BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496840
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67560.1 | Symbols: ATARLA1D, ARLA1D | ADP-ribosylation fact... 1483 0.0
AT3G49870.1 | Symbols: ATARLA1C, ARLA1C | ADP-ribosylation fact... 693 0.0
> AT5G67560.1 | Symbols: ATARLA1D, ARLA1D | ADP-ribosylation factor-like
A1D | chr5:26950309-26952211 FORWARD LENGTH=1123
Length=1123
Score = 1483 bits (803), Expect = 0.0
Identities = 944/1009 (94%), Gaps = 21/1009 (2%)
Strand=Plus/Plus
Query 1 ATATCAGCAGCGGAAGAAGGATTGAAAAAAGGAAGCTTTCCCtttttttAAGCCCATTAG 60
||||||||||||||| ||||||||| |||||||| ||||||||||| |||||| | ||
Sbjct 123 ATATCAGCAGCGGAACAAGGATTGAGAAAAGGAACCTTTCCCTTTTAATAAGCCGA-TAT 181
Query 61 AGATCCGTGGAGGAGAATTTCTAGCAGACCGA------TC---TGTCTCTGTTTCTACGA 111
|||||| ||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 182 AGATCCTTGGAGGAGAATTTGTAGCAGACCGATCTCTGTCTGTTGTCTCTGTTTCTACGA 241
Query 112 ATCTCTCTGTTTGTCTGAAATCATAAATCATGGGTTTGTGGGATGCTCTTCTCAATTGGC 171
|||||| |||||||| |||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 242 ATCTCTGTGTTTGTCGGAAATCGTAAATTATGGGTTTGTGGGATGCTCTTCTCAATTGGC 301
Query 172 TTCGCAGCCTCTTCTTCAAGCAAGAAATGGAGCTTTCATTGATAGGACTTCAAAATGCAG 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TTCGCAGCCTCTTCTTCAAGCAAGAAATGGAGCTTTCATTGATAGGACTTCAAAATGCAG 361
Query 232 GAAAGACATCACTTGTTAACGTTGTTGCAACCGGTGGATACAGTGAAGACATGATCCCTA 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GAAAGACATCACTTGTTAACGTTGTTGCAACCGGTGGATACAGTGAAGACATGATCCCTA 421
Query 292 CGGTCGGATTCAACATGAGGAAAGTGACAAAAGGAAGTGTCACAATCAAGCTTTGGGATC 351
|||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 422 CGGTTGGTTTCAACATGAGGAAAGTGACAAAAGGAAGTGTCACGATCAAGCTTTGGGATC 481
Query 352 TCGGGGGTCAACCTAGGTTCCGCAGCATGTGGGAACGTTACTGCCGTTCTGTTTCCGCGA 411
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TCGGTGGTCAACCTAGGTTCCGCAGCATGTGGGAACGTTACTGCCGTTCTGTTTCCGCGA 541
Query 412 TTGTGTATGTAGTTGATGCTGCTGATCCTGACAACCTCAGTGTCTCGAAGAGCGAACTCC 471
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 542 TTGTGTATGTAGTTGATGCTGCTGATCCTGATAACCTCAGTGTCTCGAAGAGTGAACTCC 601
Query 472 ATGATTTGTTGAGCAAGACGTCCCTTAGTGGTATCCCTCTTCTAGTCCTTGGCAACAAAA 531
|||||||||||||||||||||| |||| |||||||||||| ||||||||||| |||||||
Sbjct 602 ATGATTTGTTGAGCAAGACGTCGCTTAATGGTATCCCTCTCCTAGTCCTTGGGAACAAAA 661
Query 532 TCGACAAGCCTGGAGCTTTGTCCAAAGAAGCTCTAACTGAGGAAATGGGACTCAAGTCAC 591
||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||
Sbjct 662 TCGACAAGCCTGGAGCTTTGTCCAAAGAAGCCCTAACCGATGAAATGGGTCTCAAGTCAC 721
Query 592 TTACAGATAGAGAAGTCTGTTGCTTCATGATATCTTGCAAGAACTCCACTAACATCGATC 651
| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 722 TGACAGATAGAGAAGTCTGTTGCTTCATGATATCTTGCAAGAACTCTACCAACATCGATC 781
Query 652 AAGTCATTGATTGGCTTGTAAAGCACTCCAAATCATCGAGCTAAACTTTGCACCAAACGA 711
||||||||||||||||||||||||||||||||||||||| |||||||| | ||||| |
Sbjct 782 AAGTCATTGATTGGCTTGTAAAGCACTCCAAATCATCGAATTAAACTTTACCCCAAAAGG 841
Query 712 ACAGAAGTCAACTCTCTGCAGTTCTC-AGTCTT-CTTGTGTTTTTGGTCCTTTGATGATG 769
| ||||||||||||||||||||| || | |||| ||||||||||||||| ||||||||||
Sbjct 842 AGAGAAGTCAACTCTCTGCAGTTGTCGA-TCTTTCTTGTGTTTTTGGTCATTTGATGATG 900
