BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496843
Length=1202
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67520.1 | Symbols: APK4 | adenosine-5'-phosphosulfate (APS)... 1399 0.0
> AT5G67520.1 | Symbols: APK4 | adenosine-5'-phosphosulfate (APS)
kinase 4 | chr5:26939159-26941010 FORWARD LENGTH=1284
Length=1284
Score = 1399 bits (757), Expect = 0.0
Identities = 1073/1213 (88%), Gaps = 72/1213 (6%)
Strand=Plus/Plus
Query 2 ACCGACTTAAAATATAAATTTAAAGATCGTT-AAAAACAAAACTGTACAATTGTTTTCTG 60
||||||||||||||| ||||| ||||||||| |||||| ||||| ||||| ||||| ||
Sbjct 43 ACCGACTTAAAATATTAATTT-AAGATCGTTAAAAAAC-AAACTCTACAA--GTTTT-TG 97
Query 61 A-TTCAGAGTTCACCGTTGAGCGTGTTCAATTAAATCGTTGAATCTCGCGGTGCCATTTT 119
| |||||||| ||||||||||| |||||||||||||||||||||||||||||| | ||||
Sbjct 98 ATTTCAGAGTCCACCGTTGAGCCTGTTCAATTAAATCGTTGAATCTCGCGGTG-CGTTTT 156
Query 120 ACGTTGCTTCTTTCGAATCTTTCTTATATGGATATTGCCGCGGTGGCGAGATGTGTTGGA 179
|| ||| ||||||||||| ||| |||||||||| |||||||| ||||||||||||| |||
Sbjct 157 ACTTTGATTCTTTCGAATTTTTTTTATATGGATGTTGCCGCGATGGCGAGATGTGTGGGA 216
Query 180 AGGTGCTATGTTTCGCCGGCGTTCGGAGAATCCGAA-CCCTTCCGGTTATCGGAGCGGCG 238
|||||||| ||||||||||||||||| || || ||| | | ||||||||||||||||||
Sbjct 217 AGGTGCTACGTTTCGCCGGCGTTCGGTGAGTCTGAATCGC-ACCGGTTATCGGAGCGGCG 275
Query 239 GTTTCTGAAATTTTCTTGCTCCACGAATTCGGATCCCACCGGTAGTAGAAGTTTGATA-T 297
|||||||||||| ||| |||||||||||||||||||| ||||||||| |||||||| |
Sbjct 276 GTTTCTGAAATTGTCTAGCTCCACGAATTCGGATCCCGCCGGTAGTAAAAGTTTGA-AGC 334
Query 298 TTGGCGGGAAAAGTCACCGGAGACTTG-GCTTCTTCCGTCCGATCATGGCGACAGATGAA 356
|| ||||||||| ||| |||||| || ||| |||||||||||||||||| | |||||||
Sbjct 335 TTCGCGGGAAAATTCATCGGAGA-ATGAGCTACTTCCGTCCGATCATGGCAAAAGATGAA 393
Query 357 TCGATTTCATCGCGGTCCTCTGATTGCGCCGGTGAAACAAAGCAAATCAACGGAAAGCAA 416
|| |||||||||| | | | |||||||||| ||||||||||| |||||||||
Sbjct 394 TCCATTTCATCGC-G------G--T---CCGGTGAAACGAAGCAAATCAATGGAAAGCAA 441
Query 417 AAGAACATTGTCTGGCATGATTGTCCCGTTACTCAATCAGACAGGCAAAAATTGATTAAG 476
||||||||||||||||||||||||||||||||| |||| ||||||||| |||| ||||||
Sbjct 442 AAGAACATTGTCTGGCATGATTGTCCCGTTACTAAATCCGACAGGCAAGAATTAATTAAG 501
Query 477 CAAAAGGGATGTGTTATTTGGATTACTGGCTTAAGTGGTTCAGGTAAAAGTAGTCTGGCA 536
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 CAAAAGGGATGTGTGATTTGGATTACTGGCTTAAGTGGTTCAGGTAAAAGTAGTCTGGCA 561
Query 537 TGTGCTCTTAGTCGAGCTTTGCACAGTCGTGGAAAGATTTCGTATATACTTGATGGGGAC 596
