BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496872
Length=2467
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67280.1 | Symbols: RLK | receptor-like kinase | chr5:268422... 3731 0.0
AT4G37250.1 | Symbols: | Leucine-rich repeat protein kinase fa... 246 7e-64
> AT5G67280.1 | Symbols: RLK | receptor-like kinase | chr5:26842270-26845190
REVERSE LENGTH=2480
Length=2480
Score = 3731 bits (2020), Expect = 0.0
Identities = 2330/2479 (94%), Gaps = 23/2479 (1%)
Strand=Plus/Plus
Query 1 ACAATCACATGGCCTTTTCAAAAAACCAATCCTTTAGTTCTCTATCGATGCGTAAGCCTG 60
||||||||||||||||||||||||| ||||| |||||||||||||||||||||| || ||
Sbjct 1 ACAATCACATGGCCTTTTCAAAAAATCAATCTTTTAGTTCTCTATCGATGCGTAGGCTTG 60
Query 61 AAGAACGATGACGACAGTCGCCGCCGATCTCCGCCGTTATC-TTT-CTGTAATTACCGTT 118
||| | |||||||||||||||||||||||||| |||||||| ||| ||| |||||||||
Sbjct 61 AAGCATGATGACGACAGTCGCCGCCGATCTCCACCGTTATCTTTTCCTG--ATTACCGTT 118
Query 119 TTGTC-CTTCCTCTTTTGCGACCAATCAGCTCTTGCTCTGAACACAGACGGTGTTCTTCT 177
|| || ||| || | |||||| || | |||||||||||| ||||||||||||||||||
Sbjct 119 TT-TCTTTTCTTCCTCTGCGACAAAACCTCTCTTGCTCTGACCACAGACGGTGTTCTTCT 177
Query 178 TCTCTCTTTCCGTTACTCAATCGTCGACGATCCTCTTTCCGTTTTACGGAGCTGGAGATT 237
|||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||
Sbjct 178 TCTCTCTTTCCGTTACTCAATCGTTGACGATCCTCTTTACGTTTTTCGGAGCTGGAGATT 237
Query 238 AGAAGACGAGACCCCTTGCTCTTGGCGAGGTGTCACGTGCGATGAATCTTCCCGGCACGT 297
|| |||||||| |||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 238 CGACGACGAGACTCCTTGCTCTTGGCGTGGTGTCACGTGCGATGCATCTTCCCGGCACGT 297
Query 298 GACTGTTCTTTCACTTCCGAGCTCGAACCTTACCGGTACACTTCCTTCAAATTTAGGTTC 357
||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 298 GACTGTTCTGTCACTTCCAAGCTCGAACCTTACCGGCACACTACCTTCAAATTTGGGTTC 357
Query 358 ACTCAATTCACTTCAAAGACTTGATCTTTCCAACAATTCGATCAATGGGTCTTTCCCTGT 417
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 358 ACTCAATTCACTTCAAAGACTTGATCTTTCCAACAATTCCATCAATGGGTCTTTCCCGGT 417
Query 418 TTCGCTTCTCAACGCGACGGAGCTTCGATTTCTTGATCTGTCCGATAATCACATTTCCGG 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 418 TTCGCTTCTCAACGCGACGGAGCTTCGATTTCTTGATCTGTCCGATAATCACATCTCCGG 477
Query 478 CGAACTACCGTCGAGTTTTGGCGCGCTTTGGAACCTCAAAGTGTTGAATCTCTCCGATAA 537
| ||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 478 TGCACTACCGGCGAGTTTTGGCGCGCTTTCGAACCTCCAAGTGTTGAATCTCTCCGATAA 537
Query 538 TTCCTTCGTCGGCGAGTTACCGAAGACATTAGGTTGGAATCGGAACTTAACGGTGATTTC 597
||||||||||||||| |||||||| |||||||| ||||| ||||||||||||| ||||||
Sbjct 538 TTCCTTCGTCGGCGAATTACCGAACACATTAGGATGGAACCGGAACTTAACGGAGATTTC 597
Query 598 ACTGAAGAACAATTATTTCTCCGGCCAGATTCCGGGAGGTTTTAAGTCGACGGAGTATCT 657
||| |||| || ||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 598 ACTTCAGAAAAACTATTTATCCGGCGGGATTCCGGGAGGTTTTAAGTCGACGGAGTATCT 657
Query 658 TGACCTGTCGTCAAATTTGATCAAAGGCTCGTTGCCGTCACATTTCAGAGGGAATCGTTT 717
