BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496854
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67420.1 | Symbols: LBD37, ASL39 | LOB domain-containing pro... 1275 0.0
AT4G37540.1 | Symbols: LBD39 | LOB domain-containing protein 39... 268 7e-71
> AT5G67420.1 | Symbols: LBD37, ASL39 | LOB domain-containing protein
37 | chr5:26904289-26906026 REVERSE LENGTH=1651
Length=1651
Score = 1275 bits (690), Expect = 0.0
Identities = 1126/1314 (86%), Gaps = 120/1314 (9%)
Strand=Plus/Plus
Query 108 aaTTTGTGCAAGATTCTTCTACGGCGTCGAGCGTCACGCACCAATACGCTTCC-TTTTCG 166
|||| ||| | ||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 248 AATTGGTGTATGATTCTTCTACGGCGGCGAGCCTCACGCACCAATACGCTTCCTTTTTCT 307
Query 167 ATATGTCTCTT-A--A--TTATT-TT--TAT-TATTCCT-------A-T-AAAAATATTC 208
|||||||||| | | ||||| || ||| | || | | | ||||||||||
Sbjct 308 CTATGTCTCTTCATTATTTTATTATTCCTATATTTTTTTAAAAAAAACTCAAAAATATTC 367
Query 209 CAATTTGGA-TTT--TA-ATAC--A-AA----TGT-AATA-ATGTGTATATATATATGTG 255
||||||||| ||| || |||| | || ||| ||| || | ||||||||||||||
Sbjct 368 CAATTTGGATTTTAATATATACTAATAATGTGTGTGTATATATATATATATATATATGTG 427
Query 256 GTCTTCTCTATCTTCTTCATAAAACA-TTTAAtctctctctatctctctttttt-tCTGT 313
||||| |||| ||||||||||||| ||||| ||||||| ||||| |||||| |||||
Sbjct 428 GTCTTGTCTA---TCTTCATAAAACATTTTAA--TCTCTCT-TCTCTTTTTTTTGTCTGT 481
Query 314 GCAAAGATATCA-AATCTTCTTCTTTCTTCTCCCAGACATCAGCAACATTCAGGAG---- 368
|||||||||||| |||||||| |||||||||||||||||||||| |||||||||
Sbjct 482 GCAAAGATATCACTTTCTTCTTC-TTCTTCTCCCAGACATCAGCAAGATTCAGGAGATTA 540
Query 369 --A----GAA--AAAAC--T------T--AAA--CACCAGAGGACATAACTT-AAATTTG 407
| || ||||| | | ||| |||| ||||| ||||||| ||| |||
Sbjct 541 AAACCTTAAATTAAAACAATACAAACTCCAAATTCACCGGAGGAAATAACTTAAAACTTG 600
Query 408 ATTCTGAAATAAAAAATGAGCTGCAATGGTTGCCGTGTTCTCCGGAAAGGTTGCAGCGAG 467
| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATCTG----AAAAGATGAGCTGCAATGGTTGCCGTGTTCTCCGGAAAGGTTGCAGCGAG 656
Query 468 AATTGTATCCTCCGGCCATGTATTCAATGGATTGAAACCGCCGATGCTCAAGGTCACGCC 527
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 657 AATTGTATCCTCCGGCCATGTATTCAATGGATTGAAACCGCCGATGCTCAAGGCCACGCC 716
Query 528 ACCGTCTTCGTCGCTAAATTCTTCGGCCGTGCTGGTCTCATGTCCTTTATCTCCGCCGTA 587
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 717 ACCGTCTTCGTCGCTAAATTCTTCGGCCGTGCTGGTCTCATGTCCTTTATCTCCGCTGTT 776
Query 588 CCGGAATCTCAACGTCCTGCTTTGTTTCAGTCTTTGCTCTACGAAGCTTGTGGAAGAACT 647
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 777 CCGGATTCTCAACGTCCTGCTTTGTTTCAGTCGTTGCTCTACGAAGCTTGTGGAAGAACT 836
Query 648 GTGAATCCAGTAAACGGAGCAATCGGAATGTTATGGACTGGAAATTGGAATATCTGTCAA 707
|| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 837 GTCAATCCAGTTAACGGAGCAATCGGAATGTTATGGACTGGAAACTGGAATATCTGTCAA 896
Query 708 GCGGCTGTTGAAACCGTGCTTCGCGGCGGTTCTTTAAGACCGATCCCTGAGCTT------ 761
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 897 GCGGCTGTTGAAACAGTGCTTCGCGGCGGTTCTTTAAGACCGATCCCGGAGCTTCTCACT 956
Query 762 ---GGCGGCGGATTCGCTGGTTTTCCTTCGCCTACATCTGAAGAAGCATCTGAGATCTGT 818
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 957 CACGGCGGCGGTTTCGCTGGCTTTCCTTCGCCTACATCTGAAGAAGCATCTGAGATCTGC 1016
Query 819 ACTGAAATGTTGAATCTTCAGCAAAATGATTCTACCGATCGTAACATCTACCATCATTCT 878
|| |||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1017 ACCGAAATGTTGAATCTCCAGCAAAATGATTCCACCGATCGTAACATCTATCATCATTCA 1076
Query 879 CGATTTTCAAGCTCTAGATCTAGATCTACGATGGACTCTTCTTCTCCTACGAAACGTAAG 938
||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 1077 CGATTCTCAAGCTCTAGATCTAGATCTACTATGGATTCTTCTTCTCCGACGAAACGTAAG 1136
