BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496863
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67370.1 | Symbols: | Protein of unknown function (DUF1230)... 1714 0.0
> AT5G67370.1 | Symbols: | Protein of unknown function (DUF1230)
| chr5:26877553-26879542 REVERSE LENGTH=1175
Length=1175
Score = 1714 bits (928), Expect = 0.0
Identities = 1064/1130 (94%), Gaps = 8/1130 (1%)
Strand=Plus/Plus
Query 1 GTGTATCAGGTGCTCTGCTCCACTGACCTTTAATCTTTATTCAACAATACTCTCAGGAAC 60
|||||||||||||||||||||||| |||||||||||| | ||||| |||||||||||||
Sbjct 1 GTGTATCAGGTGCTCTGCTCCACTTACCTTTAATCTTCAATCAACGGTACTCTCAGGAAC 60
Query 61 AGGAATCAGATCGAGCAATGCTCAGGTTAATCGTTAGTTACCCTCTGATTCCCAAGAAAC 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 61 AGGAATCAGATCGAGCAATGCTCAGGTTAATCGTTAATTACCCTCTGATTCCCAAGATAT 120
Query 121 CCCACCGGGTTTGTAGTAAC---AGTAGTAAGCTCGGGAGTTACTATGATTCTTCGTCGA 177
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCACCGGGTTTGTAGTAACAGTAGTAGTAAGCTCGGGAGTTACTATGATTCTTCGTCGA 180
Query 178 TCATCAAATATGGCGGAATCGGCGATGATGTTGGTAAGAAGCAGGAGCTTCTTCTTAA-T 236
|||| ||||||||||||||| |||||| |||||||||||||||||||||| ||| ||| |
Sbjct 181 TCATAAAATATGGCGGAATCAGCGATGTTGTTGGTAAGAAGCAGGAGCTTTTTC-TAAGT 239
Query 237 GTTTCGGTGAAAGCTGTGGAAGACAAAGGTAATAATGGAGGTGGAAGCATGAGTTTCCCT 296
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 240 GTTTCGGTGAAAGCAGTGGAAGACAAAGGTAACAATGGAGGTGGAAGCATGAGTTTCTCG 299
Query 297 GGTCAAAGCTGGGATCCAAGTTCAGAGATTGAAGTTCCTTCAGACCAAAGACCCGTGAAT 356
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 300 GGTCAAAGCTGGGATCCTAGTTCCGAGATTGAAGTTCCTTCAGACCAAAGACCCGTGAAT 359
Query 357 GAGTATTCGTCTTTGAAGGAAGGAATGTTGTATTCATGGGGAGAATTGGGTCCAAGCGAG 416
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAGTATTCGTCTCTAAAGGAAGGAATGTTGTATTCATGGGGAGAATTGGGTCCAAGCGAA 419
Query 417 TTCTTTATCCGTCTCGGTGGTCTTTGGTTGGTTACTTTCACTGTTCTTGGTGTTCCTATT 476
|||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||| ||
Sbjct 420 TTCTTTATTCGTCTAGGTGGTCTTTGGTTGGTCACTTTCACTGTTCTTGGAGTTCCTGTT 479
Query 477 GCAGCTGCTAGCTTTAATCCTTCCAGAGAGCCTTTGAGATTTGTTCTAGCTGCAGGGACA 536
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 480 GCAGCTGCTAGCTTTAATCCTTCCAGAGAGCCTTTGAGATTTATTCTAGCTGCAGGGACT 539
Query 537 GGAACGTTATTCCTGGTTTCATTGATTGTCTTGAGGATTTACCTGGGATGGAGCTATGTT 596
||||| ||||| || ||||| |||||||||||||| ||||| ||||| ||||||||||||
Sbjct 540 GGAACTTTATTTCTCGTTTCTTTGATTGTCTTGAGAATTTATCTGGGGTGGAGCTATGTT 599
Query 597 GGAGATAGACTACTTTCTGCAGTTATACCATATGAAGAGAGTGGATGGTATGATGGACAA 656
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 600 GGAGATAGACTACTTTCTGCAGTTATACCTTACGAAGAGAGTGGATGGTATGATGGACAA 659
Query 657 ATGTGGGTGAAACCACCAGAGGTGTTGGCTCGCGACAGGTTGTTAGGTTCTTACAAGGTG 716
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 660 ATGTGGGTCAAACCACCTGAGGTGTTGGCTCGCGACAGGTTGTTGGGTTCTTACAAGGTG 719
Query 717 AAGCCAGTGATCAAGATGCTCAAACAAACATTAATCGGAACAGGAGCTTTACTCGTTTCA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAGCCAGTGATCAAGATGCTCAAACAAACATTAATCGGAACAGGAGCTTTACTCGTTTCA 779
Query 777 GCATTTGTGCTATTCGTTTTCGCAACACCAGTTGAGGATTTCTTTAAAACCACTCTAAGA 836
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 780 GCATTCGTGCTATTCGTTTTCGCAACACCAGTCGAGGATTTCTTTAAAACCACTCTAGGA 839
Query 837 TCTAAAGAACACCAACCCGAAGTTTCCATTTCAAGAACCAGCAACAAGTTCAATATAAGA 896
|||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCTACAGAAAACCAACCAGAAGTTTCCATTTCAAGAACCAGCAACAAGTTCAATATAAGA 899
Query 897 AAAGAACAACTGCTTCGGTTACCTGTAGATGTTGTGACTGACGATGATCTGGCAGCAGCC 956
||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 900 AAAGAACAATTGCTTCGACTACCCGTAGATGTTGTGACTGACGATGATCTGGCAGCAGCC 959
Query 957 GCAGCTGAGGCTGCTGATGGAAGACCTGTCTATTGCAGAGACCGTTACTACCGTGCATTA 1016
|| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 960 GCGGCTGAGGCTGCGGATGGAAGACCTGTCTATTGCAGAGACCGGTACTACCGTGCATTA 1019
Query 1017 GCAGGTGGTCAATACTGCAAATGGGAAGATCTTGTCAAATAGTTGTCACTA-TAATAGAA 1075
||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||
Sbjct 1020 GCAGGTGGTCAATACTGCAAATGGGAAGATCTTGTTAAATAGTTGTCAC-ACTAATAGAA 1078
Query 1076 TACCAAGACCACACACTACAATATGTAATTTTTGATTAAAATGGCTTTAA 1125
|||||| || ||| |||||| ||||||||||||| |||||||||||||||
Sbjct 1079 TACCAACAC-ACATACTACAGTATGTAATTTTTGCTTAAAATGGCTTTAA 1127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56074008765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5