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 658 TGATCTCTCGTCAAATTTGATCAAAGGCTCGTTGCCGTCACATTTCAGAGGGAATCGTCT 717
Query 718 ACGCTATTTCAACGTTTCGTTCAACAGAATCTCCGGCAAGATTCCATCAGGTTTCGCCGA 777
|||||||||||||| ||||| |||||||||||||||| ||||||| ||||||||||||||
Sbjct 718 ACGCTATTTCAACGCTTCGTACAACAGAATCTCCGGCGAGATTCCGTCAGGTTTCGCCGA 777
Query 778 TGAAATCCCAGCAA-ACGCCACCGTCGATCTCTCATTCAACCAGCTCACGGGTCAAATCC 836
|||||||| | || |||||||||| ||||||||||||||||| || || ||||||||||
Sbjct 778 CGAAATCCC-GGAAGACGCCACCGTTGATCTCTCATTCAACCAACTTACAGGTCAAATCC 836
Query 837 CTGGTTTTCGGGTTCTCGATAACCAAGAATCTAACTCTTTCTCCGGTAACCCGGGTCTCT 896
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 837 CGGGTTTTCGGGTTCTCGATAACCAAGAATCCAACTCTTTCTCCGGTAACCCGGGTCTCT 896
Query 897 GCGGATCCAACCCA-GCAAAACACCCTTGCCGTGACGGTGAAGCAACCTCTCCACCTCCA 955
|||||||| | ||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 897 GCGGATCCGA-CCATGCAAAACACCCTTGTCGTGACGGTGAAGCAACCTCTCCACCTCCA 955
Query 956 TCGCCGACTCCAAATTCCCCTCCTGCATTAGCTGCTATACCAAATACCATTGGCTTAACC 1015
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 956 TCGCCGACTCCAAATTCTCCTCCTGCATTAGCTGCTATACCAAATACTATTGGCTTAACC 1015
Query 1016 AATCACCCAATTAGCTCCAAAACCGGTCAAAAATCAAAATGGGATCATAAACCGGGGCTT 1075
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1016 AATCACCCAATTAGCTCCAAAACCGGTCCGAAATCAAAATGGGATCATAAACCGGTGCTT 1075
Query 1076 ATCATTGGCATCGTTGTCGGTGACTTAGCCGGTTTAGCTATCCTCGGGATTGTGTTTTTC 1135
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1076 ATCATTGGCATTGTTGTCGGTGACTTAGCCGGTTTAGCAATCCTCGGGATTGTGTTTTTC 1135
Query 1136 TACATTTACCAGTCGAGAAAAAGGAAGACCGTAACGGCTACGTCAAAATGGTCCACGTCA 1195
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TACATTTACCAGTCGAGAAAACGGAAGACCGTAACGGCTACGTCAAAATGGTCCACGTCA 1195
Query 1196 TCAACAGATTCCAAAGTCTCAAAATGGTACTGTCTACGCAAATCCGTTTACGTTGACGGT 1255
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1196 TCAACAGATTCCAAGGTCTCAAAATGGTACTGTTTACGCAAATCCGTTTACGTTGACGGT 1255
Query 1256 GACTGTGAAGACGAAGAAGAAGAATCCGAGACATCGGAATCCGAATCCGACGAAGAGAAC 1315
||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1256 GACTGCGAAGAAGAAGAAGAGGAATCTGAGACATCGGAATCCGAATCCGACGAAGAGAAC 1315
Query 1316 CCGGTCGGACCAAATCGACGGTCAGGATTAGACGATCAAGACAAGAAA-GGAACGTTAGT 1374
||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 1316 CCGGTCGGACCAAATCGACGGTCAGGATTAGACGATCAAGA-AAAAAAGGGAACGTTAGT 1374
Query 1375 AAATCTCGATTCAGAGAAAGAACTTGAAATCGAAACGCTTCTCAAAGCTTCAGCTTATAT 1434
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1375 GAATCTCGATTCAGAGAAAGAGCTTGAAATCGAAACGCTTCTCAAAGCATCAGCTTATAT 1434
Query 1435 TTTGGGAGCCACCGGTTCGAGCATAATGTATAAAGCGGTTCTTCAAGACGGAACGGCTGT 1494
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1435 TTTGGGAGCCACCGGTTCGAGCATAATGTATAAAGCGGTGCTTCAAGACGGAACAGCTGT 1494