Query 770 ATGATGGTGATTGTGATGGTGGAAGAAGACACAGCTTTCT-CTTTTATCCTGTGAAAAAC 828
||||||||||||||| | |||||||||||||||| | |||||||||||||||||||
Sbjct 901 ATGATGGTGATTGTG--G----AAGAAGACACAGCTTTTTTCTTTTATCCTGTGAAAAAC 954
Query 829 AAGATTTGTCTATGTTTTCTATCTGATTCTTTATC-GTCTTTCTTCTGCGTATGTTGCTG 887
|||||||||||||||| ||| |||||||||||||| ||||||||||||||||||| ||||
Sbjct 955 AAGATTTGTCTATGTTCTCTGTCTGATTCTTTATCTGTCTTTCTTCTGCGTATGTGGCTG 1014
Query 888 TGTTCTCTGTATATTAGATTTGATTGGTGTTCCCTCTTCTTAAAGCCATGATGAGATCAC 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TGTTCTCTGTATATTAGATTTGATTGGTGTTCCCTCTTCTTAAAGCCATGATGAGATCAC 1074
Query 948 TTCCTTCGGGGTCAGCTTTTTCAATTTTACCAGTTCATTGCATGTTTTG 996
|||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1075 TTCCTTCGGGGTCAGCTTTTTCAATTTTACGAGTTCATTGCATGTTTTG 1123
> AT3G49870.1 | Symbols: ATARLA1C, ARLA1C | ADP-ribosylation factor-like
A1C | chr3:18492408-18494139 REVERSE LENGTH=939
Length=939
Score = 693 bits (375), Expect = 0.0
Identities = 497/556 (89%), Gaps = 7/556 (1%)
Strand=Plus/Plus
Query 131 ATCATAAATC-ATGGGTTTGTGGGATGCTCTTCTCAATTGGCTTCGCAGCCTCTTCTTCA 189
||||| ||| |||||||||| ||| ||| |||||||||||||||| |||||||||||||
Sbjct 109 ATCAT-CATCAATGGGTTTGTTGGAAGCTTTTCTCAATTGGCTTCGTAGCCTCTTCTTCA 167
Query 190 AGCAAGAAATGGAGCTTTCATTGATAGGACTTCAAAATGCAGGAAAGACATCACTTGTTA 249
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 168 AGCAAGAAATGGAGCTTTCTTTGATAGGACTTCAAAATGCAGGAAAGACATCACTTGTAA 227
Query 250 ACGTTGTTGCAACCGGTGGATACAGTGAAGACATGATCCCTACGGTCGGATTCAACATGA 309
| ||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 228 ATGTTGTTGCAACTGGTGGATACAGTGAAGACATGATTCCTACGGTCGGGTTTAACATGA 287
Query 310 GGAAAGTGACAAAAGGAAGTGTCACAATCAAGCTTTGGGATCTCGGGGGTCAACCTAGGT 369
||||||| |||||||||| ||| |||||||| || |||||||| || |||||||| || |
Sbjct 288 GGAAAGTAACAAAAGGAAATGTTACAATCAAACTATGGGATCTTGGTGGTCAACCAAGAT 347
Query 370 TCCGCAGCATGTGGGAACGTTACTGCCGTTCTGTTTCCGCGATTGTGTATGTAGTTGATG 429
||||||||||||||||||||||||| || ||||||| || |||||||||||||||||||
Sbjct 348 TCCGCAGCATGTGGGAACGTTACTGTCGCGCTGTTTCTGCCATTGTGTATGTAGTTGATG 407
Query 430 CTGCTGATCCTGACAACCTCAGTGTCTCGAAGAGCGAACTCCATGATTTGTTGAGCAAGA 489
|||| |||||||||||||| ||||| ||||| || |||||||||||||||||||||||||
Sbjct 408 CTGCAGATCCTGACAACCTAAGTGTGTCGAAAAGTGAACTCCATGATTTGTTGAGCAAGA 467
Query 490 CGTCCCTTAGTGGTATCCCTCTTCTAGTCCTTGGCAACAAAATCGACAAGCCTGGAGCTT 549
| || |||| ||||||||||||||| || ||||| ||||| || ||||| |||||||||
Sbjct 468 CTTCGCTTAATGGTATCCCTCTTCTCGTTCTTGGGAACAAGATTGACAAACCTGGAGCTC 527
Query 550 TGTCCAAAGAAGCTCT-AACTGAGGAAATGGGACTCA-AGTCACTTACAGATAGAGAAGT 607
||||||||||||| || ||| || ||||||||||| | | ||||||||||||||||||||
Sbjct 528 TGTCCAAAGAAGC-CTTAACAGACGAAATGGGACTTACA-TCACTTACAGATAGAGAAGT 585
Query 608 CTGTTGCTTCATGATATCTTGCAAGAACTCCACTAACATCGATCAAGTCATTGATTGGCT 667
||| || ||||||||||| ||||||||||| || ||||| ||||||||||||||||||||
Sbjct 586 CTGCTGTTTCATGATATCATGCAAGAACTCTACCAACATTGATCAAGTCATTGATTGGCT 645
Query 668 TGTAAAGCACTCCAAA 683
|||||||| || |||
Sbjct 646 CGTAAAGCATTC-AAA 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48777356737
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5