BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496849
Length=1538
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67460.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 2049 0.0
AT5G67455.1 | Symbols: | pre-tRNA | chr5:26921672-26921743 FOR... 134 3e-30
AT5G57885.1 | Symbols: | pre-tRNA | chr5:23445994-23446065 FOR... 134 3e-30
AT5G54865.1 | Symbols: | pre-tRNA | chr5:22287626-22287697 REV... 134 3e-30
AT2G23020.1 | Symbols: | pre-tRNA | chr2:9803217-9803288 REVER... 134 3e-30
AT2G23650.1 | Symbols: | pre-tRNA | chr2:10059446-10059517 REV... 134 3e-30
AT1G69000.1 | Symbols: | pre-tRNA | chr1:25941164-25941235 FOR... 134 3e-30
AT5G41675.1 | Symbols: | pre-tRNA | chr5:16667436-16667507 REV... 124 2e-27
AT3G55735.1 | Symbols: | pre-tRNA | chr3:20693686-20693757 FOR... 122 7e-27
AT1G42120.1 | Symbols: | pre-tRNA | chr1:15730615-15730686 REV... 122 7e-27
> AT5G67460.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr5:26921584-26923274 REVERSE LENGTH=1543
Length=1543
Score = 2049 bits (1109), Expect = 0.0
Identities = 1422/1565 (91%), Gaps = 54/1565 (3%)
Strand=Plus/Plus
Query 1 ATGAGACATCTTCTTTACATTTTCTTCTTCATTGCCTTTCTCGGTTTTGCAGGAGCTGGT 60
||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGAGGCATCTTCTTTACATTTTCCTCTTCATTGCCTTTCTCAGTTTTGCAGGAGCTGGT 60
Query 61 CAAGAATCAACACCCATTAG-AGCTCTAAATCTCCATC-ACAATCTCTTTCAACTTCCTC 118
|||||||||||||||||| | ||||||||| || || | |||||||| ||||||||||||
Sbjct 61 CAAGAATCAACACCCATT-GAAGCTCTAAACCT-CAACAACAATCTCCTTCAACTTCCTC 118
Query 119 AAACCACTGATCTTGATCTCGCTGTTTCTGTGAGTGACAACAAAACCATTACTGAGATTT 178
|||||||||||||||||||||||||||| || |||| |||||||||||| ||||||||||
Sbjct 119 AAACCACTGATCTTGATCTCGCTGTTTCAGTAAGTGGCAACAAAACCATCACTGAGATTT 178
Query 179 CCTCAAGTATCATAAAAGCTGAAACTTGGCTTAAAACCCATGTCCTCTCTCGTTACCCTT 238
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 179 CCTCAAGTATCATAAAAGCTGAAACTTGGCTTAAAACCCATATCCTCTCTCGTTACCCTT 238
Query 239 CCACAAAAATCACCACCATTGTTATCTTTTTCCCTGATTCTTGCCAAACCACACAAAACA 298
|||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 239 CCACCAAAATCACCACCATTGTTATATTTTTCCCTGATTCTTGCCAAACCACAC--AAC- 295
Query 299 AACCCACCTCTGATCCGGTTCTT-TCTTCTTTGAAAAACATTTACCATTCTCTTACAAGA 357
| || |||||||| |||| || ||||||||||||||||| ||||||||||| ||||||
Sbjct 296 -A--CAGCTCTGATCTGGTT-TTATCTTCTTTGAAAAACATATACCATTCTCTCACAAGA 351
Query 358 TGGGGTCTTGAGAACAACATCAAAGTCTCCTCTGGCTTCTCTTA-CAATTGCTTAAACAA 416
|||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 352 TGGGGTCTCGAGAACAACATCAAAGTCTCCTCTGGCTTCTCTTACCAA-TGCTTAAACAA 410
Query 417 CCCAAAAATCTCAGAAATGTTCAAACCTGTTCTCATCTTCCTCAAAACCATAAACTCAAC 476
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 CCCAAAAAGCTCAGAAATGTTCAAACCTGTTCTCATCTTCCTCAAAACCATAAACTCAAC 470