Query 1495 GGCGGTTCGACGTATAGCTGAATGCGGTTTAGACCGGTTTAGAGATTTCGAAGCTCAGGT 1554
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 GGCGGTTCGACGAATAGCTGAATGCGGTTTAGACCGGTTTAGAGATTTCGAAGCTCAGGT 1554
Query 1555 TCGAGCCGTGGCTAAGTTAATACATCAAAACCTGGTACGAATTCGAGGTTTCTATTGGGG 1614
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1555 TCGAGCCGTGGCTAAGTTAATACATCCAAACCTGGTACGAATTCGCGGTTTCTATTGGGG 1614
Query 1615 AGCCGACGAGAAGCTTGTCATTTACGATTTTGTCCCTAACGGCAGCCTCGCTAATGCCCG 1674
| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1615 ATCCGACGAGAAACTTGTCATTTACGATTTTGTCCCTAACGGCAGCCTCGCTAACGCCCG 1674
Query 1675 TTACCGGAAAGTGGGCTCCTCTCCTTGTCATTTACCTTGGGAAGCTCGGCTCAAGATAGC 1734
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1675 TTACCGGAAAGTGGGCTCCTCTCCTTGTCATTTACCTTGGGACGCTCGGCTCAAGATAGC 1734
Query 1735 AAAAGGTATAGCCCGTGGGCTAACATATGTACACGACAAGAAGTACGTGCATGGTAACCT 1794
|||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1735 AAAAGGCATAGCTCGCGGGCTAACATACGTACACGACAAGAAGTACGTGCATGGTAACCT 1794
Query 1795 CAAGCCTAGTAATATCCTTTTGGGCTTAGATATGGAGCCTAAAGTTGCCGATTTCGGGCT 1854
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1795 CAAGCCTAGCAATATCCTTTTGGGCTTAGATATGGAGCCTAAAGTTGCGGATTTCGGTCT 1854
Query 1855 TGAGAAGCTTTTGATTGGCGACATGAGTTATAGAGCTGGTGGATCGGCTCCTATATTCGG 1914
|||||||||||||||||| ||||||||||||||| | |||||||||||||| ||||||||
Sbjct 1855 TGAGAAGCTTTTGATTGGGGACATGAGTTATAGAACCGGTGGATCGGCTCCAATATTCGG 1914
Query 1915 AAGCAAGAGATCCACAACATCTCTTGAGTTTGGGCCGAGTCCAAGCCCAAGTCCAAGTTC 1974
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 AAGCAAGAGATCCACAACGTCTCTTGAGTTTGGGCCGAGTCCAAGCCCAAGTCCAAGTTC 1974
Query 1975 AGTCGGGTTACCTTACAATGCCCCGGAATCTCTTCGGAGCATAAAGCCGAA-TCAGAAAT 2033
|||||||||||| |||||||| || |||||||||||||| || |||||||| || |||||
Sbjct 1975 AGTCGGGTTACCCTACAATGCTCCAGAATCTCTTCGGAGTATTAAGCCGAATTC-GAAAT 2033
Query 2034 GGGATGTGTACTCGTTCGGAGTTATTCTCCTGGAGTTACTTACGGGAAAGATCGTGGTGG 2093
|||||||||||||||||||||||||||| || ||| |||| |||||||||||||||||||
Sbjct 2034 GGGATGTGTACTCGTTCGGAGTTATTCTGCTTGAGCTACTAACGGGAAAGATCGTGGTGG 2093
Query 2094 TTGATGAGCTTGGACAGGTTAATGGGCTTGTGATTGATGACGGTGAGCGGGCAATTCGGA 2153
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2094 TCGACGAGCTTGGACAGGTTAATGGGCTTGTGATTGATGACGGTGAGCGGGCAATTCGGA 2153
Query 2154 TGGCGGACTCTGCTATACGGGCTGAGTTAGAAGGCAAAGAAGAAGCTGTGTTGGCATGTT 2213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2154 TGGCGGACTCTGCTATACGGGCTGAGTTAGAAGGCAAAGAAGAAGCTGTGTTGGCATGTT 2213
Query 2214 TGAAAATGGGCCTAGCTTGTGCATCTCCAATACCACAGAGAAGGCCCAATATCAAAGAGG 2273
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2214 TGAAAATGGGCCTAGCTTGTGCGTCTCCAATACCACAGAGAAGGCCCAATATCAAAGAGG 2273
Query 2274 CTTTACAAGTTCTCGAGAGATTCCCTGTTCATTTTAGTCAACAGTAATGATAATAATTAA 2333
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2274 CTTTGCAAGTTCTCGAGAGATTCCCTGTTCATTCTAGTCAACAGTAATGATAATAATTAA 2333
