BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496846
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67480.2 | Symbols: BT4 | BTB and TAZ domain protein 4 | chr... 2025 0.0
> AT5G67480.2 | Symbols: BT4 | BTB and TAZ domain protein 4 | chr5:26930940-26932756
REVERSE LENGTH=1494
Length=1494
Score = 2025 bits (1096), Expect = 0.0
Identities = 1207/1262 (96%), Gaps = 2/1262 (0%)
Strand=Plus/Plus
Query 229 AGGGAAGAGAAGATAAGCTAAACAAGAGAATGGTGACTGGTTGT-TTGGATCTTCATCAA 287
||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||
Sbjct 232 AGGGAAGAGAAGATAAGCTAAACAAGAGAATGGTGACAGGTTGTGTT-GATCTTCATCAA 290
Query 288 TCCTTCAAATCTGCAGATTCATCTTCTGTGCCCATTCCTCCACCTCTTCCATCAAAATCT 347
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 291 TCTTTCAAATCTGCAGATTCATCTTCTGTGCCAATTCCTCCTCCTCTTCCATCAAAATCT 350
Query 348 GATGGACACAAGAAAAGACTCGGGCCTAGCTGCGTTTCGACAGCCACAAGAGATACGTGG 407
||||||| |||||||| ||| |||| |||| |||||||||||||||||||||||| ||||
Sbjct 351 GATGGACTCAAGAAAAAACTTGGGCATAGCAGCGTTTCGACAGCCACAAGAGATATGTGG 410
Query 408 GATCGTCTTTTCAATGATGGATACAAAGCTGATGTAGTGATCTATACAGATAATGGCAGC 467
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 411 GATCGTCTTTTCAATGACGGATACAAAGCTGATGTAGTCATCTATACAGATAATGGCAGT 470
Query 468 ATCATCTATGCTCATGCCAACATCATTGGAACTGCTTCCACTGTGATCAAAGGCATGTTG 527
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 471 ATCATCTATGCTCATGCCAACATCCTTGGAACTGCTTCCACTGTGATCAAAGGCATGTTG 530
Query 528 AAGCAAGCCAAGAGACATGGCAAGTGGCATACAATCTCGATCCGCGGTGTCCCTCACGAT 587
||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| |||
Sbjct 531 AAGCAAGCCAAGAGACATGGCAAGTGGCATACAATATCAATCCGAGGTGTCCCTCATGAT 590
Query 588 GCCGTGCGAGTTTTTATCCGTTTCCTCTACTCTTCTTGCTATGAGAAAGAAGAAATGAAC 647
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 GCTGTGCGAGTTTTTATCCGTTTCCTCTACTCTTCTTGCTATGAGAAAGAAGAAATGAAC 650
Query 648 GAGTTTATCATGCATTTGTTACTTCTGTCGCACGCGTATGTGGTTCCTCAGCTGAAACGG 707
|||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||
Sbjct 651 GAGTTTATCATGCATTTGCTACTTCTGTCACACGCGTACGTGGTTCCTCAGCTGAAACGG 710
Query 708 GTCTGTGAATGGCATCTGGAACATGGTTTGCTTACCACTGAGAATGTGATTGATGTGTTC 767
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 711 GTCTGTGAATGGCATCTAGAACATGGTTTGCTTACCACTGAGAATGTGGTTGATGTGTTC 770
Query 768 CAGCTTGCGCTGCTGTGTGATTTCCCTCGGCTTAGCCTCATATCTCACCGTATGATCATG 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 CAGCTTGCGCTGCTGTGTGATTTCCCTCGGCTTAGCCTCATATCTCACCGTATGATCATG 830
Query 828 AAACACTTTAAGGAGCTTTCTGCGACAGAAGCATGGACAGCTATGAAGAAAAGCCATCCT 887
||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 831 AAACACTTTAACGAACTCTCTGCGACAGAAGCATGGACAGCTATGAAGAAAAGCCATCCC 890
Query 888 TTTCTTGAGAAAGAAGTTAGAGACTCAATGATCATCGAAGCAAATACGCGGAAAGAGAGG 947
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 891 TTTCTTGAGAAAGAAGTTAGAGACTCAGTAATCATCGAAGCAAATACGCGGAAAGAGAGG 950
Query 948 ATCAGAAAACGCAATGATCAGAGGATATATTCGCAGCTATACGAAGCAATGGAAGCTCTT 1007
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 951 ATGAGAAAACGCAATGATCAGAGGATATATTCGCAGCTATACGAAGCAATGGAAGCACTT 1010
Query 1008 GTTCATATATGCAGAGACGGATGTAAAACAATAGGACCACATGATAAAGATTTAAAACCG 1067
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1011 GTTCATATATGCAGAGATGGATGTAAAACAATAGGGCCACACGATAAAGATTTCAAACCG 1070
Query 1068 GACCACGCACCGTGTAACTATGAAGCTTGCAAGGGATTAGAATCACTGATCCGGCATTTC 1127
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 AACCATGCAACGTGTAACTATGAAGCTTGCAAGGGATTAGAATCACTGATCCGGCATTTC 1130
Query 1128 GCAGGCTGTAAGCTTAGAGTTCCAGGAGGTTGCGTGCATTGCAAGAGAATGTGGCAACTC 1187
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 GCAGGCTGTAAGCTAAGAGTTCCAGGAGGTTGCGTGCATTGCAAGAGAATGTGGCAACTC 1190
Query 1188 CTTGAATTGCATTCACGTGTTTGCGCTGATTCTGATCAATGTCGAGTCCCTCTATGCAGA 1247
|||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1191 CTTGAACTGCATTCACGTGTTTGCGCAGGTTCTGATCAATGTCGAGTCCCTCTATGCAGA 1250
Query 1248 AACTTTAAGGAGAAGATGGAGAAACAGAGCAAGAAAGATGAATCGAGATGGAAACTTCTG 1307
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1251 AACCTTAAGGAGAAGATGGAGAAACAGAGCAAGAAAGATGAGTCGAGATGGAAACTTCTG 1310
Query 1308 GTGAAAAATGTACTGGGAAGTAAGAAAGTCGGAGGCTCTCCTTTCTTTTTACCGGTGACA 1367
||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1311 GTGAAGAATGTATTGGGGAGTAAGAAAATCGGAGGCTCTCCTTTCTTTTTACCGGTGACA 1370
Query 1368 AGCTGTTAAAAAACATTTTGTCAATCTCAAGAAGGGCGAGTTTTAAGCGTTTCTTGTGAT 1427
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 AACTGTTAAAAAACATTTTGTCAATCTCAAGAAGGGCGAGTTTTAAGCGTTTCTTGTGAT 1430
Query 1428 CCTATCTTAAAAACAAGTGTAACATAATGAATTTGAATAAATGACACATATTGTGGTCGG 1487
|||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1431 CCTATCTTTAAAACAAGTGTAACATAATGAGTTTGAATAAATGACACATATTTTGGTCGG 1490
Query 1488 CC 1489
||
Sbjct 1491 CC 1492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73443397335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5