BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496828
Length=1885
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65920.1 | Symbols: | ARM repeat superfamily protein | chr5... 2734 0.0
AT3G49810.1 | Symbols: | ARM repeat superfamily protein | chr3... 1072 0.0
> AT5G65920.1 | Symbols: | ARM repeat superfamily protein | chr5:26364015-26365998
REVERSE LENGTH=1984
Length=1984
Score = 2734 bits (1480), Expect = 0.0
Identities = 1725/1839 (94%), Gaps = 34/1839 (2%)
Strand=Plus/Plus
Query 64 ttttt-ttCTGTTCCTAGATTTCAAGGTTTACTATC--TTCTGAGACTCTGGGAACAATC 120
||||| ||||||||| ||||||||||||| |||||| |||||| ||||| |||||||||
Sbjct 144 TTTTTGTTCTGTTCCGAGATTTCAAGGTTCACTATCGATTCTGAAACTCTTGGAACAATC 203
Query 121 CAGATTTTTGGTTAGCAGGT-GGGAGAGCATTAATCATGTATTTATGATACACCGCTCTA 179
|||||| ||||||||||||| |||| ||||||||||||||||||||||||||| |||| |
Sbjct 204 CAGATTCTTGGTTAGCAGGTGGGGA-AGCATTAATCATGTATTTATGATACACTGCTCCA 262
Query 180 TTATTATTAC--CAGAGTTGAATGTTTCCTTTTTGAC-CGTTTTTAAAAGCTAAGGAAGA 236
|||||||||| ||||||||| |||||||||||||| |||||||||| || ||||||||
Sbjct 263 TTATTATTACGAGAGAGTTGAAAGTTTCCTTTTTGACTCGTTTTTAAAGGC-AAGGAAGA 321
Query 237 AGAAAGACTTTGTCTTTAAAATGCCAATGTTTCAGCCTTTTAAGACCGGTGGGTTTGATG 296
||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 322 AGAAAGACTTTGTTTTTAAAATGCCAATGTTTCAGCCTTCTAAGAACGGTGGGTTTGATG 381
Query 297 GGCATATCTTAGATCTACACACGGCGGTTAAAGACGGTGTGCTCGGCGGTTGCGGCGGCG 356
|||||||||||||||||||| ||||||||||||||||||| | | || |||||||
Sbjct 382 GGCATATCTTAGATCTACACTCGGCGGTTAAAGACGGTGT--T---C--TT--GGCGGCG 432
Query 357 GAGATGGGAAATTTGTGGTGGTTGTTACCGATGAGAAGAAGAAATTGGATTTGATGAAGA 416
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 433 GAGATGGGAAATTTCTGGTGGTTGTTACCGATGAGAAGAAGAAATTGGATTTGAAGGAGA 492
Query 417 TGATTTCTGAGCTGGAATTACCTGAAATACCCTCTGTTTTCATCTGTCCAATCTCTCTAG 476
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 493 TGATTTCTGAGCTGGAATTACCTGAAATACCCTCTGTTTTCATCTGTCCTATCTCTCTAG 552
Query 477 AGCCGATGCAAGATCCAGTGACCTTGTGTACTGGTCAAACCTACGAGAGGTCTAACATTC 536
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 553 AGCCGATGCAAGATCCAGTGACCTTGTGTACTGGTCAAACCTACGAGAGGTCCAACATTC 612
Query 537 TCAAATGGTTTAATTTAGGGCATTGTACATGCCCAACGACGATGCAAGAGCTTTGGGATG 596
|||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 613 TCAAATGGTTCAATATAGGGCATTGTACTTGCCCAACGACGATGCAAGAGCTTTGGGATG 672