Query 2334 GACCAAGAAAAGACTTAAATAACTTGACTGTGTGTACTTAGAGTTTAGATTGATAGGCGA 2393
|||||||||| || ||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 2334 GACCAAGAAA-GAGTTAAATAACTTGACTGTGTGTACTTAGAGTT-AGATTGATAGGCAA 2391
Query 2394 GTTTTTTATGTTCTTTTGTGGCTTCTGATTTTGAATTTATATTTGGTTTT-A----AGTG 2448
|||| || |||||||||||||||||||||||||||||| ||||||| | | ||||
Sbjct 2392 GTTTG--ATCTTCTTTTGTGGCTTCTGATTTTGAATTTATTTTTGGTTATGATTTTAGTG 2449
Query 2449 ACAATAATATCTCTGGGCT 2467
||||| |||||||||||||
Sbjct 2450 ACAATTATATCTCTGGGCT 2468
> AT4G37250.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr4:17527650-17530506 REVERSE LENGTH=2761
Length=2761
Score = 246 bits (133), Expect = 7e-64
Identities = 410/539 (76%), Gaps = 37/539 (7%)
Strand=Plus/Plus
Query 1387 AGAGAAAGA-ACTTGAAATCGAAACGCTTCTCAAAGCTTCAGCTTATATTTTGGGAGCCA 1445
|||||| || | | || || || || || || || ||||||||||||||||| |||||||
Sbjct 1629 AGAGAAGGAGA-TGGAGATTGAGACTCTGCTTAAGGCTTCAGCTTATATTTTAGGAGCCA 1687
Query 1446 CCGGTTCGAGCATAATGTATAAAGCGGTTCTTCAAGACGGAACGGCTGTGGCGGTTCGAC 1505
| |||||||| |||||||||||||| |||||| ||||||| | || | | |||||||| |
Sbjct 1688 CAGGTTCGAGTATAATGTATAAAGCCGTTCTTGAAGACGGTAGGGTTTTCGCGGTTCGTC 1747
Query 1506 GTA-TAGCTGAATGCGG--T-T-T-AG-ACCGGTTT-AGAGATTTCGAAG-CTCAGGTTC 1556
| | | | |||| ||| | | | || ||||||| || ||||| | || | || |||
Sbjct 1748 G-ACTCGGTGAAAACGGTTTATCTCAGCGCCGGTTTAAG-GATTTTG-AGCCGCACATTC 1804
Query 1557 GAGCC-GTGGCTAAGTTAATACATCAAAACCTGG-TACGAATTCGAGGTTTCTATTGGGG 1614
||||| ||| || || | || | || ||| || || || | || |||||||||||
Sbjct 1805 GAGCCATTGG-GAAATTGGTTCACCCGAATTTGGTTA-GACTTTGTGGGTTCTATTGGGG 1862
Query 1615 -AGCCGACGAGAAGCTTGTCATTTACGATTTTGTCCCTAACGGCAGCCTCG-CTAATGCC 1672
| |||||||||| || |||||||||||||||||||||||||||||||||| | || ||
Sbjct 1863 TA-CCGACGAGAAACTAGTCATTTACGATTTTGTCCCTAACGGCAGCCTCGTC-AACCCC 1920
Query 1673 CGTTACCGGAAAGT-GG-GC-TCCTCT-C-CT-TGTCATTTACCTTGGGAAGCTCGGCTC 1726
|||||||| |||| || | || ||| | | | ||| |||| |||||| ||||||||
Sbjct 1921 CGTTACCGAAAAGGAGGAGGGTCTTCTTCACCGTATCACCTACCGTGGGAAACTCGGCTC 1980
Query 1727 AAGATAGCAAAAGGTATAGCCCGTGGGCTAACATATGTACACGACAAGAAGTACGTGCAT 1786
||||||||||| || || || |||||||| | ||| | ||||| |||||| | ||||||
Sbjct 1981 AAGATAGCAAAGGGCATTGCACGTGGGCTGGCTTATCTCCACGAGAAGAAGCATGTGCAT 2040
Query 1787 GGTAACCTCAAGCCTAGTAATATCCTTTTGGGCT-TAGATATGGAGCCTAAAGTTGCCGA 1845
|| ||| | |||||||| || || ||||||||| | || ||||| || ||| | | |||
Sbjct 2041 GGAAACTTGAAGCCTAGCAACATACTTTTGGGCCAT-GACATGGAACCCAAAATAGGCGA 2099
Query 1846 TTTCGGGCTTGAGAAG-CTT-TTGATTGGCGACATGAGTTATA---GAGCTGGTGGATC 1899
|||||| || || ||| ||| || | ||||| | || || | |||||||||||||
Sbjct 2100 TTTCGGACTCGA-AAGGCTTCTT-ACAGGCGAAACAAGCTACATTCGAGCTGGTGGATC 2156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122407340920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5