BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496869
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67310.1 | Symbols: CYP81G1 | cytochrome P450, family 81, su... 730 0.0
AT5G67300.1 | Symbols: ATMYBR1, ATMYB44, MYBR1, MYB44 | myb dom... 730 0.0
> AT5G67310.1 | Symbols: CYP81G1 | cytochrome P450, family 81,
subfamily G, polypeptide 1 | chr5:26855216-26856941 REVERSE
LENGTH=1638
Length=1638
Score = 730 bits (395), Expect = 0.0
Identities = 491/537 (91%), Gaps = 7/537 (1%)
Strand=Plus/Plus
Query 882 GGAAGGTTTAATGAAACTGAAAACGGAAGTAAACAACGTTTCCG-TAGAAGGGCGTCTGT 940
||||| ||||| |||||| ||||||||| ||||| | |||| || |||||||||| |||
Sbjct 1010 GGAAGTTTTAAGGAAACTCAAAACGGAACTAAACGAGGTTT-CGAAAGAAGGGCGTGTGT 1068
Query 941 TGGAGGAATCAGATACCGGCAAGTGTCCGTATCT-AACAAATGTGATCTCTGAAACACTC 999
| |||||||||||||| ||||||||||| ||||| ||| |||||||||||||| || ||
Sbjct 1069 TTGAGGAATCAGATACTGGCAAGTGTCCCTATCTCAAC-AATGTGATCTCTGAGACTCTT 1127
Query 1000 CGTTTGTATCCGGCAGCGCCGTTACTTGTCCCACACGCTTCATCCGCTGACTGTGAAGTC 1059
||||||| |||||| ||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1128 CGTTTGTTTCCGGCGGCGCCCTTACTTGTCCCACACGCTTCATCCACTGACTGTGAAGTC 1187
Query 1060 GCTGGATTTGACATTCCACGTGGCACCTGGTTATTTATCAATGCGTGGGCTATTCAAAGA 1119
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||
Sbjct 1188 GCTGGATTTGACATTCCACGTCGCACCTGGCTATTTATCAATGCGTGGGCTATTCAGAGA 1247
Query 1120 GACCCGAAGGTATGGGATGATGACCCGGAAGCTTTCAAACCAGAGAGGTTTGAATCAGAG 1179
||||| || |||| || |||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1248 GACCCAAATGTAT-GG--GATGACCCAGAAACTTTCAAACCAGAGAGGTTTGAATCAGAG 1304
Query 1180 ACTCATCGTGGTAAGTATCTGCCTTTTGGAATCGGCAGAAGAGCATGTCCTGGTATGGGC 1239
|| ||||||||||||| ||||||||| |||||||| || |||||||||||||||||||||
Sbjct 1305 ACCCATCGTGGTAAGTTTCTGCCTTTCGGAATCGGTAGGAGAGCATGTCCTGGTATGGGC 1364
Query 1240 CTGGCCCAACTTGTACTGAGCTTAGCTTTAGGCTCATTGATCCAGTGTTTTGATTGGGAG 1299
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1365 CTGGCCCAACTAGTACTGAGCTTAGCTTTAGGCTCATTGATCCAGTGTTTCGATTGGGAG 1424
Query 1300 AGAGACAATGACGTGGCAGTTGACATGTCGGAAGGAAGGGGTATTACCATGCCCAAAGCT 1359
|||||||||||||| || ||||||||||||||||||| |||| |||||||||||||| ||
Sbjct 1425 AGAGACAATGACGTTGCCGTTGACATGTCGGAAGGAAAGGGTCTTACCATGCCCAAATCT 1484
Query 1360 GTGCCTTTAGTTGCCAAATGCAAGTCTTTACCAATCCTGGACAAAGTTGTTCTTTAA 1416
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1485 GTGCCTTTAGTTGCCAAATGCAAGTCTTTACCAATCCTCGACAAACTTGTTCTTTAA 1541
Score = 682 bits (369), Expect = 0.0
Identities = 534/611 (87%), Gaps = 22/611 (4%)
Strand=Plus/Plus
Query 1 ATTGATTTGTCTCTCCTCGCTCTCATCGCCGGATTTATCACGGTGGCTTATCTTTTCCGA 60
|||||||||| ||| ||||||||||| |||||||| || | ||||| ||| ||||||||
Sbjct 63 ATTGATTTGTTTCTACTCGCTCTCATGGCCGGATTCATTGCAGTGGCGTATGTTTTCCGA 122
Query 61 TCAAAGCAGAAGAAGAA--GA-AG--AATTTACTGCCAAG---TCCAGT-A--GGACACC 109
||||||||||||||||| | | || | ||| | | ||| || | |||||||
Sbjct 123 TCAAAGCAGAAGAAGAATTTACCGCCAA-ATCCTG-TAGGTTTTCCGGTGATCGGACACC 180
Query 110 TACACCTTCTCAAAGAACCTGTTCACCGTTCCCTTCGTGACCTCTCTCGAAACCTCCGCA 169
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 TCCACCTTCTCAAAGAACCTGTTCACCGTTCCCTTCGTGACCTCTCTCGAAACCTCGGCA 240
Query 170 GCGACGTGTTTTTTCTACGCCTAGGTTCACGTCGAGCGGTTGTTGTGACGTCAGCTTCCG 229
|||||||||| |||| || ||||| || ||||||||||| ||||| ||||||||||| |
Sbjct 241 TCGACGTGTTTATTCTCCGGCTAGGCTCTCGTCGAGCGGTGGTTGTAACGTCAGCTTCAG 300
Query 230 CTGCGGAGGAGTTCTTATCTCATG-AAAACGATGTCATCTTCGCCAACAGGCCTCTCGCT 288
|||||||||||||||||||||| | |||||||||| | |||||||||||||||||||||