Query 477 TTTCACCATAAACCCACCTCAAAACTTCCTTTCTTCACCTGATAATCATCTTGATTTGCT 536
||||||||||||||||||||||||||||||| |||| ||| |||| |||| |||| ||||
Sbjct 471 TTTCACCATAAACCCACCTCAAAACTTCCTTACTTCCCCTCATAACCATCGTGATCTGCT 530
Query 537 TCATTCCGTTGAAAAGTTGGGATCTTTGAGCTTCAACAAAGTCAATTTCTTAAACCCTGA 596
|||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||
Sbjct 531 TCATTCCGTTGAAAAGCTCGGATCTTTAAGCTTCAACAAAGTCAATTTCTTAAACCCTGA 590
Query 597 ACCAGAACAAGAATCTACAACGACGATGACAAGAAGAAATCTGAGATCTTTAATCAATCT 656
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||
Sbjct 591 GCCAGAACAAGAATCTACAACGACGATGACAAGAAGAAATCTAAGATCTTTAGTCAACCT 650
Query 657 CACCAGCAAATTCACAATCTCTTTCCCAACATTACCATCTCCATCACCAGAAAACT-CAC 715
|| |||||||||||||| |||||||||||||||||||||||| |||||||||| || |||
Sbjct 651 CAGCAGCAAATTCACAACCTCTTTCCCAACATTACCATCTCCGTCACCAGAAA-CTTCAC 709
Query 716 CAATTCACTCCTCAATCGGATCTCCATCTCCACCTACTATACCCTATTTCTCAGAACCTT 775
|||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||
Sbjct 710 CAATTCACTCCTCAATTGGATCTCCATCTCCACCTACTATACCCTATTTCCCTGAACCTT 769
Query 776 CACAATCTCCGATGGAATCAAATCAAGGAATCTCTCTTCCGCCGTGCCTTCCTTACCATC 835
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 770 CACAATCTCCGATGGAATCAAATCAAGGGATCTCTCTTCCACCGTGCCTTCCTTATCATC 829
Query 836 CGGCGCCGTCACCGTCA-CCGGTGAAGAAGAAGGACGTGGAAGGGCTATGGTGCGTGGCG 894
| |||||||||||| || ||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 830 CAGCGCCGTCACCG-CAACCGGTAAAGAAGAAGAACGTGGAAGGGCTATGGTGCGTGGCG 888
Query 895 AAACCGAGCGTAGCGGCAGAGACATTGCAGCAATCTCTGGACTTTGCGTGTGGACAAGGA 954
||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 889 AAACCTAGCGTAGCGGCAGAGACATTGCAACAGTCTCTGGACTTTGCGTGTGGACAAGGA 948
Query 955 GGAGCCAATTGCGATGAGATTAAACCTCACGGGATATGTTACTATCCAGACACAGTCATG 1014
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 949 GGAGCCAATTGCGATGAGATTAAACCTCATGGTATATGTTACTATCCAGACACAGTCATG 1008
Query 1015 GCTCACGCATCTTTTGCTTTCAACAGTTATTGGCAAAAGACTAAACGTAACGGAGGTACT 1074
||||| || |||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1009 GCTCATGCCTCTTATGCTTTCAACAGTTATTGGCAAAAGACTAAACGAAACGGAGGTACT 1068
Query 1075 TGCTCTTTCGGTGGAACCGCCATGCTTATCACAACTGACCCAAGTTATCAGCATTGCCGG 1134
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1069 TGCTCTTTCGGTGGAACCGCCATGCTTATCACCACTGACCCGAGTTATCAGCATTGCCGT 1128
Query 1135 TTTGTTCTGAGTT-GAGATATGTCAGCCATTGAAGATCTGGAGTTCTGGACTCTGAGAAA 1193
||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||
Sbjct 1129 TTTGTTCTGAGTTAGAGATTTGTCAGCCATTGAAGATCTGGAG------ACT--GAGAAA 1180
Query 1194 CCCCGGAAACAAAGAAGA-TAGATGATATTAATTAAGTAGTGATCTAT-AGTTTTGTTAA 1251
| ||||| ||||||||| | ||||||||||||| | |||| | || | | | ||||