Query 597 ATTTGGTCACTCCTAACAAGACTCTTCACCAATTGATCTACACTTGGTTTTCACAAAAGT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 673 ATTTGGTCACTCCTAACAAGACTCTTCACCAATTGATCTACACTTGGTTTTCACAGAAGT 732
Query 657 ATGTTTTGATGAAGAAACGATCTGAAGATGTGCAAGGAAGAGCTATTGAGATAT-TGGGT 715
|||||||||||||||||||||||||||||||||||||| | ||||||||||| | |||||
Sbjct 733 ATGTTTTGATGAAGAAACGATCTGAAGATGTGCAAGGACGTGCTATTGAGAT-TCTGGGT 791
Query 716 ACATTGAGAAAGGCTAAAGGGAAAGCAAAGGTTCATGCTTTAAGCGAGCTTAAGCAAGTT 775
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 ACGTTGAGAAAGGCTAAAGGGAAAGCAAAGGTTCATGCTTTAAGCGAGCTTAAGCAAGTT 851
Query 776 GTGATGGCTCACACTATTGCTAAGAAGACTGTTGTTGATGAAGGTGGAGTCTTTGTGATC 835
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 GTGATGGCTCACGCTATTGCTAAGAAGACTGTTGTTGATGAAGGTGGAGTCTTTGTGATC 911
Query 836 TCTTCTCTTTTAAGTCCTTTTACTTCTCATGCTGTTGGATCTGAGGCTATCGCGATTCTT 895
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 912 TCTTCTCTTTTAAGTCCTTTTACTTCTCACGCTGTTGGATCTGAGGCTATAGCTATTCTT 971
Query 896 GTTAATCTTGAGCTTGATTCTGATTCCAAAGCTGGATTGATGCAACCAGCTAGAGTTTCG 955
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 972 GTTAATCTTGAGCTTGACTCTGATTCCAAAGCTGGATTGATGCAACCAGCTAGGGTCTCG 1031
Query 956 TTGATGGTTGATATGTTGAATGATGGTTCGATTGAAACTAAAATCAATTGTGCTAGATTG 1015
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1032 TTGATGGTTGATATGTTGAATGATGGTTCGATTGAAACTAAGATCAATTGTGCTAGATTG 1091
Query 1016 ATAGGTAGGTTGGTGGAGGAGAAAGGTTTTAGAGCAGAGCTTGTTTCTAGTCATAGTTTG 1075
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 ATTGGAAGGTTGGTGGAGGAGAAAGGTTTTAGAGCAGAGCTTGTTTCTAGTCATAGTTTG 1151
Query 1076 CTTGTTGGATTAATGAGATTGGTTAAAGATAGGAGACGAAGAAACGGAGTTTCCCCTGCG 1135
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1152 CTTGTTGGATTAATGAGATTGGTTAAAGATAGGAGACGAAGAAACGGCGTTTCGCCTGCG 1211
Query 1136 TTAACGTTGCTCAAATCGGTTTCTGTTCATAAGCAAGTTAGAAACTTGTTGGTTAGGATT 1195
|||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1212 TTAACGCTGCTCAAATCGGTTTCTGTTCATAAACAAGTTAGGAACTTGTTGGTTAGGATT 1271
Query 1196 GGAGCAGTTCCTCAATTGGTTGATGTTTTGCCATGTTTAGATCCAGAGTGTTTGGAATCA 1255
|| ||||||||||||||||||||||||||||||||||| ||| |||||||| || |||
Sbjct 1272 GGTGCAGTTCCTCAATTGGTTGATGTTTTGCCATGTTTGGATGTGGAGTGTTTAGAGTCA 1331
Query 1256 GCTCTATTCGTGTTGGATTCGTTGTGTTTAGAAAGCGAAGGGAGAATCGCTTTGAAAGAT 1315
