BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496844
Length=618
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67510.1 | Symbols: | Translation protein SH3-like family p... 929 0.0
> AT5G67510.1 | Symbols: | Translation protein SH3-like family
protein | chr5:26937813-26938451 REVERSE LENGTH=639
Length=639
Score = 929 bits (503), Expect = 0.0
Identities = 582/619 (94%), Gaps = 9/619 (1%)
Strand=Plus/Plus
Query 1 ATTTTTTCACAAATTCGGCGGCGATGAAGTACAATCCGCGTGTGACCTCTTCTCGCCGGA 60
|||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 19 ATTTCTTCACAAATTCAGCGGCGATGAAGTTCAATCCGCGTGTGAGCTCTTCTCGCCGGA 78
Query 61 AGAACAGGAAGGCTCACTTTACAGCTCCTTCAAGCGTGAGGCGCGTTCTCATGAGCTCGC 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 79 AGAACAGGAAGGCTCACTTCACAGCTCCTTCAAGCGTGAGGCGCGTTCTCATGAGCTCGC 138
Query 121 CGTTATCCAAAGATCTCCGTCAA-AAATACAACGTCAGATCCATGCCGATTCGTAAAGAC 179
|||||||||| ||||||||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 139 CGTTATCCAAGGATCTCCGT-AACAAACACAACGTCAGATCCATGCCGATTCGTAAAGAC 197
Query 180 GACGAAGTGCAAGTTGTTCGTGGGACGTTCAAGGGAAGAGAAGGGAAGGTGATGCAGGTG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 GACGAAGTGCAAGTTGTTCGTGGGACGTTCAAGGGAAGAGAAGGGAAGGTGATGCAGGTG 257
Query 240 TACCGACGCAAGTGGGTGATTCACATCGAGAGAATCACAAGGGAGAAAGTCAACGGAACG 299
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 258 TATCGCCGCAAGTGGGTGATTCACATCGAGAGAATCACAAGGGAGAAAGTCAACGGATCC 317
Query 300 ACGGTCAACGTCGGAATCCAGGCTTCGAATGTGATGATCACCAAGCTCCGTCTCGATAAG 359
||||||||||||||| || | |||||||||||||||||||| ||||||||||||||||||
Sbjct 318 ACGGTCAACGTCGGAGTCAATGCTTCGAATGTGATGATCACTAAGCTCCGTCTCGATAAG 377
Query 360 GATAGGAAGTCGCTTTTGGAGCGTAAGGCTAATGGACGCGCCGCCGCGGATAAGGAGAAG 419
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 378 GATAGGAAGTCGCTTTTGGAGCGTAAGGCTAATGGACGCGCCGCCGCCGATAAGGAGAAG 437
Query 420 GGAACCAAGTTTTCAGCGGCAGATGTTATGGAGAACGTAGATTGAGATTGACGTATTGGt 479
||||||||||||||||| | |||||| |||||||||||||||||| || |||||| |||
Sbjct 438 GGAACCAAGTTTTCAGCCGAAGATGTCATGGAGAACGTAGATTGATCTTAACGTAT-GGT 496
Query 480 tttttttttctttcttt-ctagttttctattttgatttcAAGGATGATGATATGATTCAG 538
||||| || ||| |||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 497 TTTTTCTT-CTT-CTTTTCTAGTTTTCTATTTTGATTTCATTGATGATGATATGATTCAG 554
Query 539 AATTCGAAGTTGAATTTTGTGGTTTTGGTATCAATGTACCATCATTTATGCCTTTATATT 598
|||||||||||||||||||||||||| |||||||||||| |||||||||| || |||||
Sbjct 555 AATTCGAAGTTGAATTTTGTGGTTTTCTTATCAATGTACC-TCATTTATGC-TT-ATATT 611
Query 599 ACTAGCTATTGAAATTGGA 617
||||||||||||||||||
Sbjct 612 TCTAGCTATTGAAATTGGA 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29788849171
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5