Sbjct 1181 CAACGGAAGCAAAGAAGAAT-GATGATATTAATTTACTAGTT-TAAATCAATGGT-TTAA 1237
Query 1252 TT-TTTTATCATTTAGGGTTCA-CTT--TTA------A-TT--AATCCGTTCTTTGGCCC 1298
| ||||||||||||||||| | ||| ||| | || ||||||| |||||||||
Sbjct 1238 CTCTTTTATCATTTAGGGTTTAACTTAATTATTGTTTACTTTTAATCCGTCCTTTGGCCC 1297
Query 1299 ACTTGGT-ACTGTTAATGGGCTTTGTTTTACCGAGACCGGAATGGGCCTTATTGTAGGGG 1357
||||| | ||| |||||||||||||||||||||| |||| ||||||||||||| |||
Sbjct 1298 ACTTG-TCACTATTAATGGGCTTTGTTTTACCGAAACCGAAATGGGCCTTATTTTAGCCC 1356
Query 1358 AAACGGaaaaaaaTAATCAAAAACACGTATCAGAGCCAGGTTTCGATCCTGGGACCTGTG 1417
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1357 AAATGGAAAAAAATAATCAAAAACTTATATCAGAGCCAGGTTTCGATCCTGGGACCTGTG 1416
Query 1418 GGTTATGGGCCCACCACGCTTCCGCTGCGCCACTCTGATT-TTGTTGACACGTTT-ATAT 1475
|||||||||||||||||||||||||||||||||||||||| || |||| | |||| ||||
Sbjct 1417 GGTTATGGGCCCACCACGCTTCCGCTGCGCCACTCTGATTGTT-TTGA-ATGTTTTATAT 1474
Query 1476 C-AACGTTTTATATAACCATTAGTTAAACCTTGGCTCGTTTGTTAT-GTTGATGGGCTTT 1533
| || ||||||||||| | ||| |||||||||| ||||||||| | |||||||||||||
Sbjct 1475 CCAA-GTTTTATATAAGCGTTAAATAAACCTTGGGTCGTTTGTTTTTGTTGATGGGCTTT 1533
Query 1534 TGGTC 1538
|||||
Sbjct 1534 TGGTC 1538
> AT5G67455.1 | Symbols: | pre-tRNA | chr5:26921672-26921743 FORWARD
LENGTH=72
Length=72
Score = 134 bits (72), Expect = 3e-30
Identities = 72/72 (100%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 1385 TATCAGAGCCAGGTTTCGATCCTGGGACCTGTGGGTTATGGGCCCACCACGCTTCCGCTG 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 TATCAGAGCCAGGTTTCGATCCTGGGACCTGTGGGTTATGGGCCCACCACGCTTCCGCTG 13
Query 1445 CGCCACTCTGAT 1456
||||||||||||
Sbjct 12 CGCCACTCTGAT 1
> AT5G57885.1 | Symbols: | pre-tRNA | chr5:23445994-23446065 FORWARD
LENGTH=72
Length=72
Score = 134 bits (72), Expect = 3e-30
Identities = 72/72 (100%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 1385 TATCAGAGCCAGGTTTCGATCCTGGGACCTGTGGGTTATGGGCCCACCACGCTTCCGCTG 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 TATCAGAGCCAGGTTTCGATCCTGGGACCTGTGGGTTATGGGCCCACCACGCTTCCGCTG 13
Query 1445 CGCCACTCTGAT 1456
||||||||||||
Sbjct 12 CGCCACTCTGAT 1
> AT5G54865.1 | Symbols: | pre-tRNA | chr5:22287626-22287697 REVERSE
LENGTH=72
Length=72
Score = 134 bits (72), Expect = 3e-30
Identities = 72/72 (100%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 1385 TATCAGAGCCAGGTTTCGATCCTGGGACCTGTGGGTTATGGGCCCACCACGCTTCCGCTG 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 TATCAGAGCCAGGTTTCGATCCTGGGACCTGTGGGTTATGGGCCCACCACGCTTCCGCTG 13
Query 1445 CGCCACTCTGAT 1456
||||||||||||
Sbjct 12 CGCCACTCTGAT 1
> AT2G23020.1 | Symbols: | pre-tRNA | chr2:9803217-9803288 REVERSE
LENGTH=72
Length=72
Score = 134 bits (72), Expect = 3e-30