||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 1332 GCTCTTTTCGTGTTGGATTCGTTATGTTTAGAAAGCGAAGGCAGAATTGCTTTGAAAGAT 1391
Query 1316 TCGGTAAACACGATTCCGCATACCGTTAGGTTACTGATGAAGGTATCTGAGAAATGCACA 1375
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1392 TCGGTTAACACGATTCCGCATACCGTTAGGTTACTGATGAAGGTATCAGAGAAATGCACA 1451
Query 1376 AACTATGCGATATCAATACTCTGGTCAGTTTGCAAATTAGCTTCTGAAGAATGTTCATCT 1435
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 1452 AACTATGCGATATCGATTCTTTGGTCAGTTTGCAAATTAGCTTCTGAAGAATGTTCATCT 1511
Query 1436 CTTGCTGTTGAAGTTGGTTTGGCTGCAAAGCTTCTGCTTGTGATCCAAAGTGGATGCGAC 1495
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct 1512 CTTGCTGTTGAAGTTGGTTTGGCTGCAAAGCTTTTGCTTGTGATACAAAGTGGATGTGAT 1571
Query 1496 CCAGCTTTGAAGCAACGTTCGGCTGAGCTATTGAAGTTATGTAGTCTACATTATTCAGAC 1555
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1572 CCAGCTTTGAAGCAACGTTCAGCTGAGCTATTGAAGTTATGTAGTCTACATTATTCAGAC 1631
Query 1556 TCAATGTTTATCTCCAAATGTAAACTCACAAGAACAATCCAATAAAAGACT-AGTCAAGT 1614
||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||
Sbjct 1632 TCAATGTTTATCTCCAAATGTAAACTCACAAGAACTATCCAATAAAAGACTGA-TCAAGT 1690
Query 1615 TTTTCGCCTTTCGGGTCAAAATCACACAAGATGGATCTGCCCCATCTTGTTGATGTATAT 1674
||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1691 TTT-CACCTTTCGGGTCAAAATCACACAAC--GGATCTGCCCCATCTTGTTGATGTATAT 1747
Query 1675 AGAGATGAAGAA-C--AAGGAGTATGAGACAAAGAAACGAGTTTGG-T-TGTTGAATTCT 1729
||| |||||||| | ||||||||||||| ||||||||||||| | | |||||||||||
Sbjct 1748 AGAAATGAAGAAGCTCAAGGAGTATGAGAGTAAGAAACGAGTTTCGATGTGTTGAATTCT 1807
Query 1730 ACATTGCAATGTGATTGGA-T--TAATAGCTAAGTAGAAGCAAACTGTATAAATCTTTTT 1786
| ||||||||| ||| || | |||||| |||||||||| |||||||||||||||||||
Sbjct 1808 ATTTTGCAATGTTATTTGAATAATAATAGTTAAGTAGAAGTAAACTGTATAAATCTTTTT 1867
Query 1787 GTTATGTTTGGTTCAATATTCAGTAAAAGAATAGATTGAAGAAAGGAATCAttttttttG 1846
||| || |||||||| ||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1868 GTTGTGGTTGGTTCATTATTCAGTAGAAGAATAGATTGAAGAAAGGAATCATTTTTTT-G 1926
Query 1847 GCCTCTTGTAACTTACTAGCTGTTTGTGAGTCATAATAA 1885
||||||||||| |||||||||||||||||||||||||||
Sbjct 1927 GCCTCTTGTAAGTTACTAGCTGTTTGTGAGTCATAATAA 1965
> AT3G49810.1 | Symbols: | ARM repeat superfamily protein | chr3:18474537-18476834
REVERSE LENGTH=2298