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||
Sbjct 562 TGTGCTCTTAGTCGAGCTTTGCACAATCGTGGAAAGCTTTCGTATATACTTGATGGTGAC 621
Query 597 AATGTTCGACATGGTTTAAACAGCGATCTTAGTTTCGAAGCAGAAGATCGAGCTGAAAAT 656
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 622 AATGTTCGACATGGTTTAAACAGCGATCTTAGTTTCGAAGCAGATGATCGAGCTGAAAAC 681
Query 657 ATTAGAAGAGTTGGTGAAGTGGCTAAACTGTTTGCAGATGCTGGTATAATCTGTATTGCA 716
||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 682 ATTCGAAGAGTTGGTGAAGTGGCTAAACTGTTTGCAGATTCTGGTATTATCTGTATTGCA 741
Query 717 AGTTTGATATCTCCTTACCGCAGAGAACGAGCTGCTTGCCGTGCATTGCTACC-CGAAGG 775
||||| |||||||||||||| | |||||||||||| ||||||||||| |||| | ||||
Sbjct 742 AGTTTAATATCTCCTTACCGGATAGAACGAGCTGCCTGCCGTGCATTATTACCAC-AAGG 800
Query 776 AGATTTCATTGAGGTATTTATGGATGTGCCACTCCATGTTTGTGAAGCTAGAGATCCAAA 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 AGATTTCATTGAGGTATTTATGGATGTGCCACTCCATGTTTGTGAAGCTAGAGATCCAAA 860
Query 836 GGGCTTATACAAACGTGCACGTGCTGGGAAAATCAAAGGTTTTACAGGAGTAGATGATCC 895
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 861 GGGCTTATACAAACGTGCACGCGCTGGTAAAATCAAAGGTTTTACAGGAGTAGATGATCC 920
Query 896 ATATGAACCGCCTTTGGATTGCGAGATTGTGATACAAAACAACAGAGACAAGGG--t--c 951
||||||| |||||||||||||||||||||| |||||||||| ||||||||||| | |
Sbjct 921 ATATGAAGCGCCTTTGGATTGCGAGATTGTAATACAAAACAGTAGAGACAAGGGGCTTTC 980
Query 952 tt-t-c-t-t-c-t-t-catcttc-c-t-c-t-t-c-t-t-ct-ct--GTGTGAAATGGC 991
|| | | | | | | | ||||||| | | | | | | | | || || ||||||||||||
Sbjct 981 TTCTTCATCTTCATCTTCATCTTCACCTTCATCTTCGTCTTCTTCTCTGTGTGAAATGGC 1040
Query 992 AGAGATTGTTGTATCGTACTTGGACCAAAATGGATACCTCCAGACGCCTTAGAAACACTC 1051
||| |||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 1041 AGATATTGTTGTGTCGTACTTGGACCAAAATGGATACCT---GA------AGAAACACTC 1091
Query 1052 CACAAAATCACATAATTGTATACTTTCCTTGTGAATGTGATACTAAAATCATTGTTGTAA 1111
||||||||||| ||||||||| || ||||| ||| ||| |||||||||||||
Sbjct 1092 CACAAAATCACGTAATTGTAT---------GTAAATGTAATATTAATATCATTGTTGTAA 1142
Query 1112 CGTTTCTTAAACCTATTTTACCTTTGGATGATTAAATTGTGAAAACATCAATGTA-T-CA 1169
||||||||||||||||||||||| |||| ||||||||||||||||||| |||||| | ||
Sbjct 1143 CGTTTCTTAAACCTATTTTACCTATGGACGATTAAATTGTGAAAACATAAATGTAATTCA 1202
Query 1170 CAATCTGCAAAGA 1182
|||||||||||||
Sbjct 1203 CAATCTGCAAAGA 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59035840920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5