BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496871
Length=1507
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67290.1 | Symbols: | FAD-dependent oxidoreductase family p... 2019 0.0
> AT5G67290.1 | Symbols: | FAD-dependent oxidoreductase family
protein | chr5:26848148-26849846 REVERSE LENGTH=1583
Length=1583
Score = 2019 bits (1093), Expect = 0.0
Identities = 1386/1520 (91%), Gaps = 49/1520 (3%)
Strand=Plus/Plus
Query 1 AAAAGATCAGCCCAAAAAGAAACTAAGCCCAATAAATAGTTTTCTAACAAACGTGTGGAC 60
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 2 AAAAGATCAGCCCAAAAAGAAACTAAGCCCAATAAATA-ATTTCTAACTAACGTGTGGAC 60
Query 61 TCGGTGAG---TCATCTACCTCATCTCGGTAATGGCGGTGATCTCATCGTTATTATTCCC 117
|||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 TCGGTGAGTCATCATCTATCTCATCTCGGTGATGGCGGTGATCTCATCGTTATTATTCCC 120
Query 118 TCCGACGTTATCCCGACGAACAATCACGATCTG--------C-TCGAAATCAATGGCGGC 168
|||| |||| |||||||||||||||||||||| | |||||||||||||||||
Sbjct 121 TCCGGTGTTAACCCGACGAACAATCACGATCTGCTCCAACTCATCGAAATCAATGGCGGC 180
Query 169 GAAAAACCAAATCGATGGAGAAACCTCGAAGCGGGTCGTTGTATGCGGCGGCGGCGTAAT 228
||||| ||||||| || ||||||||||||||||||| ||||||||||||| || |||||
Sbjct 181 TAAAAAACAAATCGGTGAAGAAACCTCGAAGCGGGTCTTTGTATGCGGCGGTGGAGTAAT 240
Query 229 CGGCGTCTGCACTGCTTATTTCCTCGCCAAGAAAGGAATCGCCGTCACTCTCGTCGAGAA 288
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGGCGTCTGTACTGCTTATTTCCTCGCCAAGAAAGGAATCGCCGTCACTCTCGTCGAGAA 300
Query 289 ATCAGCCGTCGCGTGCGCTGCTTCCGGTAAAGCTGGTGGATTTCTCGCTTTCGATTGGTG 348
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 301 ATCAGCCGTCGCGTGCGCTGCTTCCGGTAAAGCCGGTGGATTTCTCGCTTTCGATTGGTG 360
Query 349 CGATGGAAGTCCTGTTGCGCCTTTAGCACGCGCGAGCTTTAACCTTCATCGATCACTCTC 408
|||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||| |
Sbjct 361 CGATGGAAGTCCTGTTGCGCATTTAGCACGCGCGAGCTTTAAACTCCATCGATCGCTCGC 420
Query 409 CGAGGAGCTAAACGGCGTCGAATCGTACGGGTACAGACCACTCACGACTCTTAGCCTCAC 468
|||||||||||||| |||||||||||||| |||||| ||||||||||||||||| ||||
Sbjct 421 TGAGGAGCTAAACGGTGTCGAATCGTACGGATACAGAGCACTCACGACTCTTAGCGTCAC 480
Query 469 CGTGACGGAAGCAACGCCAGGTTCCGGCGGTTTGGGTTTACCGGATTGGGTCAACGGCCC 528
|||||||||| ||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 CGTGACGGAATCAAAACCCGGTTCCGGCGGTTTGGGATTACCGGATTGGGTCAACGGCCC 540
Query 529 AGCTAAAAGCCCATCAACGATTGGTACGACTCAAACAACAGCACAAGTGCATCCACAGCT 588
|||||||||| |||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 541 AGCTAAAAGCACATCAACGATTGGTACAACTCAAACAACAGCACAAGTGCATCCTCAACT 600
Query 589 TTTCACACGGAAGCTGTTATCGACGGCGACG-GAGAAGTACGGTGTTGAGGTTGTTATCG 647
||| || |||||||| ||||||||||||| | ||||||||||||||||||||||| ||||
Sbjct 601 TTTTACTCGGAAGCTTTTATCGACGGCGA-GAGAGAAGTACGGTGTTGAGGTTGTGATCG 659
Query 648 GGAAATTGGAAGAGGTGAGAGTGGAATCAGG-ACGAGTTGACTCTATAGTGCTTGAAGGT 706
||||||| ||||||||||||||||||||||| | ||||| ||||| ||||||||||||||
Sbjct 660 GGAAATTAGAAGAGGTGAGAGTGGAATCAGGTA-GAGTTAACTCTGTAGTGCTTGAAGGT 718
