BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496864
Length=2639
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67360.1 | Symbols: ARA12 | Subtilase family protein | chr5:... 3879 0.0
> AT5G67360.1 | Symbols: ARA12 | Subtilase family protein | chr5:26871891-26874579
REVERSE LENGTH=2689
Length=2689
Score = 3879 bits (2100), Expect = 0.0
Identities = 2479/2656 (93%), Gaps = 49/2656 (2%)
Strand=Plus/Plus
Query 1 AATGATTTTTTCGTACGCATCCTCAtcttcttcttcttcttcttcttcttctctctACTA 60
||||||| |||||||||||||||| |||||||||||||| || ||| ||||||
Sbjct 1 AATGATTCCTTCGTACGCATCCTCA------TCTTCTTCTTCTTC-TC-TCT-TCTACTG 51
Query 61 TATTTAAACTCCCTCTCATCTTCTCCTTCGATTCAGAGAGAGACACAACACACAATCTCA 120
||||||||| | ||||| |||||||||| ||| |||||||||||||||||||| ||||||
Sbjct 52 TATTTAAACACTCTCTCGTCTTCTCCTTGGATCCAGAGAGAGACACAACACACCATCTCA 111
Query 121 ATCATGTCTTCTTCGTTTCTCTCCT----T-C---C-TCCT--T-CTTTGTCTAGGATTC 168
||||||||||||||||||||||||| | | | |||| | |||||||||||||||
Sbjct 112 ATCATGTCTTCTTCGTTTCTCTCCTCCACTGCTTTCTTCCTCCTCCTTTGTCTAGGATTC 171
Query 169 TGCCACGTGTCCTCCTCCTCCTCCCAACATGGAACTTACATCGTTCACATGGCTAAATCT 228
|||||||||||||| ||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 172 TGCCACGTGTCCTCTTCCTCCTCCGACCAAGGAACTTACATCGTTCACATGGCTAAATCT 231
Query 229 CAGATGCCGTCGACCTTCGACCTCCACTCTAACTGGTACGATTCGTCTCTCAGATCTGTC 288
|||||||||||| | ||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 232 CAGATGCCGTCGTCTTTCGACCTCCACTCTAACTGGTACGATTCATCTCTCAGATCTATC 291
Query 289 TCCGACTCTGCTGAATTGCTATACACTTACGAGAACGCGATTCATGGATTCTCCACTCGG 348
|||||||| || |||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 292 TCCGACTCAGCCGAATTGCTCTACACTTACGAGAACGCGATTCATGGATTCTCAACACGG 351
Query 349 CTAACTCAAGAAGAAGCCGACTCGCTCATGACTCAACCTGGTGTTATCTCCGTTTTACCG 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CTAACTCAAGAAGAAGCCGACTCGCTCATGACTCAACCTGGTGTTATCTCCGTTTTACCG 411
Query 409 GAGCACCGTTACGAGCTTCACACGACTCGGACTCCTCTCTTCCTCGGTCTTGATGAACAC 468
||||||||||||||||| ||||| ||||| |||||||||||||||||||| || ||||||
Sbjct 412 GAGCACCGTTACGAGCTACACACCACTCGTACTCCTCTCTTCCTCGGTCTCGACGAACAC 471
Query 469 ACCGCAGATCTATTCCCCGAAACCGGCTCTTACAGCGACGTCGTCGTCGGAGTTCTTGAT 528
||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| |||
Sbjct 472 ACCGCAGATCTGTTCCCTGAAGCCGGCTCTTACAGCGACGTCGTCGTCGGAGTTCTCGAT 531
Query 529 ACCGGAGTTTGGCCCGAGAGTAAAAGCTACTCCGACGAAGGATTCGGTCCGATTCCTTCG 588
