BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496862
Length=1250
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67380.1 | Symbols: CKA1, ATCKA1 | casein kinase alpha 1 | c... 1434 0.0
> AT5G67380.1 | Symbols: CKA1, ATCKA1 | casein kinase alpha 1 |
chr5:26880966-26883430 REVERSE LENGTH=1467
Length=1467
Score = 1434 bits (776), Expect = 0.0
Identities = 892/945 (94%), Gaps = 19/945 (2%)
Strand=Plus/Plus
Query 324 GAAGATAAGAAGAGAGATTAAAATACTTCAGAACCTTTGCGGTGGGCCAAATATTGTCAA 383
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 488 GAAGATAAGAAGAGAGATTAAAATACTTCAGAACCTATGCGGTGGGCCAAATATTGTCAA 547
Query 384 GCTGCTTGATGTTGTTAGAGATCAACATTCGAAAACTCCAAGCTTGATTTTTGAATATGT 443
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 548 GCTGCTTGATGTTGTTAGAGATCAACATTCGAAAACTCCAAGCTTGATATTTGAATATGT 607
Query 444 TAACAGCACAGACTTTAAAGTTCTGTATCCTACGTTGACTGATTACGACATTCGTTACTA 503
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 608 TAACAGCACAGACTTTAAAGTTTTGTATCCTACGTTGACTGATTACGACATTCGTTACTA 667
Query 504 TATCTATGAGCTTTTGAAGGCACTGGACTTCTGCCATTCACAAGGAATAATGCACAGAGA 563
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 668 CATCTATGAGCTGTTGAAGGCACTAGACTTCTGCCATTCACAAGGAATAATGCACAGAGA 727
Query 564 CGTCAAGCCTCACAATGTTATGATTGACCATGAGCTGCGTAAGCTTCGTCTTATAGATTG 623
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 CGTCAAGCCTCATAATGTTATGATTGACCATGAGCTGCGTAAGCTTCGTCTTATAGATTG 787
Query 624 GGGTCTTGCTGAGTTTTACCACCCTGGAAAAGAGTATAATGTCCGTGTTGCTTCTAGATA 683
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 788 GGGTCTTGCTGAGTTTTACCACCCTGGAAAAGAGTATAATGTCCGTGTTGCCTCAAGATA 847
Query 684 CTTT-AAGGGACCTGAACTTCTCGTGGACTTGCAAGACTATGACTATTCATTGGATATGT 742
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 848 -TTTCAAGGGACCTGAACTTCTTGTGGACTTGCAAGACTATGACTATTCATTGGATATGT 906
Query 743 GGAGTCTTGGTTGTATGTTTGCTGGGATGATATTCCGTAAGGAACCTTTCTTCTACGGCC 802
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 907 GGAGTCTTGGCTGTATGTTTGCAGGGATGATATTCCGTAAGGAACCTTTCTTCTACGGCC 966
Query 803 ATGACAATCAGGATCAGCTAGTGAAAATTGCCAAGGTGATTGGGACTGACGAATTGAATG 862
||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 967 ATGACAACCAGGATCAGCTAGTGAAAATCGCCAAGGTGCTTGGGACTGACGAATTGAATG 1026
Query 863 CTTATCTGAACAAGTACCAGTTAGAACTTGACCCACAACTCGAAGCACTTGTTGGGCGGC 922
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1027 CTTATCTGAACAAGTACCAGTTAGAACTTGATCCACAACTGGAAGCACTTGTTGGGCGGC 1086
Query 923 ATAGCAGGAAACCTTGGTCCAAATTCATCAACGCAGACAATCAGCATTTGGTGTCACCAG 982
|||||||||||||||||||||||||||||||||||||||||||||| || || ||||| |
Sbjct 1087 ATAGCAGGAAACCTTGGTCCAAATTCATCAACGCAGACAATCAGCACTTAGTTTCACCCG 1146
Query 983 AGGCGATTGATTTCCTCGACAAGCTACTTCGGTATGATCATCAAGATAGATTAACTGCAA 1042
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1147 AGGCGATTGATTTCCTCGACAAGCTACTTCGGTATGATCATCAAGACAGATTAACTGCAA 1206
Query 1043 AAGAAGCCATGGCACACGCTTACTTCGCCCAAGTTAGGGCAGCAGAAACCAGCAGAATGA 1102
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 AAGAAGCCATGGCGCACGCTTACTTCGCCCAAGTTAGGGCAGCAGAAACCAGCAGAATGA 1266
Query 1103 GAAGTCAATGAA-CACAGAGATCTGTCT-T-TG-AA-CTTTCTGGTGATGATGATGGTAT 1157
|||||||||||| ||||||||||| ||| | | || ||| ||| ||||||||||||||
Sbjct 1267 GAAGTCAATGAAACACAGAGATCTCTCTGTCTATAAACTTACTGATGATGATGATGGTAA 1326
Query 1158 TGTTCATCTTTTCTTCAA-GTATTCTTAT-A--TCAAGATGATGTTTCTTCTGTCCAAC- 1212
|||||||||||||||||| ||||| || | | ||||| ||||||||||||||||||||
Sbjct 1327 TGTTCATCTTTTCTTCAAAGTATTTTTTTTAAATCAAGGTGATGTTTCTTCTGTCCAACT 1386
Query 1213 -A--AA----TTTGTCCTGACTTCAAATGTCTGAAACCTCTTATA 1250
| || |||||||||| ||| |||||||||||| |||||||
Sbjct 1387 TATTAAACAATTTGTCCTGAATTCGAATGTCTGAAACGTCTTATA 1431
Score = 438 bits (237), Expect = 5e-122
Identities = 291/316 (92%), Gaps = 8/316 (3%)
Strand=Plus/Plus
Query 19 CTCTTCTTCGAATCTCCTCTTCGACGTCTC----T--TGTGCGCCGTCTTAACCTTACGT 72
||||||||||| |||||||||||||||||| | |||||||||||||| ||||||||
Sbjct 78 CTCTTCTTCGATTCTCCTCTTCGACGTCTCTTGTTACTGTGCGCCGTCTTAGCCTTACGT 137
Query 73 GCGCCGTTGGCGCACTCTCCTATCCTACGCTCATCTATCGTCACTCCCACAGCGAAAGCT 132
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 138 GCGCCAACGGCGCACTCTCCTATCCTACGCTCATCTATCGTCACTCCCACAGCGAGAGCT 197
Query 133 GTCTCCGACGTTTCCGGTAGTACCACGATCGATCCAGATTCTT-TCGTCGAGATCTCTGA 191
||||| || ||||||||| |||| |||||||||||||||| || |||| |||||||||||
Sbjct 198 GTCTCGGAAGTTTCCGGTTGTACTACGATCGATCCAGATT-TTCTCGTAGAGATCTCTGA 256
Query 192 TTCTAACCAGACGCGAGCGATGTCGAAAGCTCGTGTTTACACCGACGTTAACGTGATTCG 251
||||||||||||||| |||||||||||||||||||| |||||||| || || ||||||||
Sbjct 257 TTCTAACCAGACGCGGGCGATGTCGAAAGCTCGTGTGTACACCGAAGTCAATGTGATTCG 316
Query 252 ACCTAAGGATTATTGGGATTACGAGTCACTCATTGTTCAATGGGGGGAGCAAGATGATTA 311
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 ACCCAAGGATTATTGGGATTACGAGTCACTCATTGTTCAATGGGGGGAGCAAGATGATTA 376
Query 312 TGAGGTAGTAAGGAAG 327
||||||||||||||||
Sbjct 377 TGAGGTAGTAAGGAAG 392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61445467080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5