Query 707 GGGAGAGTTATAGACACTGATGCGGTGGTTCTGGCGATGGGTCCATGGTCGAGCAAATTT 766
|||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 719 GGGAGAGTTATAGACACTGACGTGGTGGTTCTGGCGATGGGTCCATGGTCGAGTAAATTT 778
Query 767 GAGTTGTTGTCTTCGATTTTTAGGGTTTATGGTATTAAAGCTCACAGTATTGTCTTGGAA 826
||| |||||||||||||||||||||||||| ||| ||||||||| || ||||||||||||
Sbjct 779 GAGCTGTTGTCTTCGATTTTTAGGGTTTATTGTACTAAAGCTCATAGCATTGTCTTGGAA 838
Query 827 CCCAAGGAACCAAATTCTATAACACCTCATGCCCTTTTCTTAACTTATCGTCCTGCTCAT 886
|| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 839 CCGAAGGAACCAAATGCTATAACACCTCATGCCCTGTTCTTAACTTATCGTCCTGCTCAT 898
Query 887 GGTGGTGAAGCTTTGGACCCTGAAGTATACCCTCGTCCCACAGGTGAAGTGTACATATGT 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GGTGGTGAAGCTTTGGACCCTGAAGTATACCCTCGTCCCACAGGTGAAGTGTACATATGT 958
Query 947 GGAATGTCATCACAAGAAGAAGTACCTGATGATCCAGATCAGGTCACAAGCAATCCTGAA 1006
|||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||
Sbjct 959 GGAATGTCATCACAAGAAGAGGTACCTGATGATGCTGATCAGGTCACAAGCAATCCTGAA 1018
Query 1007 TCGATCCAGGTTCTCAAGAGAGTTGCGAAAACAGTCTCGAGCTATCTAAACGAAGAAAAC 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TCGATCCAGGTTCTCAAGAGAGTTGCGAAAACAGTCTCGAGCTATCTAAACGAAGAAAAC 1078
Query 1067 GCTCTAGTGAAAGCAGAGCAAGCATGTTTCTTGCCCAGCACAGAAGATGGAGTTCCTGTG 1126
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1079 GCTCTAGTGAAAGCAGAGCAAGCTTGTTTCTTGCCCAGCACAGAAGATGGAGTTCCTGTG 1138
Query 1127 ATCGGAGAGATTCCAGGAATCAAGGGCTGTTATGTCGGCACAGGACATAGTTGTTGGGGG 1186
|||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 1139 ATCGGAGAGATTCCAGGAATCAAGGGATGTTATGTAGGCACAGGGCATAGTTGTTGGGGG 1198
Query 1187 ATTCTTAATGGTCCAGCCACCGGTGCTGCATTGGCTGAGCTTATTGTAGACGGCGTAGCC 1246
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 1199 ATTCTTAATGGTCCAGCCACTGGTGCTGCTTTGGCTGAGCTTATTGTAGACGGTGTAGCC 1258
Query 1247 ACCAGTGTTGATCTTAGCCGGTTTAGTCCTTCCCGGTTTATCAAGCGAAGATGAAGAGTA 1306
|| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1259 ACAAGTGTTGATCTTAGCCGGTTTAGTCCTTCCCGGTTTAGCAAACGAAGATGAAGAGTA 1318
Query 1307 TAGTATATACTATATAGTGT--GAAAAGCTAATCTGTTCCATGCTG-T--GTTCTTTGAA 1361
||||| ||| || | |||| | || || || | | ||| | ||||||||||
Sbjct 1319 TAGTA-ATA-TAGA--GTGTTCGTTGAGATA-TCACATAAAAGCTACTCTGTTCTTTGAA 1373
Query 1362 GTTTTAGCATACAGAATTGTGATTACGAGGAATCTT----T-T-A-A-TGTGAT---TG- 1409
|| | |||| |||||||||||| |||||||||||| | | | | |||||| ||
Sbjct 1374 GTCTAAGCAAACAGAATTGTGA--ACGAGGAATCTTAAAATGTGATAATGTGATACGTGA 1431
Query 1410 T---ATTTTGTAATCGTTGAGCATTTTAGTCGAACCGGTTAGATCTAAAGCCAAACTGCA 1466
| |||||||||||||||||||||||||| | || |||||||||||||| |||||| |
Sbjct 1432 TTGTATTTTGTAATCGTTGAGCATTTTAGTAGTACTGGTTAGATCTAAAGGCAAACT-C- 1489
Query 1467 AGTTAACTCAAAATGCTAAT 1486
| ||||||||||||||||
Sbjct 1490 --T-AACTCAAAATGCTAAT 1506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74347007145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5