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 532 ACCGGAGTTTGGCCCGAGAGTAAAAGCTACTCCGACGAAGGATTCGGTCCTATTCCTTCC 591
Query 589 ACCTGGAAAGGAGGATGCGAGGCCGGAACTAATTTCACGGCTTCTCTCTGTAACCGTAAA 648
|||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 592 TCCTGGAAAGGCGGATGCGAGGCCGGAACCAATTTCACCGCTTCTCTCTGTAACCGTAAA 651
Query 649 CTAATCGGAGCAAGATTCTTCGCTCGTGGTTACGAATCAACGATGGGACCAATCGATGAA 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CTAATCGGAGCAAGATTCTTCGCTCGTGGTTACGAATCAACGATGGGACCAATCGATGAA 711
Query 709 TCTAAAGAATCAAGATCTCCTAGAGACGACGATGGCCACGGAACTCACACGTCATCAACC 768
|||||||||||||||||||||||||||||||| || |||||||||||||| ||||| |||
Sbjct 712 TCTAAAGAATCAAGATCTCCTAGAGACGACGACGGTCACGGAACTCACACCTCATCGACC 771
Query 769 GCCGCTGGATCCGTCGTCGAAGGAGCTAGCTTATTAGGTTACGCTTCAGGAACAGCTCGT 828
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 772 GCCGCTGGATCCGTCGTTGAAGGAGCTAGCTTATTAGGCTACGCTTCAGGAACAGCTCGT 831
Query 829 GGGATGGCTCCACGCGCTCGTGTCGCTGTATACAAAGTTTGTTGGGTCGGTGGTTGTTTC 888
|| |||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||
Sbjct 832 GGTATGGCTCCACGCGCTCGTGTCGCTGTTTACAAAGTCTGTTGGCTCGGTGGTTGTTTC 891
Query 889 AGCTCAGATATTTTAGCTGCGATCGATAAAGCCATCGCCGATAACGTCAACGTTTTGTCG 948
|||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 892 AGCTCAGATATTTTAGCTGCAATCGATAAAGCCATCGCCGATAACGTCAATGTCCTGTCG 951
Query 949 ATGTCACTCGGCGGTGGAATGTCGGATTATTATAGAGACGGTGTTGCAATCGGAGCTTTC 1008
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 952 ATGTCACTCGGCGGTGGAATGTCGGATTATTATAGAGACGGTGTTGCGATCGGAGCATTC 1011
Query 1009 GCCGCCATGGAAAGAGGGATTTTAGTTTCTTGCTCAGCTGGTAATGCTGGTCCGAGTAGT 1068
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1012 GCCGCCATGGAAAGAGGGATTTTAGTATCTTGCTCAGCTGGTAATGCTGGTCCGAGTAGT 1071
Query 1069 TATAGTTTATCAAACGTAGCTCCATGGATTACAACTGTTGGTGCTGGTACTTTAGATCGT 1128
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1072 TCTAGTTTATCAAACGTAGCTCCATGGATCACAACTGTTGGTGCTGGTACTTTAGATCGT 1131
Query 1129 GATTTTCCGGCGCTTGCGATTCTCGGTAGCGGGAAGAATTTCACCGGAGTTTCTTTGTTT 1188
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1132 GATTTTCCGGCGCTTGCGATTCTCGGTAACGGCAAGAATTTCACCGGAGTTTCTTTGTTT 1191
Query 1189 AAAGGAGAAGCTTTACCGGATAAATTGTTGCCGTTTATTTACGCCGGGAATGCTAGTAAT 1248
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1192 AAAGGAGAAGCTTTACCGGATAAATTGTTGCCGTTTATTTACGCTGGGAATGCTAGTAAT 1251
Query 1249 GCTACTAATGGTAATCTCTGTATGACCGGAACTTTAATCCCGGAGAAAGTAAAGGGGAAG 1308
