BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496856
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67410.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1208 0.0
> AT5G67410.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G14850.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:26896600-26897463 REVERSE LENGTH=864
Length=864
Score = 1208 bits (654), Expect = 0.0
Identities = 807/877 (92%), Gaps = 26/877 (3%)
Strand=Plus/Plus
Query 1 ATGCCAACGAGTCAGCATCATGTCGTTAGAACAGACATTGCAGTGTTAAAATCTCAGATT 60
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1 ATGCCAACGAGTCAGCATCATGTCGTTAGAACAGACATTTCAGAGTTAAAATCTCAGATT 60
Query 61 GAGAAGAGGATTGGTCGGGCCAAAACTGAGAGCTACCTTAATCTCTTATCGAAATTCTTG 120
|||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 61 GAGAAGAGGATTGGTCGGGCCAAAACAGAGAGTTACCTTAATCTCTTATCAAAATTCTTG 120
Query 121 AGTTTGAAAATCAGCAAATCTGATTTCGATAAGCTAATCATTGCGACGGTGAAGAGGGAG 180
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 AGCTTGAAAATCAGCAAATCTGATTTCGATAAGCTAATCATTGTGACGGTGAAGAGGGAG 180
Query 181 AATATAAGTCTACACAACGCTTTGCTAAGAGGGATTCTTAAGAACGTATGTCTCTCTTCA 240
|||||||||||||||||||||||||| ||||||||||||||||| ||| | |||| |||
Sbjct 181 AATATAAGTCTACACAACGCTTTGCTTAGAGGGATTCTTAAGAA--TATATGTCTC-TCA 237
Query 241 AAG--AC-ACCTCCGTT-GATAAAGAATGGTGT--AGT-AGATTCAGAGAAGAAGAAGAA 293
||| || |||||| || | ||||||||||||| ||| ||| | | | |||||||||||
Sbjct 238 AAGACACTACCTCCATTCG-TAAAGAATGGTGTAGAGTCAGA-T-A-ACAAGAAGAAGAA 293
Query 294 GCAATTATATGGAGTTTTTCAATCTTTGTGCAAAGACCTTCCTAAATCGCCTCGTAAAGG 353
|||| || |||||| ||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct 294 GCAACTAAATGGAGCTTTTCAATCTTTGTGCAAAGAACTTCCTAGATCACCTCGTAAAGG 353
Query 354 AAGGACTCAACGGAGG-TT--TAAAGATAGTAATGTTAGCAAAGGTAAAAGTCTAATCAC 410
|||||||||||||||| || ||||||| ||||| |||||||||| || |||||| ||||
Sbjct 354 AAGGACTCAACGGAGGCTTAATAAAGATGGTAATATTAGCAAAGGGAAGAGTCTAGTCAC 413
Query 411 TGAGGTTGTTTCTTCTAGTGGTAGACAACAATGGTTAATGGAAAATGGTGAAGAAGTTGA 470
|||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct 414 TGAGGTTGTTTCTTCTAGTGGTAGGCAACAATGGTCAATGGAAAATGTTGAAGAAGTTGA 473
Query 471 CCAATTGATTCGATGTTGGAGAAGTCAACCTATTGAAGCTCCTTTTGGTGTTAATCTTAG 530
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CCAATTGATTCCATGTTGGAGAAGTCAACCTATTGAAGCTCCTTTTGGTGTTAATCTTAG 533
Query 531 AGATGTTATAGAGAAACAACATCGTATAGGCACATGTTGTTGCTCCTCTGGTGAGCTTCC 590
|||||||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct 534 AGATGTTATAAAGAAACAACATCGTATAGACACGTGTTGTTACTCCTCTGGTGAGCTTCC 593
Query 591 TGATTCGGTTTCTTTAAAGAAGAAACTCGAAGATGACTCGGGGTTTATAGAGCAAGGATT 650
|||||||||||||||||||||||||||||||||||||| || | | | |||||||
Sbjct 594 TGATTCGGTTTCTTTAAAGAAGAAACTCGAAGATGACTTGG-----A--G-G-AAGGATT 644
Query 651 AGAGGTTTCGGTTGGGTTTGCCAACACGTTAAACGCAGGGTTGGATGTTTTCTTGAAGAG 710
||||||||||||||||||||| ||| |||||||||||||| | |||||||||||||||||
Sbjct 645 AGAGGTTTCGGTTGGGTTTGCTAACTCGTTAAACGCAGGGCTAGATGTTTTCTTGAAGAG 704
Query 711 ATTGATCAAACCATGTCTTGAATTAGCAGCTTCAAGGTCTAGTAACGCTTCACCAGCATC 770
|||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 705 ATTGATCAAACCGTGTCTTGAACTAGCAGCTTCAAGGTCTAGTAACGCTTCATCAGCATC 764
Query 771 TTCTCTGGTAGATTTTCAAGTAGCTATGGAGTTAAATCCGTCGATACTCGGGGAAGATTG 830
||||||||||||||||||||||||||||| |||||| || |||||||| |||||||||||
Sbjct 765 TTCTCTGGTAGATTTTCAAGTAGCTATGGCGTTAAACCCATCGATACTAGGGGAAGATTG 824
Query 831 GCCTGCAAAGCTTGAGAAGATCGCCTGCAGATTCAGA 867
|||| ||||||||||||||||||||||||||||||||
Sbjct 825 GCCTACAAAGCTTGAGAAGATCGCCTGCAGATTCAGA 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42297151774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5