BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496826
Length=1867
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65900.1 | Symbols: | DEA(D/H)-box RNA helicase family prot... 2237 0.0
AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosp... 449 4e-125
> AT5G65900.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:26358206-26361443 FORWARD LENGTH=2223
Length=2223
Score = 2237 bits (1211), Expect = 0.0
Identities = 1401/1492 (94%), Gaps = 15/1492 (1%)
Strand=Plus/Plus
Query 385 gaagaagaagacaaagtggaggaaacaagtATAATGACTAATGAAACGTTTGAGTCATTG 444
||||||||| | ||| |||| ||||| || |||||||||||| |||||||||||||||||
Sbjct 540 GAAGAAGAAAAAAAATTGGAAGAAACTAGCATAATGACTAATAAAACGTTTGAGTCATTG 599
Query 445 TCATTATCTGATAACACCTATAAATCTATCAAGGAGATGGGTTTTGCACGCATGACTCAG 504
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCATTATCTGATAACACTTATAAATCTATCAAGGAGATGGGTTTTGCACGCATGACTCAG 659
Query 505 ATACAAGCTAAAGCAATTCCACCATTGATGATGGGAAAAGATGTACTTGGAGCTGCCAGG 564
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 660 ATACAAGCTAAAGCAATTCCACCATTGATGATGGGAGAAGATGTACTTGGAGCTGCCAGG 719
Query 565 ACCGGTTCTGGTAAAACCTTAGCTTTTCTTATTCCTGCTGCAGAGCTTCTATACCATGTC 624
|||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||
Sbjct 720 ACCGGTTCTGGTAAAACCTTAGCTTTTCTTATTCCTGCTGTTGAGCTTCTTTACCGTGTT 779
Query 625 CGGTTTACTCCTCGCAATGGAACTGGTGTTATCGTCATTTGCCCAACAAGAGAGCTTGCT 684
|||||||||||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct 780 AAGTTTACTCCTCGCAATGGAACTGGTGTTCTTGTTATTTGCCCAACAAGAGAGCTTGCT 839
Query 685 ATTCAGTCTTATGGAGTAGCAAAAGAACTTCTTAAGTATCATTCACAGACTGTGGGAAAA 744
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ATTCAGTCTTATGGAGTGGCAAAAGAACTTCTTAAGTATCATTCACAGACTGTGGGAAAA 899
Query 745 GTTATTGGCGGTGAGAACAGAAAGAAAGAAGCTGAGATTCTTGCCAAAGGTGTTAATTTA 804
||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||
Sbjct 900 GTTATTGGCGGTGAGAAAAGAAAGACAGAAGCTGAGATTCTTGCGAAAGGTGTTAATTTA 959
Query 805 TTAGTAGCTACCCCTGGAAGGCTTCTCGACCACCTTGAAAATACAAATGGTTTTGTATTC 864
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | |||
Sbjct 960 TTAGTAGCTACCCCTGGAAGACTTCTCGACCACCTTGAAAATACTAATGGTTTTATTTTC 1019
Query 865 AAGAACTTGAAGCTTT-TTGTAATGGATGAGGCTGATAGGATATTGGAACAGAACTTTGA 923
|||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AAGAACTTAAAG-TTTCTTGTAATGGATGAGGCTGATAGGATATTGGAACAGAACTTTGA 1078
Query 924 AGAGGACCTGAAGAAGATTATTAAAC-TTCTACCAAAGACTAGACAGACGTCACTGTTTT 982
