BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496842
Length=1962
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67530.1 | Symbols: ATPUB49, PUB49 | plant U-box 49 | chr5:2... 3134 0.0
> AT5G67530.1 | Symbols: ATPUB49, PUB49 | plant U-box 49 | chr5:26941182-26944146
FORWARD LENGTH=2134
Length=2134
Score = 3134 bits (1697), Expect = 0.0
Identities = 1850/1926 (96%), Gaps = 2/1926 (0%)
Strand=Plus/Plus
Query 1 GAAGAAGTAAACAATGGGGAAGAAACAACACAGCAAAGATCGGATGTTCATAACGAAGAC 60
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 GAAGAAGTGAACGATGGGGAAGAAACAACACAGCAAAGATCGGATGTTCATAACGAAGAC 125
Query 61 GGAGTGGGCAACAGAATGGGGAGGCGCTAAATCCAAAGAGAATCGTACTCCTTTCAAGAG 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 126 GGAGTGGGCAACAGAATGGGGAGGCGCTAAATCCAAAGAGAATCGAACTCCTTTCAAGAG 185
Query 121 TCTTCCTTACTATTGCTGCGCGCTTACGTTTTTGCCATTCGAAGATCCTGTGTGTACAAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 TCTTCCTTACTATTGCTGCGCGCTTACGTTTTTGCCATTCGAAGATCCTGTGTGTACAAT 245
Query 181 CGACGGGAGTGTTTTCGAGATAACAACTATAGTGCCTTACATTCGGAAATTTGGGAAGCA 240
||||||||||||||||||||||||||| ||||||||||||||| |||||||||| || ||
Sbjct 246 CGACGGGAGTGTTTTCGAGATAACAACAATAGTGCCTTACATTAGGAAATTTGGAAAACA 305
Query 241 TCCAGTTACAGGAGCTCCATTGAAAGGAGAAGATCTAATTCCTCTCATCTTTCACAAGAA 300
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TCCTGTTACTGGAGCTCCATTGAAAGGAGAAGATCTAATTCCTCTCATCTTTCACAAGAA 365
Query 301 CTCTGAAGGAGAGTATCATTGTCCTGTTCTAAACAAAGTCTTTACTGAATTTACACATAT 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 366 CTCTGAAGGAGAGTATCATTGTCCTGTTCTAAACAAAGTCTTCACTGAATTTACACATAT 425
Query 361 AGTTGCTGTCAAGACTACCGGAAATGTATTCTGCTACGAGGCAATCAAAGAGTTAAATAT 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 426 TGTTGCTGTCAAGACTACTGGAAATGTATTCTGCTACGAGGCAATCAAAGAGTTGAATAT 485
Query 421 CAAAACCAAGAATTGGAAGGAGCTTTTAACAGAAGAACCATTCACAAGAGCCGACCTTAT 480
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 486 CAAAACCAAGAATTGGAAGGAGCTTTTAACTGAAGAACCATTTACAAGAGCCGACCTTAT 545
Query 481 AACAATTCAGAATCCTAATGCAGTTGACAGTAAAGTGACGGTGGAGTTTGATCATGTTAA 540
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 546 AACAATTCAGAATCCTAATGCAGTTGATGGTAAAGTGACGGTGGAGTTTGATCATGTTAA 605
Query 541 AAATGGCCTTAAGATCGATGATGAAGAGTTGAAAAAGATGAACTCAGACCCAGCTTATAA 600
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 606 AAACGGTCTTAAGATCGATGATGAAGAGTTGAAAAAGATGAACTCAGACCCTGCTTATAA 665
Query 601 TATAAACGTGTCTGGAGATATCAAGCAGATGCTTGCGGATCTTGGAACCGAAAAAGCTAA 660
||||||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||
Sbjct 666 TATAAACGTGTCTGGAGATATCAAGCACATGCTTGCAGATCTTGGAACTGATAAAGCTAA 725
Query 661 AGAGATTGCTTTACATGGTGGAGGTGGAAACAAGGCACGTAATGAAAGGGCCGCTGCTAT 720
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 726 AGAGATTGCTTTACATGGTGGAGGTGGAAACAAGGCACGTAATGAAAGAGCCGCTGCTAT 785
Query 721 TGCTGCGATTCTAGAGTCTAGATCGAAAATCAAAGAGGATTCTAAAGCAGAACAACCGAA 780
|||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 786 TGCTGCGATTCTGGAGTCAAGATCGAAAATCAAAGAGGTTTCTAAAGCAGAACAACCGAA 845
Query 781 GCAGACCTACAGTGTTGTGGATGCTGCATCTGCTTCGGTTTTTGGAAGAAGTGCTGATGC 840
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 846 ACAGACCTACAGTGTTGTTGATGCTGCATCTGCTTCGGTTTTTGGAAGAAGTGCTGATGC 905
Query 841 AGCTAAAGCTGGTTCTAGTGATAAAACAGCTGCAAGAATAGCTATGCATATGGCTGGAGA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 AGCTAAAGCTGGTTCTAGTGATAAAACAGCTGCAAGAATAGCTATGCATATGGCTGGAGA 965
Query 901 TAGAGCACCTGTTAATTCTAAAATGGTGAAGAGCCGTTATTCGTCGGGTGCTGCTTCTCG 960
