BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496841
Length=1724
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67550.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2473 0.0
> AT5G67550.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: flower;
EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G71110.1); Has 161 Blast
hits to 154 proteins in 16 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr5:26946754-26949161
REVERSE LENGTH=1733
Length=1733
Score = 2473 bits (1339), Expect = 0.0
Identities = 1602/1727 (93%), Gaps = 26/1727 (2%)
Strand=Plus/Plus
Query 3 CAATAAACAAGGAACATGATTTTCGATCATCAACTTCTTCAACATGACAAAATCAAGAAT 62
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 7 CAATAAACAAGGAACATGATTTTCGATCATCAACTTGTTCAACATGACAAAATCAAGAAT 66
Query 63 AACCGGAGTTCTGTCTCAGCTCCTTTTAACGGCTGTGATCTCTCCAATGTTGGCGGTTTC 122
|||||||| |||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 67 AACCGGAGCTCTGTCTCAGCTTCTTTTAACGGCTGTGATCTCTCCGATTTTGGCGGTTTC 126
Query 123 AAGTTTATCATACGGTGGAGATCATGAGATGTTTATTAAGAGACGCGATCCTCTCAACAG 182
|||||||||| |||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 127 AAGTTTATCAGACGGTGGAGATCATGAGA-G-GT-TTAAGAGACGCGATCCTCTCAACAG 183
Query 183 CTTTAGATATTACGACGAAGGTTTTGATGTTCGAAACAAACATTATTGGGCAGCTACTGC 242
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 184 CTTTAGATATTACGACGGAGGTTTCAATGTTCGAAACAAACATTATTGGGCAGCTACTGC 243
Query 243 ATTTACGGGAATCCACGGTTACGCAGTCGCCGGAGTGTTGATTATTGTCGGCGTATGTGT 302
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 244 ATTTACGGGAATCCACGGTTACGCCGTCGCCGGAGTGTTGATTATTGTCGGTATATGTTT 303
Query 303 GGGACTGTACGTAGCTTTCTCCAAGAAAAGGAGACGCGTTTCTTCCACGT-GCCGCCGTT 361
|||||| |||||||| |||||| | ||||| ||||| ||||||||||| | |||| || |
Sbjct 304 GGGACTTTACGTAGCATTCTCCGACAAAAGAAGACGTGTTTCTTCCAC-TCGCCGACGAT 362
Query 362 ATCTCAACCGTTATTATCTTCCTCTGTTCTTACTTCTCCTCCTCTTCATGTTTCTCTCCA 421
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 363 ATCTCGACCGTTATTATCTTCCTCTGTTCTTACTTCTCCTCCTTTTCATGTTTCTCTCTG 422
Query 422 TGGCAACGACAGGGATAGTGATATCAGCGAACGAGAGGTCGAAGAACAGAACAGAGGAAA 481
||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
Sbjct 423 TGGTAACGACAGGGATAGTGATAGCAGCGAACCAGAGGTCGAAGAACAGAACAGAGGAGA 482
Query 482 TGAAAGAAACCATAGACAAAGCAGGAGAAGATGTTGATCATAACATCCGCACGGTGATAG 541
|||||||||| |||||||||||||||||||||||| |||| ||||| || || |||||||
Sbjct 483 TGAAAGAAACGATAGACAAAGCAGGAGAAGATGTTAATCAAAACATTCGTACAGTGATAG 542
Query 542 TGTCGTTAACGAAGATACAGTACTTGTTGCTTCCATACGATCAGAATACGACTCATCTTC 601
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 543 TGTCGTTAACGAAGATACAGTACTTGTTGCTTCCATACGATCAGAACACGACTCATCTTC 602
Query 602 TCAACGTCACTACCCATCGACTAGGAAAAGGATCTCGCCTTATTCAATCCTTCCTTCATC 661
|||||||||| || |||||||| || ||||| ||||||||||| ||| |||||||||||
Sbjct 603 TCAACGTCACCACTCATCGACTCGGCAAAGGTTCTCGCCTTATCCAAAGCTTCCTTCATC 662
Query 662 ACAACGGTCGTTCCATTGATCTAGCTATCAAAATCTCGTATGTCTCTCATCTTATGATTG 721
| || ||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 663 ATAAGGGTCGTTCCATTGATCTCGCCATCAAAATCTCGTATGTATCTCATCTTATGATTA 722
Query 722 CATCGACCAACTTGTTCCTTCTGCTTCTAGCCTTTGTACCTCTATTGCTTCACTGGCACC 781
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 723 CATCGACCAACTTGTTCCTTCTGCTTCTAGCCTTTTTACCTCTATTGCTTCACTGGCACC 782
Query 782 CTGGATTCATCATGGTGATATTCTTGTGTTGGATCATAGCAACTCTTTGTTGGGTTCTAA 841
