BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496845
Length=1075
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67500.2 | Symbols: VDAC2 | voltage dependent anion channel ... 1419 0.0
> AT5G67500.2 | Symbols: VDAC2 | voltage dependent anion channel
2 | chr5:26935143-26937442 FORWARD LENGTH=1311
Length=1311
Score = 1419 bits (768), Expect = 0.0
Identities = 857/899 (95%), Gaps = 10/899 (1%)
Strand=Plus/Plus
Query 178 GGCCCTTACGTCTACTGCTCTGAAGAAAGGAGGAGTTCATGCTGCTGATGTTGCCACCCA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 GGCCCTTACGTCTACTGCTCTGAAGAAAGGAGGAGTTCATGCTGCTGATGTTGCCACCCA 337
Query 238 ATACAAGTACAAGAATGCTTTGTTCGGTGTCAAAATTGACACTGATTCTAGTGTTTTGAC 297
|||||||||||||||||||||||| | ||| ||||| |||||||||||||||||||||||
Sbjct 338 ATACAAGTACAAGAATGCTTTGTTTGATGTTAAAATCGACACTGATTCTAGTGTTTTGAC 397
Query 298 AACAGTCACACTCACCGAGATCCTCCCATCAACAAAAGCCATTGCCTCCTTCAAAGTCCC 357
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 AACAGTCACACTTACCGAGATCCTCCCATCAACAAAAGCCATTGCCTCCTTCAAAGTCCC 457
Query 358 CGATTACAATTCCGCAAAGCTTGAGGTCCAATACTTCCATGACCATGCAACAGTCACCGC 417
||||| |||||||| ||||| ||||| ||||||||||| ||||| |||||||| |||||
Sbjct 458 TGATTATAATTCCGCCAAGCTCGAGGTGCAATACTTCCACGACCACGCAACAGTTACCGC 517
Query 418 TGCTGCAGCTTTGAAACAAAACCCGCTAATTGACATAACAGCTACTCTTGGTTCGCCAGT 477
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 518 TGCTGCAGCTTTGAAACAAAACCCACTAATTGACATAACAGCTACTCTTGGTTCGCCAGT 577
Query 478 CATCTCATTTGGTGCTGAAGCTGGATATGACACAACCTCCAAAACTTTCACCAAGTACAA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 CATCTCATTTGGTGCTGAAGCTGGATATGACACAACCTCCAAAACTTTCACCAAGTACAA 637
Query 538 TGCCGGGATCAGTGTGACAAAACCTGACGCTTGCCTTTCCATAATATTGGGAGACAAAGG 597
|||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 638 TGCCGGGATCAGTGTGACAAAACCAGATGCTTGCCTCTCCATAATATTGGGAGACAAAGG 697
Query 598 AGACTCACTCAAAGCATCTTACCTTCATCACTTTGATGAATTTAAGAGAACCGCAGCAGT 657
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 698 AGACTCACTCAAAGCATCATACCTTCATCACTTTGATGAATTTAAGAGAACCGCAGCAGT 757
Query 658 TGGTGAGGTTTACAGGAAATTCTCGACAAATGAAAACACGATAACGGTTGGTGGATTGTA 717
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 758 TGGTGAGGTTTACAGGAAGTTCTCGACAAATGAAAACACGATAACGGTTGGTGGATTGTA 817
Query 718 TGCGATTGATCATTCGACTTCAGTGAAAGCTAAGCTGAACAACCATGGCACACTTGGTGC 777
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 818 TGCGATTGATCATTCGACTGCAGTGAAAGCTAAGCTCAACAACCATGGCACACTTGGTGC 877
Query 778 TCTTCTCCAGCACGAGGTCCTGCCCAGATCACTAGTGACTGTTTCCAGTGAGATTGACAC 837
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 TCTTCTGCAGCACGAGGTCCTGCCCAGATCACTAGTGACTGTTTCCAGTGAGATTGACAC 937
Query 838 CAAGGCTTTAGAAAAGCATCCAAGGTTTGGTCTCTCTCTTGCTCTCAAACCTTGAGAaca 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 TAAGGCTTTAGAAAAGCATCCAAGGTTTGGTCTCTCTCTTGCTCTCAAACCTTGAGAACA 997
Query 898 cacacacacacacTCACATCAGACCTGCTTGAGTCTTCCTTCTTTTCTCGTATGCTCTCA 957
||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 998 CACAC--------TCACATCAGACCTGCTTGAGTCTTCCTACTTTTCTCGTATGCTCTCA 1049
Query 958 TTGTTGATTTCTTCTACGGCTGGACCCGAGAGTTTGCGttttttccc-cctttttttCTT 1016
||||||||||| |||||||| |||| ||||||| ||||||||| || |||||||| |||
Sbjct 1050 TTGTTGATTTCCTCTACGGCAGGACGTGAGAGTTAGCGTTTTTTTCCTCCTTTTTTCCTT 1109
Query 1017 CACGTTTAGTTGGAATCAATAAATAGTTCCGCAGTGAAATTGACGGATAATTCTTTTTT 1075
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 -ACGTTTAATTGGAATCAATAAATAGTTCCGCAGTGAAATTGACGGATAATTCTTTTTT 1167
Score = 316 bits (171), Expect = 2e-85
Identities = 178/181 (98%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 1 GTCGTAATTCTTCTATCTTGATATCTTCACCGCCTGCCGATCTCTC-C-ATCTCCGATCA 58
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 18 GTCGTAATTCTTCTATCTTGATATCTTCACCGCCTGCCGATCTCTCTCAATCTCCGATCA 77
Query 59 ACCATGAGCAAAGGTCCAGGACTCTTCACCGATATCGGCAAGAAAGCCAAAGATCTGTTG 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 ACCATGAGCAAAGGTCCAGGACTCTTCACCGATATCGGCAAGAAAGCCAAAGATCTGTTG 137
Query 119 ACGAGAGACTACAATTCTGATCAGAAGTTCAGTATCTCCACTTACAGTGCCTCCGGCGTG 178
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 ACGAGAGACTACAATTCCGATCAGAAGTTCAGTATCTCCACTTACAGTGCCTCCGGCGTG 197
Query 179 G 179
|
Sbjct 198 G 198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52660371705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5