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1252 GCTACTAATGGTAATCTCTGTATGACCGGAACTTTGATCCCGGAGAAAGTAAAGGGGAAG 1311
Query 1309 ATTGTGATGTGTGACAGAGGAGTCAATGCTAGAGTTCAGAAAGGAGATGTGGTTAAAGCA 1368
|||||||||||||| |||||| | |||||||||||||||||||| |||||||||||||||
Sbjct 1312 ATTGTGATGTGTGATAGAGGAATTAATGCTAGAGTTCAGAAAGGTGATGTGGTTAAAGCA 1371
Query 1369 GCTGGTGGAGTTGGAATGATTCTTGCTAACACGGCGGCGAATGGTGAAGAGCTTGTTGCG 1428
|| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1372 GCAGGTGGAGTTGGAATGATTCTGGCTAACACTGCGGCGAATGGTGAAGAGCTTGTTGCG 1431
Query 1429 GATGCTCATTTGTTACCGGCGACCACCGTTGGTGAAAAAGCGGGGGATATAATCCGGCAT 1488
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1432 GATGCTCATTTGTTACCGGCGACCACCGTTGGTGAAAAAGCCGGTGATATAATCCGGCAT 1491
Query 1489 TACGTAACAACTGATCCTAATCCAACCGCTTCGATTTCAATCTTAGGAACCGTCGTTGGT 1548
||||| || |||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1492 TACGTGACTACTGATCCTAATCCCACCGCTTCGATTTCAATCTTAGGAACAGTCGTCGGT 1551
Query 1549 GTTAAACCATCTCCGGTGGTTGCAGCGTTTAGCTCACGAGGACCGAATTCGATTACGCCG 1608
||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||
Sbjct 1552 GTTAAACCATCTCCGGTTGTCGCAGCGTTTAGCTCACGTGGACCGAATTCGATTACACCG 1611
Query 1609 AATATTCTTAAACCGGATTTGATCGCTCCTGGAGTCAACATCCTCGCCGCTTGGACCACT 1668
|||||||||||||||||| |||||||||||||||| |||||||||||||| |||||| |
Sbjct 1612 AATATTCTTAAACCGGATCTGATCGCTCCTGGAGTAAACATCCTCGCCGCGTGGACCGGT 1671
Query 1669 GCTGCAGGACCAACCGGGCTCGCTTCCGATTCTCGCCGCGTGGAGTTCAATATAATCTCC 1728
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1672 GCTGCTGGACCAACCGGACTCGCTTCCGATTCTCGCCGCGTGGAGTTCAATATCATCTCT 1731
Query 1729 GGAACGTCGATGTCTTGCCCTCACGTGAGCGGTTTAGCGGCGCTTCTCAAGTCGGTGCAT 1788
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1732 GGGACGTCGATGTCTTGCCCTCACGTTAGTGGTTTAGCGGCGCTTCTCAAGTCGGTGCAT 1791
Query 1789 CCTGAATGGAGCCCGGCGGCGATTAGATCGGCGCTTATGACCACCGCTTACAAAACCTAC 1848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 CCTGAATGGAGCCCGGCGGCGATTAGATCGGCGCTTATGACCACCGCTTACAAAACCTAC 1851
Query 1849 AAAGACGGTAAACCATTACTCGACATCGCGACGGGGAAGCCTTCGACGCCGTTCGATCAC 1908
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1852 AAAGACGGTAAACCGTTACTCGACATCGCGACAGGGAAGCCTTCGACGCCGTTCGATCAC 1911
Query 1909 GGAGCAGGACACGTGTCACCAACAACCGCCACTAATCCAGGACTCATCTACGATCTAACG 1968
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1912 GGTGCAGGACACGTGTCACCAACAACTGCCACTAATCCAGGACTCATCTACGATCTAACG 1971
Query 1969 ACGGAGGATTACTTAGGCTTCCTCTGCGCATTGAACTACACGTCGTCGCAAAT-CAAAAG 2027
