGTATTGGGGCGAT-GAGCTTTCTCGTGTATGAACCGGTTGAGAAAC 535
||| | | ||||||||||||| || | || ||| |||||||||||||| || ||||||
Sbjct 480 ACCAATGAAGACGAGTATTGGGCCG-TCAAGATTTTTCGTGTATGAACCGATTCAGAAAC 538
Query 536 AGTTCAAGGTATTGTTGTCATATGAAAGTGAGGAGCATCAAGTTCTGACACTAGGAACTG 595
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 539 AGTTCAAGGTATTGTTGTCATATAAAAGTGATGAGCATCAAGTTCTGACACTAGGAACTG 598
Query 596 GAGAACTGTCATGGAGAATGATTGAATGTTCCATACCTCATATTCCTGGATTGTCTGAGA 655
||||||||||||||||||| || ||||||||||| ||||| |||| |||| |||||||||
Sbjct 599 GAGAACTGTCATGGAGAATCATCGAATGTTCCATGCCTCACATTCTTGGAATGTCTGAGA 658
Query 656 TATGCATCAATGGTGTTTTGTATTATCCAGCGATCGATTTGTCTTCAGGGGATTACATTA 715
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 659 TATGCATCAATGGTGTGTTGTATTATCCAGCGATCAATTTGTCTTCAGGGGATTACATTA 718
Query 716 TCGTTTGCTTCGATGCTAGGTCCGAGAAGTTTAGATTTATTACAGTCATGGAAGATTTCA 775
||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 719 TCGTTTGCTTCGATGTTAGGTCAGAGAAGTTTAGATTTATTACAGTCATGGAAGAGTTCA 778
Query 776 TTAAAGCAGCGCATGATGGAATTCTGATTAACTACAATGGTAAATTAGCTTCACTTGTTT 835
||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 779 TTAAAGCAGCGCATGATGGAACTCTTATAAACTACAATGGTAAATTAGCTTCACTTGTTT 838
Query 836 CTGAAAGGGGTTGCTTTGTTGATGGACGTAGTAAAACTATTGAGTTGTGGGTTCTACAAG 895
||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 839 CTGAAAGATATTGCTTTGTTGATGGACGTAGTAAGAGTATTGAGTTGTGGGTTCTACAAG 898
Query 896 ATGCTGAAAAGCAGGAATGGTCGAAGCTTATATACGTATTGCCCGCTTGGTGGCAGGATA 955
||||||||||| ||||||||||||||| || |||||||| ||||||||||||||| |||
Sbjct 899 ATGCTGAAAAGAAGGAATGGTCGAAGCATACGTACGTATTACCCGCTTGGTGGCAGCATA 958
Query 956 TGG-TTGGAACCCTCGA-TTTACGCTTTGTTGGAGTGACTCGTACAAACGAAATTATGTT 1013
|| |||||||||| || |||||||||||||||||||||||||||||| || ||||||||
Sbjct 959 -GGATTGGAACCCT-GAATTTACGCTTTGTTGGAGTGACTCGTACAAATGAGATTATGTT 1016
Query 1014 GTCGCCGTGCTATCAAACAGTGCCTTTCGACGTCTTCTACTTCAATATTGAGAAAAAGAC 1073
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1017 GTCGCCGTGCTATCAAACAGTGCCTTTCGACGTCTACTACTTCAATATTGAGAGAAAGAC 1076
Query 1074 GATGATAAGTGTTGCAATACAAGGAATGGAAGCGTTTCAGGGTCACATAGTCCTCACCTA 1133
|||||| || |||||||||||||||||||||||||||||||||||| ||||| |||| ||
Sbjct 1077 GATGATGAGCGTTGCAATACAAGGAATGGAAGCGTTTCAGGGTCACTTAGTCTTCACATA 1136
Query 1134 TTTAGACCATGTAGAAAACGTGAAGCTTCTGCAAAACATTTTTTAA 1179
||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1137 TTTAGACCATGTAGAAAACGTGAAGCTTCTGCATAACATGTTTTAA 1182
> AT2G31470.1 | Symbols: DOR | F-box and associated interaction
domains-containing protein | chr2:13407492-13408655 REVERSE
LENGTH=1164
Length=1164
Score = 141 bits (76), Expect = 2e-32
Identities = 443/612 (72%), Gaps = 57/612 (9%)
Strand=Plus/Plus
Query 568 GAGCATCAAGTTCTGACACTAGGAACTGGAGAA-CTGTCATGGAGAATGATTGAATGTTC 626
|||||| | ||||||||| |||||||| ||||| || || ||||||| ||| ||||||||
Sbjct 586 GAGCATTATGTTCTGACATTAGGAACT-GAGAACCTCTCTTGGAGAAGGATCGAATGTTC 644
Query 627 CATACCTCATATTCCTGGATTGT-CTGAGATATGCATCAATGGTGTTTTGTATTATCCAG 685
||||| ||| ||| ||| || | | ||||||||||||||||||||||||||||| ||
Sbjct 645 TATACCCCATGTTCATGG-TTCTAAAGGGATATGCATCAATGGTGTTTTGTATTATCGAG 703
Query 686 CGAT--C-GATTTGTCTTCAGGGGA-TT-ACATTATCGTTTGCTTCGATGCTAGGTCCGA 740