||| ||||| ||||||||| || ||| |||||||||||||||||||||||||||| ||||
Sbjct 1079 AGAAGACCTCAAGAAGATT-TTGAACCTTCTACCAAAGACTAGACAGACGTCACTATTTT 1137
Query 983 CCGCCACACAGAGCGCAAAGGTTGAGGATCTTGCTCGGGTGTCACTTGCCTCACCTGTTT 1042
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1138 CAGCCACACAGAGCGCAAAGGTTGAGGATCTTGCTCGGGTGTCACTTACCTCACCTGTTT 1197
Query 1043 ATATCGATGTGGATGAAGGACGAAAAAAGGTTACAAATGAAGGCTTGGAGCAAGGTTATT 1102
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1198 ATATTGATGTGGATGAAGGACGAAAAGAGGTTACAAATGAAGGCTTGGAGCAAGGTTATT 1257
Query 1103 GCGTTGTGCCAAGTGGGATGCGGTTA-TTATTTTTACTTACCTTCTTGAAGAGATTCCAT 1161
||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||
Sbjct 1258 GCGTTGTGCCAAGTGCGATGCGGTTACTT-TTTTTACTTACCTTCTTGAAGAGATTCCAA 1316
Query 1162 GGGAAAAAGAAAATCATGGTGTTTTTCTCTACATGCAAATCGACAAAGTTCCACGCCGAA 1221
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1317 GGGAAAAAGAAAATTATGGTGTTTTTCTCTACATGCAAGTCGACAAAGTTCCACGCCGAG 1376
Query 1222 CTCTTTCGATATATCAAATTAGATTGCCTTGAAATCCGTGGAGGGATAGACCAGAGCAAA 1281
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1377 CTCTTTCGATATATCAAATTCGATTGCCTTGAAATCCGTGGAGGGATAGACCAGAACAAA 1436
Query 1282 AGAACTTCAACATTATTCCAATTCATCAAGGCGGAAACCGGTATTTTGTTGTGTACTAAT 1341
|||||| ||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1437 AGAACTCCAACATTTTTGCAATTCATAAAGGCGGAAACCGGTATTTTGTTGTGTACTAAT 1496
Query 1342 GTTGCTGCCCGAGGTCTTGATTTTCCTCATGTGGACTGGATTGTGCAATATGATCCTCCA 1401
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1497 GTCGCTGCCCGAGGTCTTGATTTTCCTCATGTGGACTGGATTGTGCAGTATGATCCTCCT 1556
Query 1402 GATAACCCAACGGAATATATTCATAGAGTTGGTAGAACAGCTCGTGGAGAAGGAGCAAAA 1461
|||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1557 GATAACCCAACGGATTATATTCATCGAGTTGGTAGAACAGCTCGTGGTGAAGGAGCAAAA 1616
Query 1462 GGAAAGGCTCTGCTTGTCCTTACTCCAGATGAGTT-ACAGTTTATTCAGTATCTCAAGGC 1520
|||||||||||||||||||| |||||| | ||||| | ||||||| ||||||||||||||
Sbjct 1617 GGAAAGGCTCTGCTTGTCCTAACTCCACAGGAGTTGA-AGTTTATACAGTATCTCAAGGC 1675
Query 1521 GGCGAAAATTCCTGTTGAGGAACATGAATTTGAAGAAGGGAAATTGCTCGACGTGAAATC 1580
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
Sbjct 1676 GGCGAAAATTCCTGTTGAGGAACATGAATTTGAAGAAAAGAAATTGCTCGATGTGAAACC 1735
Query 1581 TTTTCTGGAGGATTTGATATCTAAAAACTATGCATTAAACGAGTCAGCAAAAGAAGCATA 1640
|||| ||||| ||||||||||| ||||||||||||| || ||||||||||||||||||||
Sbjct 1736 TTTTGTGGAGAATTTGATATCTGAAAACTATGCATTGAAGGAGTCAGCAAAAGAAGCATA 1795