||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| | || |
Sbjct 1972 ACGGAGGATTACTTAGGCTTCCTCTGCGCATTGAATTACACATCGCCGCAAATTCGAA-G 2030
Query 2028 TGTCTCGAGACGTAATTACACTTGTGATCCGAGTAAATCGTACTCCGTCGCTGATTTGAA 2087
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2031 TGTCTCGAGACGTAATTACACTTGCGATCCGAGTAAATCGTACTCGGTCGCTGATTTGAA 2090
Query 2088 TTACCCTTCGTTCGCTGTTAACGTTGACGGTGCCGGCGCGTATAAATACACGCGCACTGT 2147
||||| |||||||| ||||||||||| || | ||| |||||||| ||||||||||| ||
Sbjct 2091 CTACCCGTCGTTCGCCGTTAACGTTGATGGAGTCGGTGCGTATAAGTACACGCGCACGGT 2150
Query 2148 AACGAGCGTGGGAGGAGCTGGGACTTATTCGGTTAAAGTAACTTCGGAGACAACAGGAGT 2207
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 2151 GACGAGCGTGGGAGGAGCTGGGACTTACTCGGTTAAAGTAACTTCGGAGACGACAGGAGT 2210
Query 2208 CAAAATTTCGGTTGAACCGGCGGTTTTGAATTTCAAAGAAGCTAACGAGAAAAAATCGTA 2267
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2211 CAAGATTTCGGTTGAACCGGCGGTTTTGAATTTCAAGGAAGCTAACGAGAAAAAATCGTA 2270
Query 2268 TACGGTGACGTTTACTGTAGACTCGTCAAAGCCGTCTGGATCTAACAGCTTTGGGAGTAT 2327
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2271 TACGGTGACGTTTACTGTAGACTCGTCGAAGCCGTCTGGATCTAACAGCTTTGGGAGTAT 2330
Query 2328 TGAATGGTCGGATGGGAAACACGTGGTGGGAAGTCCCGTGGCAATTAGCTGGACATAGCC 2387
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 2331 TGAATGGTCGGATGGGAAACACGTGGTGGGAAGTCCCGTGGCGATTAGCTGGACATAGTC 2390
Query 2388 GTAAATTATGAGAAAATGAAAGGGGTTGAATGGAAA-GAAAACGTGTTCACAGAGTTATT 2446
||||||||||||||| ||||||||||| ||||||| ||||| ||||| ||||| |||||
Sbjct 2391 GTAAATTATGAGAAA-TGAAAGGGGTTTTATGGAAAAGAAAAGGTGTTTACAGATTTATT 2449
Query 2447 GTAATGCCGTTTTTAGATAAGAAGAAGC-TCTGTTTAGCAAAAACGGCATGCAGTCTGTT 2505
||||||||||||||||||| |||||| | ||||||||||||||||| |||||||||||||
Sbjct 2450 GTAATGCCGTTTTTAGATACGAAGAAACCTCTGTTTAGCAAAAACGACATGCAGTCTGTT 2509
Query 2506 AAGGCTTGCCTAGTTTGTTTTTGGGATGTCTAATGTCTTGCTGTTTTTTATCTTTCTAAT 2565
||| ||||||||||||||||||||||||||| || || | | |||| | | |
Sbjct 2510 AAGACTTGCCTAGTTTGTTTTTGGGATGTCT--TG-CT-G-T-TTTT--A-------A-T 2553
Query 2566 TTTAAAAAGAAATATATTCCCCGGCCACACAACAATAGTAGCTGGGTC-C-CTAGGTGTT 2623
||||||||||||||||||| ||||| ||| | || ||||||||||| | |||||||||
Sbjct 2554 TTTAAAAAGAAATATATTCTCCGGCTACA-A-CA---GTAGCTGGGTCTCTCTAGGTGTT 2608
Query 2624 TTATCATGTGACTTGA 2639
||||||||||||||||
Sbjct 2609 TTATCATGTGACTTGA 2624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131036055116
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5