BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496850
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67450.1 | Symbols: AZF1, ZF1 | zinc-finger protein 1 | chr5... 1591 0.0
AT3G49930.1 | Symbols: | C2H2 and C2HC zinc fingers superfamil... 176 4e-43
AT3G19580.1 | Symbols: AZF2, ZF2 | zinc-finger protein 2 | chr3... 73.1 5e-12
> AT5G67450.1 | Symbols: AZF1, ZF1 | zinc-finger protein 1 | chr5:26918793-26919949
REVERSE LENGTH=1157
Length=1157
Score = 1591 bits (861), Expect = 0.0
Identities = 1044/1127 (93%), Gaps = 34/1127 (3%)
Strand=Plus/Plus
Query 1 TTCTTCTTCTTAAATA-CATCAAAATCACATCTCA-A-AATTAAAAACCATATGGCTCTT 57
|||||||||||||||| | || ||||||||||||| | |||| ||| | |||||||||
Sbjct 23 TTCTTCTTCTTAAATAGC-TCGAAATCACATCTCACAGAATT--AAATCTTATGGCTCTC 79
Query 58 GAGACTCTCAATTCTCCAACAGCCACCAGCACCGATCGTCCTCTTCTCCGGTATCGTGAA 117
||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||||||
Sbjct 80 GAGACTCTCAATTCTCCAACAGCTACCACCACCGCTCGGCCTCTTCTCCGGTATCGTGAA 139
Query 118 GAAATGGAGCCTGAGAATCTCGAGCAATGGGCTAAAAGAAAACGAACAAAACGTCAACGT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 GAAATGGAGCCTGAGAATCTCGAGCAATGGGCTAAAAGAAAACGAACAAAACGTCAACGT 199
Query 178 TTTGATCACGGTCATCAGAATCAAGAAACGAATAAGAATCACCTTCCTTCTGAAGAAGAG 237
|||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||||
Sbjct 200 TTTGATCACGGTCATCAGAATCAAGAAACGAACAAGAA-C-C-TTCCTTCTGAAGAAGAG 256
Query 238 TATCTCGCTCTTTGTCTCCTCATGCTCGCTCGTGGCTCCGCCGTACAATCTCCTCCTCTT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 TATCTCGCTCTTTGTCTCCTCATGCTCGCTCGTGGCTCCGCCGTACAATCTCCTCCTCTT 316
Query 298 CCTCCTCTACCGTCACGTCCTTCACCGTCCGATCACCGAGATTACAAGTGTTCCGTTTGT 357
|||||||||||||||||| | |||||||||||||||||||||||||||||| | || |||
Sbjct 317 CCTCCTCTACCGTCACGTGCGTCACCGTCCGATCACCGAGATTACAAGTGTACGGTCTGT 376
Query 358 GGAAAATCGTTTTCGTCTTACCAAGCCTTAGGTGGACACAAGACGAGTCACCGGAAACCG 417
|| || || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 GGGAAGTCCTTTTCGTCATACCAAGCCTTAGGTGGACACAAGACGAGTCACCGGAAACCG 436
Query 418 ACGAATAAC-AGTATCACTTCCGGTAACCAAGAACTGTCTAATAACAGTCACAGTAACAG 476
||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 ACGAACA-CTAGTATCACTTCCGGTAACCAAGAACTGTCTAATAACAGTCACAGTAACAG 495
Query 477 CGGTTCCGTTGTTATTAACGTTACCGTTAATACTAGTAACGGTGTTAGTCAAAATGGAAA 536
||||||||||||||||||||||||||| || ||| |||||||||||||||||| |||||
Sbjct 496 CGGTTCCGTTGTTATTAACGTTACCGTGAACACTGGTAACGGTGTTAGTCAAAGCGGAAA 555
Query 537 GATTCACACTTGCTCGATCTGTTTCAAGTCGTTTTCGTCTGGTCAAGCCTTAGGTGGACA 596
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 556 GATTCACACTTGCTCAATCTGTTTCAAGTCGTTTGCGTCTGGTCAAGCCTTAGGTGGACA 615
Query 597 CAAACGGTGTCACTATGACGGTGGCAGTAACGGTAACGGTAACGGAAGTACCAGCAACAG 656
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 616 CAAACGGTGTCACTATGACGGTGGCAACAACGGTAACGGTAACGGAAGTAGCAGCAACAG 675
Query 657 CGTAGAAGTCGTTGCTGGTAGTGACGTCAGCGATGTGGATAACGAGAGATCGTCGGAAGA 716
||||||| |||| ||||||||||||||||||||||| ||||| ||||||| ||| |||||
Sbjct 676 CGTAGAACTCGTCGCTGGTAGTGACGTCAGCGATGTTGATAATGAGAGATGGTCCGAAGA 735