Identities = 72/72 (100%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 1385 TATCAGAGCCAGGTTTCGATCCTGGGACCTGTGGGTTATGGGCCCACCACGCTTCCGCTG 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 TATCAGAGCCAGGTTTCGATCCTGGGACCTGTGGGTTATGGGCCCACCACGCTTCCGCTG 13
Query 1445 CGCCACTCTGAT 1456
||||||||||||
Sbjct 12 CGCCACTCTGAT 1
> AT2G23650.1 | Symbols: | pre-tRNA | chr2:10059446-10059517 REVERSE
LENGTH=72
Length=72
Score = 134 bits (72), Expect = 3e-30
Identities = 72/72 (100%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 1385 TATCAGAGCCAGGTTTCGATCCTGGGACCTGTGGGTTATGGGCCCACCACGCTTCCGCTG 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 TATCAGAGCCAGGTTTCGATCCTGGGACCTGTGGGTTATGGGCCCACCACGCTTCCGCTG 13
Query 1445 CGCCACTCTGAT 1456
||||||||||||
Sbjct 12 CGCCACTCTGAT 1
> AT1G69000.1 | Symbols: | pre-tRNA | chr1:25941164-25941235 FORWARD
LENGTH=72
Length=72
Score = 134 bits (72), Expect = 3e-30
Identities = 72/72 (100%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 1385 TATCAGAGCCAGGTTTCGATCCTGGGACCTGTGGGTTATGGGCCCACCACGCTTCCGCTG 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 TATCAGAGCCAGGTTTCGATCCTGGGACCTGTGGGTTATGGGCCCACCACGCTTCCGCTG 13
Query 1445 CGCCACTCTGAT 1456
||||||||||||
Sbjct 12 CGCCACTCTGAT 1
> AT5G41675.1 | Symbols: | pre-tRNA | chr5:16667436-16667507 REVERSE
LENGTH=72
Length=72
Score = 124 bits (67), Expect = 2e-27
Identities = 67/67 (100%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 1388 CAGAGCCAGGTTTCGATCCTGGGACCTGTGGGTTATGGGCCCACCACGCTTCCGCTGCGC 1447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 CAGAGCCAGGTTTCGATCCTGGGACCTGTGGGTTATGGGCCCACCACGCTTCCGCTGCGC 10
Query 1448 CACTCTG 1454
|||||||
Sbjct 9 CACTCTG 3
> AT3G55735.1 | Symbols: | pre-tRNA | chr3:20693686-20693757 FORWARD
LENGTH=72
Length=72
Score = 122 bits (66), Expect = 7e-27
Identities = 70/72 (97%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 1385 TATCAGAGCCAGGTTTCGATCCTGGGACCTGTGGGTTATGGGCCCACCACGCTTCCGCTG 1444
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 72 TATCAGAGCCAAGTTTCGATCTTGGGACCTGTGGGTTATGGGCCCACCACGCTTCCGCTG 13
Query 1445 CGCCACTCTGAT 1456
||||||||||||
Sbjct 12 CGCCACTCTGAT 1
> AT1G42120.1 | Symbols: | pre-tRNA | chr1:15730615-15730686 REVERSE
LENGTH=72
Length=72
Score = 122 bits (66), Expect = 7e-27
Identities = 70/72 (97%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 1385 TATCAGAGCCAGGTTTCGATCCTGGGACCTGTGGGTTATGGGCCCACCACGCTTCCGCTG 1444
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 72 TATCAGAGCCAAGTTTCGATCTTGGGACCTGTGGGTTATGGGCCCACCACGCTTCCGCTG 13
Query 1445 CGCCACTCTGAT 1456
||||||||||||
Sbjct 12 CGCCACTCTGAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75903224040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5