BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496834
Length=1736
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67610.2 | Symbols: | Uncharacterized conserved protein (DU... 2409 0.0
> AT5G67610.2 | Symbols: | Uncharacterized conserved protein (DUF2215)
| chr5:26960931-26963638 REVERSE LENGTH=1814
Length=1814
Score = 2409 bits (1304), Expect = 0.0
Identities = 1532/1639 (93%), Gaps = 28/1639 (2%)
Strand=Plus/Plus
Query 116 GTTGTGGGAGAAA-CTGGAGAGCTTCAAGTGACTCCTAATTTAGAGGTTAAGGGTTCTCC 174
||||||||||||| | |||||||||||||||||||||| ||||||||| || ||||||||
Sbjct 166 GTTGTGGGAGAAAGC-GGAGAGCTTCAAGTGACTCCTAGTTTAGAGGTAAAAGGTTCTCC 224
Query 175 TGGATTGAAGCCAGATAGAACAGT-TCTTTGTGAGAGGATTCATATCCATGGACTTCGAA 233
||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||
Sbjct 225 TGGATTGAAGCCAGATAGAAC-CTCTCTTTGTGAGAGGATTCATATCCATGGACTTGGAA 283
Query 234 GGTTTAAGCATATAGACAAGTATGCACATTCACTCAAGTTGGTAGTTAACGCGTCAACCG 293
||||||| ||| ||||||||||||||||||| ||||||||| ||||||||||||||| |
Sbjct 284 GGTTTAAACATCTAGACAAGTATGCACATTCGCTCAAGTTGATAGTTAACGCGTCAATC- 342
Query 294 T-TGGGAAAACAAGCAGCATTGACGTTTGCTTCCACCGGAATTTGTCGCGTGCAATTGGA 352
| ||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 343 TCTGGGAAAACAAATAACATTGACGTTTGCTTTCACCGGAATTTGTCGCGTGGAATTGGA 402
Query 353 ATGTGCCCTCATAGTCGGTGGGAGAAAGCCTCTAAGGGTTCATGGGTTCAGACAATGTCA 412
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 403 ATGTGCCCTCATAGTCGATGGGAGAAAGCCTCTAAAGGTTCATGGGTTCAGACAATGTCA 462
Query 413 CCCTTCGACCACAAAATCCTTGATGTTAGAGTAGCTAGCTCTAACAAGGTCACTTTGGAA 472
||||||||||| ||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 463 CCCTTCGACCATAAAATCCTTGATGTTAGAGTACCTAGCTCTAACAAGGTCTCATTGGAA 522
Query 473 ATGTCTGCTGTAGAAGAATTATTTATGTATCGCATAGTATTCTTAATCCTTGGTGCTGTA 532
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 523 GTGTCTGCTGTAGAAGAATTATTTATGCATCGCATAGTATTCTTACTCCTTGGTGCTGTA 582
Query 533 TTACTGGCTTCGGCTTCTACACTGAGCCAATCTTTAGCGTTTTACTACAGTAGTGCCATG 592
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 583 TTACTGGCTTCGGCTTCTACACTGAGCCAATCTTTAGCGTTTTACTACAGTAGTGCAATG 642
Query 593 GCTGTTGGTATTATCCTTGTCGTGCTGCTTGTTCTCTTTCAGGGAATGAAGCTTCTACCA 652
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 GCTGTTGGTATTATCCTTGTCGTGCTGCTTGTTCTCTTTCAGGGAATGAAGCTTCTACCT 702
Query 653 ACTGGACGGAGTTCATTTGCATTGTTCATTTACTCATCCCTGCTTGGTTTGGGTGGTTTT 712
|||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 703 ACTGGACGGAGTTCGTTTGCATTGTTCATATACTCAACCCTGCTTGGTTTGGGTGGTTTT 762
Query 713 CTTCTTCGCTACATACCTGGATTGTTTCAAAGTCTGCTAACAGAGATGGGAATCGACGAA 772
|||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 763 CTTCTTCGCTACTTACCCGGATTGTTTGAAAGTCTGCTAACAGAGATGGGAATCGACGAA 822
Query 773 GAAATGTACACACCTGTATCGATTTTTGTGGGGGCGTTTCTATCTTTGGGTGGAGCATTT 832
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 823 GAAATGTACACACCTGCGGCGATTTTTGTGGGGGCGTTTCTGTCTTTGGGTGGAGCATTT 882
Query 833 TTCGGATTTTGGACCGTAAGGAAACTTATTCTGACGGAAGATGGCTCCATTGACGTTAGC 892
|| ||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 883 TTTGGATTTTGGACTGTGAGGAAACTTATTCTGACGGAAGATGGCTCCATTGATGTTAGC 942
Query 893 ACATCACTATTTGTTTCTTGGTCCATCCGAATTATGGCTGCTGTTTTGATCCTTCAGAGC 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 ACATCACTATTTGTTTCTTGGTCCATCCGAATTATGGCTGCTGTTTTGATCCTTCAGAGC 1002
Query 953 TCCGTTGATCCGCTGCTTGCTGGAGGAGCCCTGATATCTGTAATTCTTATGTCATCGACT 1012