Query 939 CGATTAGCATTAGAACAACAACCATCTTCCGAGCTTGATCTATCTCTGATCCCTAATTTT 998
||||| ||| ||| | ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1137 AGATTATCATCGGAAGACCAACCATCTTCGGAGCTTGATCTATCTCTCATCCCTAATTTT 1196
Query 999 CCCATTAAAACAA-CAACGCCTTCTTCTACACGGCGGCGATCATTAACTCCGTCGATGAA 1057
|||||||| ||| |||| |||||||||||||||||||||||| |||| |||||||||||
Sbjct 1197 CCCATTAAG-CAAGCAACACCTTCTTCTACACGGCGGCGATCAGTAACACCGTCGATGAA 1255
Query 1058 CTCAGAGGACTCCGTGACGACGACG-----G-CG---TTTTGCGACAAAGGTGATGTGTA 1108
|||||||||||||| |||||||||| | || ||||| ||||| |||||||||||
Sbjct 1256 CTCAGAGGACTCCGGGACGACGACGACTACGACGGCGTTTTGTGACAAGGGTGATGTGTA 1315
Query 1109 CGGGAACGGAGGAGGAGAAACGAGCAAGTTGCTTAACCTTTTTGTTTAATGCAAAACGGC 1168
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1316 CGGTAACGGAGGAGGAGAAACGACCAAGTTGCTTAACCTTTTTGTTTAATGCAAAACGGC 1375
Query 1169 GTCGGTTTTTCGCAGACTTAGTCTAGGGTTTAAAATGTAATTTTACACATTTTCTTC-T- 1226
| ||||||| | |||| |||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1376 GGCGGTTTT-CTCAGAGTTAGTCTAGGGTTTTAAATGTAATTTTACACATTTTCTTCCTT 1434
Query 1227 --------AT---T---GGACCGGCGAATTAACAACTACGTCGTTTTGTTCTCTCGGTTT 1272
|| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 TTTCCTGGATAAATATTGGACCGGCGAATTAACAACTACGTCGTTTTGTTCTCTCGGTTT 1494
Query 1273 AGAGTCCCCC--------A---TTAACCAAT-GTAAAACTTTATTGAGTGAAAA 1314
||||||||| | ||||||||| ||||||||||||||||||||||
Sbjct 1495 TGAGTCCCCCCCCCCCCCACCATTAACCAATTGTAAAACTTTATTGAGTGAAAA 1548
Score = 121 bits (65), Expect = 2e-26
Identities = 86/95 (91%), Gaps = 6/95 (6%)
Strand=Plus/Plus
Query 1 ACACAACTTTTCGCGGAAACACGGAGCCGCTCGCACCCATCATCTTGGAATCTTTTACCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 48 ACACAACTTTTCGCGGAAACACGGAGCCGCTCGCACCCATCATCTTGGAATATTTTACCA 107
Query 61 CTC------TCTGTCTCTCTAAGGTCACTTCACAA 89
| | ||| ||||||||||||||||||||||
Sbjct 108 CACACACACTCTCTCTCTCTAAGGTCACTTCACAA 142
> AT4G37540.1 | Symbols: LBD39 | LOB domain-containing protein
39 | chr4:17639533-17640665 REVERSE LENGTH=995
Length=995
Score = 268 bits (145), Expect = 7e-71
Identities = 277/340 (81%), Gaps = 11/340 (3%)
Strand=Plus/Plus
Query 418 AAA-AAATGAGCTGCAATGGTTGCCGTGTTCTCCGGAAAGGTTGCAGCGAGAA-TTGTAT 475
||| ||||||| |||||||| || | ||||| || ||||||||||| || || || ||
Sbjct 151 AAAGAAATGAGTTGCAATGGATGTAGAGTTCTTCGAAAAGGTTGCAGTGA-AACATGCAT 209
Query 476 CCTCCGGCCATGTATTCAATGGATTGAAACCGCCGATG-CTCAAGGTCACGCCACCGTCT 534
||| || || || |||||||||| ||| ||||||| | | ||||| |||||||||||||
Sbjct 210 CCTTCGTCCTTGCCTTCAATGGATCGAATCCGCCGA-GTCACAAGGCCACGCCACCGTCT 268
Query 535 TCGTCGCTAAATTCTTCGGCCGTGCTGGTCTCATGTCCTTT-ATCTCCGCCGTACCGGAA 593
|||||||||||||||| || ||||||||||||||||| ||| |||||| ||||||| |||
Sbjct 269 TCGTCGCTAAATTCTTTGGTCGTGCTGGTCTCATGTC-TTTCATCTCCTCCGTACCTGAA 327
Query 594 TCTC-AACGTCCTGCTTTGTTTCAGTCTTTGCTCTACGAAGCTTGTGGAAGAACTGTGAA 652
||| |||||||||||||||||||||| ||| | | ||||| ||||| ||||| |||||
Sbjct 328 -CTCCAACGTCCTGCTTTGTTTCAGTCGTTGTTGTTTGAAGCGTGTGGGAGAACGGTGAA 386
Query 653 TCCAGTAAACGGAGCAATCGGAATGTTATGGACT-GGAAATTGGAATATCTGTCAAGCGG 711
||| || |||||||| | || ||||| ||||| |||| | || | | || |||||||
Sbjct 387 TCCGGTTAACGGAGCGGTTGGTATGTTGTGGACCAGGAACT-GGCACGTATGCCAAGCGG 445
Query 712 CTGTTGAAACCGTGCTTCGCGGCGGTTCTTTAAGACCGAT 751
| ||||| || || ||||||||||| ||||| |||||||
Sbjct 446 CGGTTGAGACTGTTCTTCGCGGCGGAACTTTACGACCGAT 485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64658301960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5