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 783 CTGGATTCATCATGGTGATATTCTTGTGTTGGATCATAACAACTCTTTGTTGGGTTCTAA 842
Query 842 CTGGATTCGATTTCTTTATTCACACCTTCGCAGAAGACCTTTGTTCAGCTTTCAAAGGTT 901
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 843 CTGGATTCGATTTCTTTATACACACCTTCGCAGAAGACCTTTGTTCAGCTTTCAATGGTT 902
Query 902 TCGTACAAAACCCACAAAACAGCACACTGACTAATCTTTTCCCTTGTATGGATCCTCTTC 961
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 903 TCGTACAAAACCCACGAAATAGCACACTGACTAATCTTTTCCCTTGTATGGATCCTCTTC 962
Query 962 ATTCTGATAAAACCCTAATCGAGATAAGCTTGATGATTCATAACTTCATCACCGAGTTAA 1021
||||||||||||||||||||||||||||| |||||||||||||||| || ||| ||||||
Sbjct 963 ATTCTGATAAAACCCTAATCGAGATAAGCCTGATGATTCATAACTTTATTACCCAGTTAA 1022
Query 1022 ACTCAAAAGTAGCAGAGTCAATGCGTTCTAATGCGTTGGCTGATCGGAGCAATACTGTCT 1081
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1023 ACTCAAAAGTAGCAGAGTCAATGCGTTCTAATGCGTTGACTGATCGGAGCAATACTGTCT 1082
Query 1082 CGTGGGCGCCTGAATCTGGAATCATATGCGATCCGTTTGGCGGACAACAAATTAACAGTT 1141
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
Sbjct 1083 CGTGGGCGCCTGAATCTGGAATCATATGCGATCCGTTTGTCGGACAACAGATTAACAGCT 1142
Query 1142 ACAAACCACAAAGCTGCTCCAATGGCGCCATTCCAATCGGCGAATTCCCAAATATTCTTT 1201
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1143 ACACACCACAAAGCTGCTCCAATGGCGCCATTCCAATCGGCGAATTCCCAAATATCCTTT 1202
Query 1202 CGAGATTCACATGCCACGACAAAGATCCCCCGGAAACTTGCAGAATCACCGGAAAATTCA 1261
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1203 CGAGATTCACATGCCACGACAAAGATCCACCGGAAACTTGCAGAATCACCGGAAAATTCA 1262
Query 1262 TCCCGGAAGCAGCTTACCTAAAGGTATATGCTTACAGCAACTCAGCACAAGGCATGCTCG 1321
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1263 TCCCGGAAGCAGCTTACCTAAAGGTCTATGCTTACAGCAACTCAGCACAAGGCATGCTAG 1322
Query 1322 ACATCTTACCTTCTCTTCAAAACCTAACAGAATGCCTAGCCGTGAAAGACACGTTATCGA 1381
|||| || |||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1323 ACATTTTGCCTTCTTTTCAAAACCTAACAGAATGCCTTGCCGTGAAAGACACGTTATCGA 1382
Query 1382 GCATAGTCTCTAACCAATGTGAACCCTTTAAAGCATCGATGTATTGCCTTTGGGCATCAA 1441
|||| ||||||||||||||||| ||||||| || ||||||||| ||||||||||||| |
Sbjct 1383 GCATCGTCTCTAACCAATGTGATCCCTTTAGGGCTTCGATGTATCGCCTTTGGGCATCGA 1442
Query 1442 TTCTTGCTCTGTCACTTATCATGGTGGTTCTAGTTTTGCTCCTCTTCGCCAAAGCTTTCC 1501
| ||||||||||| ||||||||||||||||||||||||||| || |||| ||||||||||
Sbjct 1443 TCCTTGCTCTGTCTCTTATCATGGTGGTTCTAGTTTTGCTCTTCCTCGCTAAAGCTTTCC 1502
Query 1502 AGGAAAAAGGAAAGAGTTTTGCTTGGTTTTCGATTCATCCAACTTCTTCCGCAGAAATAC 1561
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1503 AGGAGAAAGGAAAGAGTTTTGCTTGGTTTTCTATTCATCCAACTTCTTCTGCAGAAATAC 1562
Query 1562 GACAAGTGAATATATAGTGGTTAGT--GTGCatatatatatatatataCACTATTATACT 1619
||||||||||||||||||||||||| ||| |||||||||| ||||| | || | |
Sbjct 1563 GACAAGTGAATATATAGTGGTTAGTAAGTG--TATATATATAC-TATACTGT-TT-T--T 1615
Query 1620 TGAttttttttGGTATCTACATTTTTaaaaaa-aTTATCATTGAAAGATATATAGAGAGT 1678
| || || || || | |||||| ||||||| || ||||||||||||| ||||||
Sbjct 1616 TAATAGTTATT--TA-C-ACATTTATAAAAAATAT-ATCATTGAAAGATG----GAGAGT 1666
Query 1679 GTAT-AAGAAGTGTAAATATGACATTGTATCAAACATTTGTAATAAG 1724
| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1667 G-ATTAAGAAATGTAAATATGACATTGTATCAAACATTTGTAATAAG 1712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85240525410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5