|| || ||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 TCTGTAGATCCTTTACTTGCTGGAGGAGCCCTGATATCTGTAATTCTTATGTCATCGACT 1062
Query 1013 TTAAAGAAGATAACCAGACTGAAGTTCCTTCTACTTTTATACGAGATTCCATTGAATTTA 1072
||||||||||| |||||| ||||||||||||||| |||| |||||||||||||||||||
Sbjct 1063 TTAAAGAAGATCACCAGATTGAAGTTCCTTCTACGCTTATTCGAGATTCCATTGAATTTA 1122
Query 1073 CTGCTAGGAATCTGGGAGGCAATTCGTGATGCTGATATACCATCCGTCCCAGGATATCTC 1132
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1123 CTGCTAGGAATCTGGGAGGCAATTCGTGATACTGATATACCATCCGTCCCGGGATATCTC 1182
Query 1133 CATGACTTTATGCGAAAGAGTCCTGATGCCTCTCAATTTCGCAACCGTGTTACTTTTGCT 1192
||||||||||||| ||||||||||||||| ||| ||||||||||||||| |||| ||||
Sbjct 1183 CATGACTTTATGCAAAAGAGTCCTGATGCTTCTGGATTTCGCAACCGTGTAACTTCTGCT 1242
Query 1193 TCTCCATCAGGAGGAATCAACAACGGGATGCGAGAATCTTCACCGTCTGAATCAGATACA 1252
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1243 TCTCCATCAGGAGGAATCAACAACGGGATGCGAGAATCTCCACCGTCTGAATCAGATACA 1302
Query 1253 TTTCCTTCCTCTTTCCATAAAACTCCTGAAAGGAGCCAACTAACAAAAGAAGAATGGAAA 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 TTTCCTTCCTCTTTCCATAAAACTCCTGAAAGGAGCCAACTAACAAAAGAAGAATGGAAA 1362
Query 1313 AAGCTCACTAAGGATAGCACAACAAAGGCCGTTCAAGAATTGGTTTCTTCACCCGATTTT 1372
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1363 AAGCTCACTAAGGATAGCACGACAAAGGCTGTTCAAGAATTGGTTTCTTCACCCGATTTT 1422
Query 1373 GGAAAATGGGCAGCAGTAAATGCCGATAGGATCAGTGTAACACCAAGAAAAGGGTCTTCT 1432
|| |||||||||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct 1423 GGCAAATGGGCAGCAGTTAATGCGGATAGGATCAATGTAACACCAAGAAAAGGATCTTCT 1482
Query 1433 AGCACAAACC-GACCACGGAAATGGCTGCGTTGGTTCTGA------A-CCAAGCCAGTTT 1484
|||| ||||| | |||||||||||| |||||||||||||| | ||||||| ||||
Sbjct 1483 AGCAAAAACCAG-CCACGGAAATGGATGCGTTGGTTCTGATTTCTGAACCAAGCCGGTTT 1541
Query 1485 TAAGTTTCATACCGTTTAGAGAGAAAATGAACTCTTTTGTAGAAAGAGAGAGAGCTCGT- 1543
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 1542 -AAGTTTCATAACGTTTAGAGAGAAAAGGAACTCTTTTGTAGAAAGAGAGAGAGC-CTTT 1599
Query 1544 GTAGGTAAAGTTGCTTTCTTCTTTTATGACTTGGTT-AGTGTTTTAGCTTTCTTTTTTGT 1602
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1600 GTAGGTAAAGTTGCTTTCTTCTTTTATGACTTG-TTCAGTGTTTTAGCTTTTTTTTTTGT 1658
Query 1603 TGATGAGACCACGATTTGTTGTAACGATCCTAATTGG-TTTTTAGGTTGTGTCATGTTTG 1661
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1659 GGATGAGACCACGATTTGTTGTAACGATCCTAATTGGGTTTTTAGGTTGCGTCATGTTTG 1718
Query 1662 TGTGTAGACAAAAATGCAATGAGCCTTCttttt--tt--ATGGTCTTTAATGGGTTCTAC 1717
||||||||||| |||||||||| |||||||| || ||| |||| ||||||||| ||
Sbjct 1719 TGTGTAGACAA---TGCAATGAGCATTCTTTTTCCTTTTATGATCTTGAATGGGTTCAAC 1775
Query 1718 TTTTCATGGTGATGTGAAT 1736
|||||||||||||||||||
Sbjct 1776 TTTTCATGGTGATGTGAAT 1794
Score = 167 bits (90), Expect = 4e-40
Identities = 106/114 (93%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 1 GAAGAAATCGATGGGTGATTATCGTCTTCTCCGAAACTCCGGCGTCGTTGTCGGAATCAT 60
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 15 GAAGAAATCGATGGGTGATTATCGTCTTCTACGAAACTCCGGCGTCGTTATCGGAATAAT 74
Query 61 CTTGCTACATCTCTTTGCTTTCGCTTCTCTTGTATCATCCAATGAACTCCAGTT 114
|||||||||||||||| ||||||| |||||||| |||||| ||||||| |||||
Sbjct 75 CTTGCTACATCTCTTTACTTTCGCCTCTCTTGTTTCATCCGATGAACTTCAGTT 128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85842931950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5