Query 717 AAGTGCTATCGGTGGCCACCGTGGATTTGACCTAAATTTACCGGCTGATCAAGTCTCAGT 776
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 736 AAGTGCGATCGGTGGCCACCGTGGATTTGACCTAAACTTACCGGCTGATCAAGTCTCAGT 795
Query 777 GACGATTTCTTAACGTTGACTCAGTATG-GGAGAAAAGTCAACTA--A-G-G--G----- 824
||||| ||||||||||||||| ||| || ||| |||||||||||| | | | |
Sbjct 796 GACGACTTCTTAACGTTGACTGAGTTTGAGGA-AAAAGTCAACTATCAAGCGAAGAAAGG 854
Query 825 -TTAGTGGACGGTGAAGATTAACGGTCGTTTCTTTCCAGTTGCTTCGGCTTGAGCTTGAC 883
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 855 GTTAGTGGACGGTGAAGATTAACGGTCGTTTCTTTCCAGTTGCTTCGGTTTGAGCTTGAC 914
Query 884 TGAGTCTGTAATGAAAATGATTGGAGTGGACTTG-CATTATTATTAtttttttttGAAAA 942
|| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||
Sbjct 915 TGGGTCTGTAATGAAAATGATTGGAGTGGACTTGGCATTATTATTATTATTTTT--AAAA 972
Query 943 AGGAAATGTTAATTTGTTGTTGGATTTGTTTATAGATTAGAGGAAACAATTGGGATATT- 1001
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 973 AG-AAATGTTAATTTGTTGTTGGATTTGTTTATAGAT-AGAGGAAACAATTGGGATACAC 1030
Query 1002 AAA-AttttttttttATA-AAA-ATAATAATAATGCAGAGATGGATTATTGGATCGTACA 1058
||| ||||||||||| || ||| | ||||||||||||||||||||| |||||||||||||
Sbjct 1031 AAATATTTTTTTTTTTTACAAAGAAAATAATAATGCAGAGATGGATGATTGGATCGTACA 1090
Query 1059 CGTTATTATATAGTGGACCATTCTGTAATCGTGAATTATTATTTTTT 1105
||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1091 CGTTATTATATAGTGGACCATTCTGTAATCGTGAATTATTATTATTT 1137
> AT3G49930.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr3:18510246-18510963 FORWARD LENGTH=718
Length=718
Score = 176 bits (95), Expect = 4e-43
Identities = 170/204 (83%), Gaps = 13/204 (6%)
Strand=Plus/Plus
Query 222 TCCTTCTGAAGAAGAGTATCTCGCTCTTTGTCTCCTCATGCTCGCTCGTGGCTCCGCCG- 280
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||
Sbjct 159 TCCTTCTGAAGAAGAGTATCTCGCTCTTTGCCTCCTTATGCTCGCTCGTGGCTCCTCCGA 218
Query 281 T-A-CAATCTCCTCC-TCTTCCTCCTCTACCGTCACGTCCTTCACCGTCCGATCACC-GA 336
| | || ||||| || || || || || || | | || ||| ||||||||| | ||
Sbjct 219 TCATCACTCTCCACCGTCGGA-TCATC-AC--TCTCTTTCTCCACTGTCCGATCATCAGA 274
Query 337 --GATTACAAGTGTTCCGTTTGTGGAAAATCGTTTTC-GTCTTACCAAGCCTTAGGTGGA 393
||||||||||||||||| ||||| ||||| ||| | |||||||||||| |||||||||
Sbjct 275 AAGATTACAAGTGTTCCGTCTGTGGCAAATC-TTTCCCGTCTTACCAAGCGTTAGGTGGA 333
Query 394 CACAAGACGAGTCACCGGAAACCG 417
||||| || |||||||||||||||
Sbjct 334 CACAAAACAAGTCACCGGAAACCG 357
Score = 56.5 bits (30), Expect = 5e-07
Identities = 35/37 (95%), Gaps = 2/37 (5%)
Strand=Plus/Plus
Query 742 TTTGACCTAAATTTACCGGCTGATCAAGTCTCAGTGA 778
||||||||||||||||||||||||||||| | |||||
Sbjct 559 TTTGACCTAAATTTACCGGCTGATCAAGT-T-AGTGA 593
> AT3G19580.1 | Symbols: AZF2, ZF2 | zinc-finger protein 2 | chr3:6803166-6804233
REVERSE LENGTH=1068
Length=1068
Score = 73.1 bits (39), Expect = 5e-12
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 229 GAAGAAGAGTATCTCGCTCTTTGTCTCCTCATGCTCGCT 267
|||||||||||||||||||||||||||||||||||||||
Sbjct 318 GAAGAAGAGTATCTCGCTCTTTGTCTCCTCATGCTCGCT 356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54166388055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5