Query 1641 CAAGACTTACATTTCAGGATATGATTCTCACTCTATGAAAGACATCTTTAATGTTCACCG 1700
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1796 CAAGACATACATTTCAGGATATGATTCTCACTCTATGAAAGATGTCTTTAATGTTCACCA 1855
Query 1701 ACTCGATCTC-CAGGAGGTTGCGGCTTCGTTCGGTTTCTCAGATCCTCCCAAAGTTGCTC 1759
|||| ||||| | |||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1856 ACTCAATCTCAC-GGAGGTTGCGACTTCGTTTGGTTTCTCAGATCCTCCCAAAGTTGCTC 1914
Query 1760 TGAAGACAGATCGAGGAGGGTACAAGA-GTAAGAGAGAACCGGTTAATAAGTTTAACAGA 1818
|||||| ||||||||||||||||| || |||||||||||||||||||||||||||| |||
Sbjct 1915 TGAAGATAGATCGAGGAGGGTACA-GAAGTAAGAGAGAACCGGTTAATAAGTTTAAGAGA 1973
Query 1819 GGTCGTGGTGGT---AGACGCGGCGGTAAAAGCAAGTTCGAGAGGTACTAAA 1867
|||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1974 GGTCGTGGTGGTGGTAGACCCGGCGGTAAAAGCAAGTTCGAGAGGTACTAAA 2025
Score = 370 bits (200), Expect = 3e-101
Identities = 306/354 (86%), Gaps = 19/354 (5%)
Strand=Plus/Plus
Query 25 AATTGCAGACGAATTTCGATTTC----T---AAATTCAATAAGAGCTTTGGATTTGGCTG 77
|||| |||||||||| ||||||| | |||| | |||||||||||||||||||| |
Sbjct 50 AATTTCAGACGAATTCCGATTTCTTAATCAAAAATCCGATAAGAGCTTTGGATTTGGCGG 109
Query 78 CGAATAAGAAAACATGGCGAATTTGGATTTGGAGCAGCATTCATCTgaaaacgaagagat 137
|||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||
Sbjct 110 CGAATAAGAAAACATGGCGAATTTGGATATGGAGCAACATTCATCCGAAAACGAAGAGAT 169
Query 138 taagaagaagaagcataagaaaagagcgagagacgaagctaagaaactaaagcagcgaga 197
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 170 TAAGAAGAAGAAGCATAAGAAAAGAGCGAGAGACGAAGCTAAGAAACTAAAGCAGCCAGC 229
Query 198 aaTTGATGAAGAAAAACCCGAGCATGAAGATGGTGATGACGAAGAGAACAAACCGTTAGT 257
||| | |||||| ||||||| |||||||||||||||| | |||||||||| ||||| |
Sbjct 230 AAT-G--GAAGAAGAACCCGATCATGAAGATGGTGATGCCAAAGAGAACAATGCGTTAAT 286
Query 258 TgaagaagaaccgaagaagaagaagaagCT-AAA-----GCAGCGTGGAGATGCTGATGA 311
||| |||||||||||||||||||||||| ||| | ||||||||||| |||||||
Sbjct 287 TGACGAAGAACCGAAGAAGAAGAAGAAGAAGAAAAATAAGAAGCGTGGAGATACTGATGA 346
Query 312 CGATGCTGATGACgaagagataacagaagaagagccgaagaagaagaagaggaa 365
| | || ||||||| | || ||||||||||||||||||||||||||| |||
Sbjct 347 TG--GA-GAGGACGAAGCGGTAGCAGAAGAAGAGCCGAAGAAGAAGAAGAAGAA 397
> AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:6399571-6403348
REVERSE LENGTH=2006
Length=2006
Score = 449 bits (243), Expect = 4e-125
Identities = 1016/1376 (74%), Gaps = 105/1376 (8%)
Strand=Plus/Plus
Query 415 ATAATGACTAATGAAACGTTTGAGT-CATTGTCATTATCTGA-TAACACCTATAAATCTA 472