Length=2298
Score = 1072 bits (580), Expect = 0.0
Identities = 1014/1222 (83%), Gaps = 36/1222 (3%)
Strand=Plus/Plus
Query 396 AGAAATTGGATTTGATGAAGATGATTTCTGAGCTGGAATTACCTGAAATACCCTCTGTTT 455
||||||||||| ||| ||||||||| ||||| || |||| || ||||| |||||||
Sbjct 695 AGAAATTGGATCTGAAGAAGATGATAAAGGAGCTAGATTTACAAGATATACCTTCTGTTT 754
Query 456 TCATCTGTCCAATCT-CTCTAGAGCCGATGCAAGATCCAGTGACCTTGTGTACTGGTCAA 514
|||| ||||| |||| || ||||||||||||||||||| ||||| |||||||||||||||
Sbjct 755 TCATTTGTCCTATCTCCT-TAGAGCCGATGCAAGATCCTGTGACTTTGTGTACTGGTCAA 813
Query 515 ACCTACGAGAGGTCT-AACATTCTCAAATGGTTTAATTTAGGGCA-TTGTACATGCCCAA 572
||||| || |||| | ||||||| |||||||||||| |||| || ||| || || || |
Sbjct 814 ACCTATGAAAGGT-TAAACATTCACAAATGGTTTAACCTAGGTCACTTG-ACTTGTCCTA 871
Query 573 CGACGATGCAAGAGCTTTGGGATGATTTGGTCACTCCTAACAAGACTCTTCACCAATTGA 632
| || ||||||||||||||||||||| ||| |||||||| || |||||||| || ||||
Sbjct 872 CTACAATGCAAGAGCTTTGGGATGATACGGTAACTCCTAATAAAACTCTTCATCATTTGA 931
Query 633 TCTACACTTGGTTTTCACAAAAGTATGTTTTGATGAAGAAACGATCTGAAGATGTGCAAG 692
|||| |||||||| || || |||||||| |||||||||||||| ||||| ||||| ||||
Sbjct 932 TCTATACTTGGTTCTCTCAGAAGTATGTGTTGATGAAGAAACGTTCTGAGGATGTTCAAG 991
Query 693 GAAGAGCTATTGAGATATTGGGTACATTG-AGAAAGGCTAAAGGGAAAGCAAAGGTTCAT 751
|| ||||||||||||| ||||| || ||| ||||| |||||||| |||| | |||||||
Sbjct 992 GACGAGCTATTGAGATTTTGGGGACTTTGAAGAAA-GCTAAAGGTCAAGCTAGGGTTCAT 1050
Query 752 GCTTTAAGCGAGCTTAAGCAAG-TTGTGATGGCTCACAC-TATTGCTAAGAAGACTGTTG 809
||||| || |||||||| | || |||| || ||||| | ||| || | |||||||||||
Sbjct 1051 GCTTTGAGTGAGCTTAAAC-AGATTGTTATTGCTCA-TCTTATGGCGAGGAAGACTGTTG 1108
Query 810 TTGATGAAGGTGGAGTCTTTGTGATCTCTTCTCTTTTAAGTCCTTTTACTTCTCATGCTG 869
|||| |||||||| |||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1109 TTGAAGAAGGTGGTGTCTCTGTGATCTCTTCTCTTTTGGGTCCTTTTACTTCTCATGCTG 1168
Query 870 TTGGATCTGAGGCTATCGCGATTCTTGTTAATCTTGAGCTTGATTCTGATTCCAAAGCTG 929
|||||||||||| | | || |||||||| | |||||| |||||||||||||| ||| | |
Sbjct 1169 TTGGATCTGAGGTTGTTGCTATTCTTGTGAGTCTTGATCTTGATTCTGATTCGAAATCCG 1228
Query 930 GATTGATGCAACCAGCTAGAG-TTTCGTTGATGGTTGATATGTTGAATGATGGTTCGATT 988
| |||||||||||||||| || |||| ||||| |||||||||||||||||||| || | |
Sbjct 1229 GCTTGATGCAACCAGCTA-AGGTTTCTTTGATTGTTGATATGTTGAATGATGGATCTAAT 1287
Query 989 GAAACTAAAATCAATTGTGCTAGATTGAT-AGGTAGG-TTGGTGGAGGAGAAAGGTTTTA 1046
