BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496835
Length=442
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67600.1 | Symbols: | unknown protein; LOCATED IN: plasma m... 571 2e-162
> AT5G67600.1 | Symbols: | unknown protein; LOCATED IN: plasma
membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING:
13 growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G49845.1); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26959569-26960323
REVERSE LENGTH=531
Length=531
Score = 571 bits (309), Expect = 2e-162
Identities = 416/462 (90%), Gaps = 30/462 (6%)
Strand=Plus/Plus
Query 1 ACCGGCATAGCTTCGCTATAAAGGAAAGAAACAGAGTTTGC--TTAAACAAAGAGATAAA 58
||||||||||||||| |||||||||||| |||||||||||| ||||||||||||| |||
Sbjct 1 ACCGGCATAGCTTCGTTATAAAGGAAAGGAACAGAGTTTGCTTTTAAACAAAGAGAGAAA 60
Query 59 GaaaaaaaaactcaaagaactcaaaagaagaggaaagaagaaagaTGTATCATCAAGAAC 118
||||||||| |||||||||||| || | | | ||||||||||||||||||||||||||
Sbjct 61 GAAAAAAAAGCTCAAAGAACTC---AG-A-A-G-AAGAAGAAAGATGTATCATCAAGAAC 113
Query 119 AACATCCTGTCGGTGCTCCTCCTCCCCAAGGGTATCCACCTAAGGACGGTTATCCTCCGG 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 AACATCCTGTCGGTGCTCCTCCTCCCCAAGGGTATCCACCTAAGGACGGTTATCCTCCGG 173
Query 179 CCGGTTATCCT----CC-G-------CCG---GGATACGCTCAGGGATACCCTGCTCAAG 223
||||||||||| || | ||| ||||| ||||||||||||||||| ||||
Sbjct 174 CCGGTTATCCTCCAGCCGGTTATCCACCGCCAGGATATGCTCAGGGATACCCTGCACAAG 233
Query 224 GTTATCCTCCGCCGCAATACTCTCAAGCTCCGCAGCAGAAGCAAAACGCCGGTATGCTTG 283
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 GTTATCCTCCGCCGCAGTACTCTCAAGCTCCGCAGCAGAAGCAAAACGCCGGTATGCTTG 293
Query 284 AAGGATGTTTGGCTGCGCTCTGTTGTTGCTGTCTCTTGGATGCATGTTTCTGATGGGAGG 343
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 294 AAGGATGTTTGGCTGCGCTCTGTTGTTGCTGTCTCTTGGATGCATGTTTCTGATCGGAGG 353
Query 344 ATGATGATACGTTGTTGCCTCAGTCAACGATTCTATTTC---ATATATGTAATGTAATGT 400
|| || ||| ||||||||||||||| || |||||| |||||||| |||||||||
Sbjct 354 ATAATTATATAC-GTTGCCTCAGTCAACT-TT-TATTTCCTCATATATGTTATGTAATGT 410
Query 401 TCAACAATCTCTCTTCTGTTGTTATCTTCTTTCAATTCGAAT 442
|||||||||| |||||||||||||||||||||||||||||||
Sbjct 411 TCAACAATCTTTCTTCTGTTGTTATCTTCTTTCAATTCGAAT 452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21011919082
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5