||||||||||||| || ||||| | | | | | |||||||| || || | || | |||
Sbjct 399 ATAATGACTAATGTGACTTTTGATTCCCTCGAC-TTATCTGAGCAA-ACTTCTATAGCTA 456
Query 473 TCAAGGAGATGGGTTTTGCACG--CATGACTCAGATACAAGCTAAAGCAATTCCA--CCA 528
||||||||||||| ||| || | |||||| || || |||||| | ||||| || ||
Sbjct 457 TCAAGGAGATGGGCTTT-CA-GTACATGACGCAAATTCAAGCTGGATCAATT-CAGCCCC 513
Query 529 TTGAT-GATGGGAAAAGATGTACTTGGAGCTGCCAGGACCGGTTCTGGTAAAAC-CTTAG 586
|| | || ||| || ||||| ||||| |||||||| || |||||||||||||| ||| |
Sbjct 514 TT-TTGGA-GGGGAAGGATGTTCTTGGTGCTGCCAGAACTGGTTCTGGTAAAACTCTT-G 570
Query 587 CTTTTCTTATTCCTGCTGCAGAGCTT-CTATACCATGTCCGGTTT-ACTCCTCGCAATGG 644
||||||| ||||| |||| ||| || || | | | | |||| |||||||||| ||
Sbjct 571 CTTTTCTCATTCCGGCTGTTGAG-TTGCTGTTTAAAGAGC-GTTTCTCTCCTCGCAACGG 628
Query 645 AACTGGTGTTATCGTCATTTGCCCAACAAGAGAGCTTGCTATTCAGTCTTATGGA-GTAG 703
|||||||| || || |||||||| ||||| || |||||||| ||| | || | || |
Sbjct 629 GACTGGTGTGATTGTTATTTGCCCCACAAGGGAACTTGCTATCCAGAC-TAAAAATGTGG 687
Query 704 CAAAAGAACTT-CTTAAGTATCATTCACAGACTGTGGGAAAAGTTATTGGCGGTGAGAAC 762
| || | || || ||| ||||||||||||| || | | |||||||| || | |||
Sbjct 688 C-GGAGGAGTTACTCAAGCATCATTCACAGACAGTCAGCATGGTTATTGGTGGCAATAAC 746
Query 763 AGAAAGAAAGAAGCTGAGATTC-TTGCCAAAGGTGT-TAA-TTTATTAGTAGCTACCCCT 819
|||| | ||||| | | | |||||| ||| | || || | | |||| || |||
Sbjct 747 AGAAGGTCGGAAGCACA-ACGCATTGCCAGTGGT-TCAAACTTGGTGA-TAGCAACTCCT 803
Query 820 GGAAGGCTTCTCGACCACCTTGAAAATACAAATGGTTTTGTATTCA-AGA-ACTTGAAGC 877
|| | ||||| ||||| ||| | |||||||| || ||| ||| | | | ||||||||
Sbjct 804 GGTCGTCTTCTTGACCATCTTCAGAATACAAA-GGCTTT-CATTTATAAACACTTGAAG- 860
Query 878 T-TTTTGTAATGGATGAGGCTGATAGGATATTGGAACAGAACTTTGAAGAGGACCTGAAG 936
| |||| || ||||| |||||||||||| ||||| |||| ||||| || ||| ||||
Sbjct 861 TGCCTTGTGATCGATGAAGCTGATAGGATACTGGAAGAGAATTTTGAGGAAGACATGAAT 920
Query 937 AAGATTATTAAA-CTTCTACCAAAGACTAGACAGACGTCACTGTT-TTC-C-GCCACACA 992
|||||| |||| || ||||||||||||| || || | | ||| ||| | ||||| ||
Sbjct 921 AAGATT-CTAAAGATTTTACCAAAGACTAGGCAAAC-T-GC-GTTATTCTCTGCCACCCA 976
Query 993 GAGCGCAAAGGTTGAGGATCTTGCTCGGGTGTCACTTG-CCTCACCTGTTTATATCGATG 1051
|| | | |||||| | |||||||||||||||||| ||| | ||||||||| || | ||||
Sbjct 977 GACCTCTAAGGTTAAAGATCTTGCTCGGGTGTCA-TTGACATCACCTGTTCATGTGGATG 1035
Query 1052 TGGATGAAGGAC-GAAAAAAGGTTACAAATGAAGGCTTGGAGCAAGGTTATTGCGTTGTG 1110
| ||||| || | || ||||| ||||||||||| ||||||||||| ||||| |||||
Sbjct 1036 TCGATGATGG-CAGACGCAAGGTGACAAATGAAGGATTGGAGCAAGGCTATTGTGTTGTT 1094