|| ||||| |||||||||||||||||||| || ||| |||||||| |||||||| ||||
Sbjct 1288 GAGACTAAGATCAATTGTGCTAGATTGATTAG--AGGATTGGTGGAAGAGAAAGGGTTTA 1345
Query 1047 GAGCAGAGCTTGTTTCTAGTCATAGTTTGCTTGTTGGATTAATGAGATTGGTTAAAGATA 1106
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1346 GAGCAGAGCTTGTTTCAAGTCATAGTTTGCTTGTTGGGTTAATGAGATTGGTTAAGGATA 1405
Query 1107 GGAGACGA-AGAAACGGAGTTTCCCCTGCG-TTAACG-TTGCTCAAATCGGTTTCTGTTC 1163
||||| | ||||| ||||| || ||||| || || ||||| ||| || |||| ||||
Sbjct 1406 AGAGAC-ATAGAAATGGAGTATCTCCTGCACTT--CGGTTGCTTAAACCGATTTCGGTTC 1462
Query 1164 ATAAGCAAGTTAGAAACTTGTTGGTTAGGATTGGAGCAGTTCCTCAATTGGTTGATGTTT 1223
|||| |||||| ||| |||| ||||||| ||||||||||| |||||||| |||||| | |
Sbjct 1463 ATAAACAAGTTCGAAGCTTGATGGTTAGCATTGGAGCAGTGCCTCAATTAGTTGATATCT 1522
Query 1224 TGCCATGTTTAGATCCAGAGTGTTTGGAATCAGCTCTATTCGTG-TTGGATTCGTTGTGT 1282
| || | |||||| || || |||||||| | |||||| || || ||| || | ||||||
Sbjct 1523 TACCGTCTTTAGACCCGGAATGTTTGGAGTTAGCTCTGTTTGTTCTTG-ATGCTTTGTGT 1581
Query 1283 TTAGAAAGCG-AAGGGAGAATCGCTTTGAAAGATTCGGTAAACACGATTCCGCATACCGT 1341
||| | | |||| ||| | ||| | ||||| || | |||||| || || |||| ||
Sbjct 1582 ACAGAC-GTGGAAGGAAGAGTTGCTGTCAAAGACTCTGCAAACACAATACCTTATACAGT 1640
Query 1342 TAGGTTACTGATGAAGGTATCTGAGAAATGCACAAACTATGCGATATCAATACTCTGGTC 1401
|||| | ||||||| ||| |||||||| ||||| ||||| ||| | || || || |||||
Sbjct 1641 TAGGGTGCTGATGAGGGTGTCTGAGAATTGCACTAACTACGCGCTGTCGATTCTTTGGTC 1700
Query 1402 AGTTTGCAAATTAGCTTCTGAAGAATGTTCATCTCTTGCTGTTGAAGTTGGT-TTGGCTG 1460
|| |||||||||||| | |||||||||||| | ||||||||||| |||||| ||| |||
Sbjct 1701 TGTCTGCAAATTAGCTCCAGAAGAATGTTCACCACTTGCTGTTGAGGTTGGTCTTG-CTG 1759
Query 1461 CAAAGCT-TCTGCTTGTGATCCAAAGTGGATGCGACCCAGCTTTGAAGCAACGTTCGGCT 1519
||||||| | | || |||||||| || || || || |||| |||||||| || || ||
Sbjct 1760 CAAAGCTGT-TACTCGTGATCCAGAGCGGGTGTGATGCAGCGTTGAAGCAGCGGTCAGCA 1818
Query 1520 GAGCTA-TTGAAG-TTATGTAGTCTACATTATTCAGACTCAATGTTTATCTCCAAATGTA 1577
|||||| || ||| || ||||||||||||||||||||| | |||||||| |||||||| |
Sbjct 1819 GAGCTACTT-AAGCTT-TGTAGTCTACATTATTCAGACACCATGTTTATTTCCAAATGCA 1876
Query 1578 AACTCACAAGAACAATCCAATA 1599
|||||||||| |||||||||||
Sbjct 1877 AACTCACAAGGACAATCCAATA 1898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93322813155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5