BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496822
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65860.1 | Symbols: | ankyrin repeat family protein | chr5:... 1378 0.0
> AT5G65860.1 | Symbols: | ankyrin repeat family protein | chr5:26347593-26349044
REVERSE LENGTH=1452
Length=1452
Score = 1378 bits (746), Expect = 0.0
Identities = 961/1056 (91%), Gaps = 49/1056 (5%)
Strand=Plus/Plus
Query 1 CTCCTATTATCTCATGTTCCATTATTTTGTT-AATTCTAATTTGAAATATTAATTTCGTT 59
||||||||||||||||||||||| |||||| | ||| |||||||||||||| |||| ||
Sbjct 14 CTCCTATTATCTCATGTTCCATT-GTTTGTTGATTTC-AATTTGAAATATTAGTTTC-TT 70
Query 60 TCTTCTT-CC-T-A-----T--AC-----TA--A-TTTACTGTTATCTATTGATTTCAAA 101
||||||| || | | | || || | ||| ||||||||||||||||| |||
Sbjct 71 TCTTCTTCCCTTCATTCCTTCAACTTTTATACCATTTTCCTGTTATCTATTGATTTGAAA 130
Query 102 GTTTTAAATTTTTTAGAGGCGGTGATGACAAAAAACATTTCTCGATGCTGAAACTTACTC 161
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 GTTTT-AATTTTTAAGAGGCGGTGATGACAAAAAACATTTCTCGATGCTGAAACTTACTC 189
Query 162 GAGGGACCAATTCACTCTTGTAATCTTTCATGATGCTTGTTTTTATGCGTGTCTGAGCCT 221
||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 190 GAGAGACCAAATCACTCTTGTAATCTTTCGTGATGCTTGTTTTTATGCGTGTCTGAGCCT 249
Query 222 AAA--AAATGCTTTTTCTCATTTATGATTTGATTATCATAGATCTC-A---A-------- 267
||| ||| | || ||||||||| ||||||||||||||||| | | |
Sbjct 250 AAACCAAA-AAATCTT-TCATTTATGCTTTGATTATCATAGATCCCAATTTATGCGTTTC 307
Query 268 -TTTA-TGCTTTTCAATTTCTAATTAGAGTTTTGCTTCATTTTCAT-CAGCCATGGAAGA 324
|||| ||||||||||||| |||| ||||||||||| ||||| | |||||||||||||
Sbjct 308 TTTTATTGCTTTTCAATTTGTAATGCGAGTTTTGCTTTATTTT-GTCCAGCCATGGAAGA 366
Query 325 AGCAGATCAGTTATGTTTAGCTGCTAAATCCGGCGACTTGAAAAAGGTTCAATCTTTAAT 384
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 367 AGCAGATCAGTTATGTTTAGCTGCTAAATCCGGCGACTTGAAAAAGGTTCAAACTTTAAT 426
Query 385 AAACTCCGGCGCCGACCTTACTCACTTTGACAAGGACGGTCTAACGCCGTTAATGCACGC 444
|||||||||||||| ||||||||||||| || |||||| |||||||||||||||||||
Sbjct 427 TTACTCCGGCGCCGACGTTACTCACTTTGATAACGACGGTTTAACGCCGTTAATGCACGC 486
Query 445 CGCTAAAATCGGAAACGCGGAGATAGTAACGGCGTTACTCGAATCCGGAGCTCCATGGAA 504
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 487 CGCTAAAATCGGAAACGCAGAGATAGTAACGGCGTTACTCGAATCCGGAGCTCCATGGAA 546
Query 505 CGCATTAACTCCATCAAATCTCTCAGCGGGAGATTTCGCCATGGAAGCAGGACACCAAGA 564
||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 547 CGCATTATCTCCATCAAATCTCTCAGCAGGAGATTTCGCCATGGAAGCAGGACATCAAGA 606
Query 565 AACCTTT-GATCTTCTTCTCAAAACCGGAATCCAATCAGAGCTAATCTTAGGAACAATCG 623
|| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 607 AA-CTTTCGATCTTCTTCTCAAAACCGGGATCCAATCAGAGCTAATCTTAGGAACAATCG 665
Query 624 CGAGAAACCAAACCAAGAACGAGTACTCTAATCAAGAATATCTTCAAGATC-GAGTTAGT 682
| ||||||||||| |||||||| || ||||||||||||||||||||||| | ||||||||
Sbjct 666 CAAGAAACCAAACAAAGAACGAATATTCTAATCAAGAATATCTTCAAGA-CAGAGTTAGT 724
Query 683 TTCAGTGAAGACAAGTTAATGGATAGTGAAAGCAAAGGTGTGATGATGGCTTGGGAAAAA 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 TTCAGTGAAGACAAGTTAATGGATAGTGAAAGCAAAGGTGTGATGATGGCTTGGGAAAAA 784
Query 743 CCATTAATGGAAGCTCACGCTAAAGCTATTTGTATCAATGGTGGTCACATTCTAAACGTT 802
||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||
Sbjct 785 CCATTAATGGAAGCTCACGCTAAAGCTATTTGTCTCAACGGTGGTCACATTCTTAACGTT 844
Query 803 GGATTCGGTATGGGACTTGTCGATACAGCGATTCGACGATACAATCCTAG-TAAACACAC 861
|| ||||||||||||||||||||||||||||||| |||||||||||| | |||||||||
Sbjct 845 GGTTTCGGTATGGGACTTGTCGATACAGCGATTCAACGATACAATCC-GGTTAAACACAC 903
Query 862 GATCATTGAAGCTCATCCTGAAGTTTATAAGCGTATGATTGAATCTGGTTGGGGAGAGAA 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 GATCATTGAAGCTCATCCTGAAGTTTATAAGCGTATGATTGAATCTGGTTGGGGAGAGAA 963
Query 922 AGAGAATGTGAAGATTGTTTTTGGAAGATGGCAAGATGTTCTTGATAAGCTTGATGATGA 981
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 964 AGAGAATGTGAAGATTGTTTTTGGAAGATGGCAAGATGTTCTTGATAAGCTTGATGATAA 1023
Query 982 TTCGTTTGATGGGATCTTCTTTGACACTTATGGTGA 1017
||| |||||||||||||| ||||| |||||||||||
Sbjct 1024 TTCTTTTGATGGGATCTTTTTTGATACTTATGGTGA 1059
Score = 446 bits (241), Expect = 3e-124
Identities = 257/264 (97%), Gaps = 3/264 (1%)
Strand=Plus/Plus
Query 1018 CATCTTCCGAGGGCTGTTGAAGCCTGATGG-GATTTATTCGTTTTTCAATGGGTTTTGTG 1076
|||||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||
Sbjct 1091 CATCTTCCGA-GGCTGTTGAAGCCTGATGGTG-TTTATTCGTATTTCAATGGGTTTTGTG 1148
Query 1077 GGAGCAATGCGTTTTTTCATGTTGTGTATTGCAATTTGGTGACTTTGGAGATTGAGAATT 1136
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 GAAGCAACGCGTTTTTTCATGTTGTGTATTGCAATTTGGTGACTTTGGAGATTGAGAATT 1208
Query 1137 TAGGGTTTAGCACTCAGTTGATTCCATTGCCGGTTAAGGATTGTCTTGGGGATGAAGTTT 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 TAGGGTTTAGCACTCAGTTGATTCCATTGCCGGTTAAGGATTGTCTTGGGGATGAAGTTT 1268
Query 1197 GGGAAGGTGTCAAGCAAAAGTATTGGCAGCTTGATACTTATTATCTCCCTGTTTGTCAGT 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 GGGAAGGTGTCAAGCAAAAGTATTGGCAGCTTGATACTTATTATCTCCCTGTTTGTCAGT 1328
Query 1257 TCAGTGACTGAAGAAGTTTTATGA 1280
| ||||||||||||||||||||||
Sbjct 1329 TTAGTGACTGAAGAAGTTTTATGA 1352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62951483430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5