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 TAGAACACCTGTTAATTCTAAAATGGTGAAGAGCCGTTATTCGTCGGGTGCTGCTTCTCG 1025
Query 961 TTCTTTCACTTCCACTGCATTTACTCCTGTAACTGAAAACGATTTTGAACTAATTAAAGT 1020
||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1026 TTCTTTCACTTCCTCTGCCTTTACTCCTGTAACCAAAAACGATTTTGAACTAATTAAAGT 1085
Query 1021 CGAGAAAAACCCAAAAAAGAAAGGGTATGTTCAGTTTCAGACAACACATGGTGATTTGAA 1080
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1086 CGAGAAAAACCCGAAAAAGAAAGGGTATGTTCAGTTTCAGACAACACATGGCGATTTGAA 1145
Query 1081 CATAGAGCTCCATTGCGATATAGCTCCTAGAGCATGTGAGAATTTCATCACTCTTTGCGA 1140
||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1146 CATTGAGCTCCATTGCGATATAGCTCCTAGAGCATGTGAGAATTTCATCACTCTCTGTGA 1205
Query 1141 ACGTGGTTACTACAATGGAGTGCCCTTTCACAGAAGCATCAGGAACTTCATGATTCAAGG 1200
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1206 ACGTGGTTACTACAATGGAGTGGCCTTTCACAGAAGTATCAGGAACTTCATGATTCAAGG 1265
Query 1201 TGGCGATCCAACTGGGACAGGAAAAGGAGGTGAATCCATCTGGGGGAAGCCATTCAAAGA 1260
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1266 GGGCGATCCAACTGGCACAGGAAAAGGAGGTGAATCCATTTGGGGGAAGCCATTCAAAGA 1325
Query 1261 CGAGCCGAACTCGAAGCTACTTCACTCGGGAAGAGGCGTAGTTAGTATGGCTAATAGTGG 1320
|||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1326 CGAGCCAAACTCGAAGCTGCTTCACTCAGGAAGAGGCGTAGTTAGTATGGCTAATAGTGG 1385
Query 1321 TCCTCACACAAATGGTTCTCAGTTTTTCATCTTATACAAATCTGCAACCCATTTAAACTA 1380
||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||
Sbjct 1386 ACCTCACACAAATGGTTCTCAGTTTTTCGTCTTATACAAATCAGCGACCCATTTAAACTA 1445
Query 1381 CAAGCACACAGTGTTTGGTGGAGTTGTTGGAGGTTTGGCAACACTAGCAGCAATGGAGAA 1440
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1446 CAAGCACACAGTGTTTGGTGGAGTTGTTGGTGGTTTGGCAACACTAGCAGCAATGGAGAA 1505
Query 1441 TGTACCTGTAGATGAAAGCGACCGTCCTCTGGAAGAGATTAAGATAATCGAGGCAAATGT 1500
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1506 TGTACCTGTAGATGAAAGCGACCGTCCTCTTGAAGAGATTAAGATAATCGAGGCAAGTGT 1565
Query 1501 GTTTGTGAATCCATACACGGAGCCTGAtgaagaggaagaaaaagagaaagctgagaaaga 1560
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1566 GTTTGTGAATCCATACACGGAGCTTGATGAAGAGGAAGAGAAAGAGAAAGCTGAGAAAGA 1625
Query 1561 gaggaatgaagacaaagacattgagaagGTCGGGTCGTGGTACAGCAACCCGGGATCAGG 1620
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1626 GAAGAATGAAGACAAAGACATTGAGAAGATCGGGTCGTGGTACAGCAACCCGGGATCAGG 1685
Query 1621 AACAGCTGAAGGTGGAGCCGGTGGCGGTGGTGTCGGAAAATACTTGAAAGCCAAGAGTAG 1680
|||| | |||| |||||| |||||||||||||||||||||||||||||||| | ||||||
Sbjct 1686 AACAACAGAAGCTGGAGCGGGTGGCGGTGGTGTCGGAAAATACTTGAAAGCTATGAGTAG 1745
Query 1681 TACAGCCACTAAAGACACTAATGGTTCCCTAGACTCTGATATTTCAACCATTGGAGT-TA 1739
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 1746 TACAGCCACTAAAGACACTAAAGGTTCCCTAGACTCAGATATTTCAACCATTGGAGTGT- 1804
Query 1740 CTAAGAAAAGAAAAACTACTGCGTCAGCCTCCACAGGGTTTAAAGATTTCTCGAGCTGGT 1799
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1805 CTAAGAAAAGAAAAACTACTGCGTCAGCCTCCACAGGGTTTAAAGATTTCTCTAGCTGGT 1864
Query 1800 AATTGAAAACATTCTCTACCTACTTTGTAAAACTGTTGACTAGTTTTGATAGAGCCCAAG 1859
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1865 AATTGAAAACATTCTCTACCTACTTTGTAAAACCGTTGACTAGTTTTGATAGAGACCAAG 1924
Query 1860 TCACAAAAGCATTTGTATGCCAACATTGAACCTTTGATGTCCAAAAGCTGGAGCTGTGTA 1919
||||||||||||||||||| ||||| ||| |||||||||||||||| |||||||||||||
Sbjct 1925 TCACAAAAGCATTTGTATGACAACACTGAGCCTTTGATGTCCAAAATCTGGAGCTGTGTA 1984
Query 1920 ATAAAG 1925
||||||
Sbjct 1985 ATAAAG 1990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97188255120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5