| | | || ||| |||||| | || | || || |||||||| |||| ||||| ||
Sbjct 704 CAAAGGCTGACATGTTTTCAGGT-ACTTTA-ATGATAGTTTGCTTTGATGTTAGGTTTGA 761
Query 741 GAAGTTTAGATTTATTACAGTCATGGAAGATTTCATTAAAGCAGCGCATGATGGAATTCT 800
|||||| || | ||||| | || || || | | | | | | | | | | ||
Sbjct 762 GAAGTTCAGCTATATTAAAATCTTG-AA-AC--C-T-ACA--A-C--A--AC----T-CT 803
Query 801 GATTAACTACAATGGTAAATTAGCTTCACTTGTTTCTGAAAGGGGTTGCTTTGTTGATGG 860
||||| |||||| |||||||| |||||||| || | ||| ||| || ||| ||
Sbjct 804 GATTAGCTACAACGGTAAATTGGCTTCACTAGTGTGGGAA-GGGC---CTA-GTT-ATAT 857
Query 861 ACGTAGTAAAAC-TATTGAGTTGTGGGTTCTACAAGATGCTGAAAAGCAGGAATGGTCGA 919
|| | ||||| | |||| |||||||| || ||| | ||||| || ||||||| ||
Sbjct 858 TTGTGG-AAAACGTTTTGAAATGTGGGTTTTAGGAGACCCCGAAAAACATGAATGGTTGA 916
Query 920 AGCTTA-TATACGTATTGCC-CGCTTGGTGGCAGGATATGGTTGGA-ACC-CTCGATTTA 975
||| || | |||| ||||| | || |||||||| || | ||||| | || | || |
Sbjct 917 AGCATACT-TACGAATTGCGTC-CTCGGTGGCAGAATGTACTTGGAGAGGACTTG-TTAA 973
Query 976 CGCTTTGTTGGAGTGACTCGTACAAACGAAATTATGTTGTCGCCGT-GCTATCAAACAGT 1034
|||| |||| ||||| ||||||| |||||| |||||||||| | |||| | |
Sbjct 974 TT-TTTGCTGGAATGACTGGTACAAATGAAATTGTGTTGTCGCCAAAG-TATCCATCTCA 1031
Query 1035 GCCTTTCGACGTCTTCTACTTCAATATTG-AGAAAAAGACGATGATAAGTGTTGCAATAC 1093
|||||| | || ||||||| |||| ||| ||| || || || | ||| |||| ||| |
Sbjct 1032 CCCTTTCTATGTTTTCTACTACAAT-TTGGAGAGGAATACTATCAGAAGAGTTGAAATCC 1090
Query 1094 AAGGAATGGAAGCGTTTCAGGGTCACAT-A-G-TCCTCACCTATT-TAGACCATGTAGAA 1149
||||||||| ||||||| ||| | | || | | | || || || |||||||||||||
Sbjct 1091 AAGGAATGGGAGCGTTTAAGGTT-A-ATGAAGATTA-CATCT-TTCTAGACCATGTAGAG 1146
Query 1150 AACGTGAAGCTT 1161
| |||||||||
Sbjct 1147 GATGTGAAGCTT 1158
> AT3G23960.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8657736-8658944 FORWARD LENGTH=1209
Length=1209
Score = 91.6 bits (49), Expect = 2e-17
Identities = 101/125 (81%), Gaps = 8/125 (6%)
Strand=Plus/Plus
Query 563 GTGAGGAGCATCAAGTTCTGACACTAGGAACTGGAGAA-CTGTCATGGAGAATGATTGAA 621
|||||| | |||||||||| ||||||||||||||| || ||||||||||||||||| ||
Sbjct 608 GTGAGGGGTATCAAGTTCTAACACTAGGAACTGGA-AAGCTGTCATGGAGAATGATCAAA 666
Query 622 TGTTCCAT-ACCT--C-ATATTC-CTGGATTGT-CTGAGATATGCATCAATGGTGTTTTG 675
|||| | | | || | | || | || | | |||||||||||||||||||||||||
Sbjct 667 TGTTGCTTAAACTACCAACATCCTCTTAAAAATAGTGAGATATGCATCAATGGTGTTTTG 726
Query 676 TATTA 680
|||||
Sbjct 727 TATTA 731
> AT1G53550.1 | Symbols: | F-box family protein | chr1:19983411-19984637
FORWARD LENGTH=1227
Length=1227
Score = 67.6 bits (36), Expect = 3e-10
Identities = 99/127 (78%), Gaps = 13/127 (10%)
Strand=Plus/Plus
Query 568 GAGCATCAAGTTCTGACACTAGGAACTGGAGAA-CTGTCATGGAG-AATGATTGAATGTT 625
||| |||||||||||||| |||| |||| || | |||||||| ||| | | ||||||
Sbjct 622 GAGTATCAAGTTCTGACATTAGGGTTTGGA-AATATTTCATGGAGAAAT-ACTCAATGTT 679
Query 626 CCATACCTCA-TAT-T-CCTG--GATTGTCTGAG-ATATGCATCAATGGTGTTTTGTATT 679
| || ||| ||| | | || ||| | || | |||||||||||||||||||||||||
Sbjct 680 GCGTAGTTCATTATCTACTTGAAGATAG--TG-GTATATGCATCAATGGTGTTTTGTATT 736
Query 680 ATCCAGC 686
|||||||
Sbjct 737 ATCCAGC 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57881228385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5