Query 1111 CCAAGTGGGATGCGGTTA-TTAT--TTTTACTTACCTTCTTG-AAGAGATTCCATGGGAA 1166
|| | | | | | |||| || || || |||| ||| || ||| || | ||
Sbjct 1095 CC--G-AGCAAACAAAGACTTATCCTTCTAATTTCCTTTTTGAAAAAGA-ACC-T---AA 1146
Query 1167 A-AAGAAA-ATCATGGTGTTTTTCTCTACATGCAAATC-G-ACAAAGTTCCACGCCGAAC 1222
| || ||| || ||||| |||||||| || ||||| || | || || ||||| | |||
Sbjct 1147 ATAA-AAAGATTATGGTATTTTTCTCGACTTGCAAGTCGGTAC-AA-TTCCATACGGAAA 1203
Query 1223 TCTTTCG-ATAT-ATCAAATTAGATTGCCT-TGAAATCCGTGGAGGGATAGACCAGAGCA 1279
|| | | | || | | | | || || || ||| || | |||||| || || |||| ||
Sbjct 1204 TC-AT-GAAAATAAGCGACGTGGA-TGTCTCTGATATTCATGGAGGCATGGATCAGAACA 1260
Query 1280 AAAGAACTTCAACATTATTCCAATTCATCAAGGCGGAA-ACCGGTATTTTGTTGTGTACT 1338
||||||| ||| || ||| | ||||| || || || | ||||| ||||| ||||||
Sbjct 1261 GAAGAACTAAAACCTTTTTCGACTTCATGAAAGC-AAAGAAAGGTATCTTGTTATGTACT 1319
Query 1339 AATGTTGCTGCCCGAGGTCTTGATTTTCC-TCATGTGGACTGGATTGTGCAATATGATCC 1397
|||||||||| || ||||| ||| |||| || |||||||||||| | || ||||||||
Sbjct 1320 GATGTTGCTGCTCGTGGTCTCGATATTCCTTC-CGTGGACTGGATTATACAGTATGATCC 1378
Query 1398 TCCAGATAACCCAACGGAATATATTCATAGAGTTGGTAGAACAGCTCGTGGAGAAGGAGC 1457
||||| || |||||||||||||| ||||| |||||| ||||||| ||||||||||||||
Sbjct 1379 ACCAGACAAGCCAACGGAATATATCCATAGGGTTGGTCGAACAGCCCGTGGAGAAGGAGC 1438
Query 1458 AAAAGGAAAGGC-TCTGCTTGTCCTT-ACTCCAGATG-AGTTACAGTTTATTCAG-TATC 1513
||| |||||||| | | ||||| ||| | ||| || | | || |||||||||| | || |
Sbjct 1439 AAAGGGAAAGGCAT-TACTTGT-CTTGATTCCTGAAGAACTT-CAGTTTATTC-GCTACC 1494
Query 1514 TCAAGGCGGCGAAAATTCCTGTTGAGGAACATGAATT---TGAAGAAG-GGAAATT-GCT 1568
| ||||| |||||| | |||||| | || | ||| || || ||||| || || | |
Sbjct 1495 TGAAGGCTGCGAAAGTACCTGTTAAAGAGCTTGAGTTCAATG-AGAAGAGG--CTTAG-T 1550
Query 1569 CGACGTGAAATCTTTTCTGGAG-GATTTGATAT-CTAAAAACTATGC-AT-TAAACGAGT 1624
| || ||||| |||||| || || | | | || |||| | || | ||| |||
Sbjct 1551 -AATGTTCAATCTGCGCTGGAGAAATGTG-T-TGCCAAGGACTA--CAATCTGAACAAGT 1605
Query 1625 CAGCAAAAGAAGCATACAAGACTTA-CATTTCAGGATATGATTCTCACTCTATGAAAGAC 1683
||| ||||| || |||| | |||| | | |||| ||| |||| |||||| ||||||||
Sbjct 1606 TAGCCAAAGATGCGTACAGGGCTTATC-TCTCAGCATACAATTCACACTCTTTGAAAGAC 1664
Query 1684 ATCTTTAATGTTCACCGACTCGATCTCCAGGAGGTTGCGGCTTCGTTCGGTTTCTC 1739
|||||||||||||||||||| || |||| || ||||| | |||||| | |||||
Sbjct 1665 ATCTTTAATGTTCACCGACTTGACCTCCTGGCTGTTGCTGAATCGTTCTGCTTCTC 1720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92419203345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5