Sbjct 301 CTGCGGAGGAGTTCTTATCTCA-GCAAAACGATGTTGTTTTCGCCAACAGGCCTCTCGCT 359
Query 289 AGTTTAACTGAATACATGGGTTACAACTGCACGATCGTTAGCGCAGCTCTGTACGGCGAA 348
| ||||||||||||||||||||||||| |||| | |||||| |||||| |||||| ||
Sbjct 360 ACTTTAACTGAATACATGGGTTACAACAACACGCTGGTTAGCACAGCTCCGTACGGGGAG 419
Query 349 CATTGGCGCAGACTCCGCCGTTTCTGCGCCGTAGAGATCTTCTCCGCCGCTTGTCTCAGA 408
||||||||||||||||||||||||||||||||||| ||||| ||| ||||| ||||||||
Sbjct 420 CATTGGCGCAGACTCCGCCGTTTCTGCGCCGTAGATATCTTGTCCACCGCTCGTCTCAGA 479
Query 409 GACTCTTCGGATATACGGAGAGACGAAGTGAGAGCTCTGCTTCGGAAGATCTACGTGGAA 468
|||| ||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 480 GACTTTTCGGATATACGGAGAGACGAAGTGAGAGCTATGATTCGGAAGATCAACGTGGAA 539
Query 469 CTGGTAACATCAGGAGGAAATGACTTTGTCAGATTGAAACTCCAGCCGTTGCTTTATGGA 528
||||||||||||||||| | | | ||||||||||||||||||||||| ||||||||
Sbjct 540 CTGGTAACATCAGGAGGCA--G--T--GTCAGATTGAAACTCCAGCCGTTTCTTTATGGG 593
Query 529 CTTACGTTTAACATCCTTATGAGCATAGTCGCCGGAAAACGAGAGGAAGACGAGGAAACG 588
||||||| ||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 594 CTTACGTATAACATCCTAATGAGCATGGTCGCTGGAAAACGAGAGGAAGACGAGGAAACT 653
Query 589 AAGGAA-TTCG 598
|||||| ||||
Sbjct 654 AAGGAAGTTCG 664
> AT5G67300.1 | Symbols: ATMYBR1, ATMYB44, MYBR1, MYB44 | myb domain
protein r1 | chr5:26854022-26856006 FORWARD LENGTH=1985
Length=1985
Score = 730 bits (395), Expect = 0.0
Identities = 491/537 (91%), Gaps = 7/537 (1%)
Strand=Plus/Minus
Query 882 GGAAGGTTTAATGAAACTGAAAACGGAAGTAAACAACGTTTCCG-TAGAAGGGCGTCTGT 940
||||| ||||| |||||| ||||||||| ||||| | |||| || |||||||||| |||
Sbjct 1823 GGAAGTTTTAAGGAAACTCAAAACGGAACTAAACGAGGTTT-CGAAAGAAGGGCGTGTGT 1765
Query 941 TGGAGGAATCAGATACCGGCAAGTGTCCGTATCT-AACAAATGTGATCTCTGAAACACTC 999
| |||||||||||||| ||||||||||| ||||| ||| |||||||||||||| || ||
Sbjct 1764 TTGAGGAATCAGATACTGGCAAGTGTCCCTATCTCAAC-AATGTGATCTCTGAGACTCTT 1706
Query 1000 CGTTTGTATCCGGCAGCGCCGTTACTTGTCCCACACGCTTCATCCGCTGACTGTGAAGTC 1059
||||||| |||||| ||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1705 CGTTTGTTTCCGGCGGCGCCCTTACTTGTCCCACACGCTTCATCCACTGACTGTGAAGTC 1646
Query 1060 GCTGGATTTGACATTCCACGTGGCACCTGGTTATTTATCAATGCGTGGGCTATTCAAAGA 1119
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||
Sbjct 1645 GCTGGATTTGACATTCCACGTCGCACCTGGCTATTTATCAATGCGTGGGCTATTCAGAGA 1586
Query 1120 GACCCGAAGGTATGGGATGATGACCCGGAAGCTTTCAAACCAGAGAGGTTTGAATCAGAG 1179
||||| || |||| || |||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1585 GACCCAAATGTAT-GG--GATGACCCAGAAACTTTCAAACCAGAGAGGTTTGAATCAGAG 1529
Query 1180 ACTCATCGTGGTAAGTATCTGCCTTTTGGAATCGGCAGAAGAGCATGTCCTGGTATGGGC 1239
|| ||||||||||||| ||||||||| |||||||| || |||||||||||||||||||||
Sbjct 1528 ACCCATCGTGGTAAGTTTCTGCCTTTCGGAATCGGTAGGAGAGCATGTCCTGGTATGGGC 1469
Query 1240 CTGGCCCAACTTGTACTGAGCTTAGCTTTAGGCTCATTGATCCAGTGTTTTGATTGGGAG 1299
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1468 CTGGCCCAACTAGTACTGAGCTTAGCTTTAGGCTCATTGATCCAGTGTTTCGATTGGGAG 1409
Query 1300 AGAGACAATGACGTGGCAGTTGACATGTCGGAAGGAAGGGGTATTACCATGCCCAAAGCT 1359
|||||||||||||| || ||||||||||||||||||| |||| |||||||||||||| ||
Sbjct 1408 AGAGACAATGACGTTGCCGTTGACATGTCGGAAGGAAAGGGTCTTACCATGCCCAAATCT 1349
Query 1360 GTGCCTTTAGTTGCCAAATGCAAGTCTTTACCAATCCTGGACAAAGTTGTTCTTTAA 1416
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1348 GTGCCTTTAGTTGCCAAATGCAAGTCTTTACCAATCCTCGACAAACTTGTTCTTTAA 1292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69828958095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5