BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496872 Length=2467 Score E Sequences producing significant alignments: (Bits) Value AT5G67280.1 | Symbols: RLK | receptor-like kinase | chr5:268422... 3731 0.0 AT4G37250.1 | Symbols: | Leucine-rich repeat protein kinase fa... 246 7e-64 > AT5G67280.1 | Symbols: RLK | receptor-like kinase | chr5:26842270-26845190 REVERSE LENGTH=2480 Length=2480 Score = 3731 bits (2020), Expect = 0.0 Identities = 2330/2479 (94%), Gaps = 23/2479 (1%) Strand=Plus/Plus Query 1 ACAATCACATGGCCTTTTCAAAAAACCAATCCTTTAGTTCTCTATCGATGCGTAAGCCTG 60 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||| || || Sbjct 1 ACAATCACATGGCCTTTTCAAAAAATCAATCTTTTAGTTCTCTATCGATGCGTAGGCTTG 60 Query 61 AAGAACGATGACGACAGTCGCCGCCGATCTCCGCCGTTATC-TTT-CTGTAATTACCGTT 118 ||| | |||||||||||||||||||||||||| |||||||| ||| ||| ||||||||| Sbjct 61 AAGCATGATGACGACAGTCGCCGCCGATCTCCACCGTTATCTTTTCCTG--ATTACCGTT 118 Query 119 TTGTC-CTTCCTCTTTTGCGACCAATCAGCTCTTGCTCTGAACACAGACGGTGTTCTTCT 177 || || ||| || | |||||| || | |||||||||||| |||||||||||||||||| Sbjct 119 TT-TCTTTTCTTCCTCTGCGACAAAACCTCTCTTGCTCTGACCACAGACGGTGTTCTTCT 177 Query 178 TCTCTCTTTCCGTTACTCAATCGTCGACGATCCTCTTTCCGTTTTACGGAGCTGGAGATT 237 |||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| Sbjct 178 TCTCTCTTTCCGTTACTCAATCGTTGACGATCCTCTTTACGTTTTTCGGAGCTGGAGATT 237 Query 238 AGAAGACGAGACCCCTTGCTCTTGGCGAGGTGTCACGTGCGATGAATCTTCCCGGCACGT 297 || |||||||| |||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 238 CGACGACGAGACTCCTTGCTCTTGGCGTGGTGTCACGTGCGATGCATCTTCCCGGCACGT 297 Query 298 GACTGTTCTTTCACTTCCGAGCTCGAACCTTACCGGTACACTTCCTTCAAATTTAGGTTC 357 ||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||| ||||| Sbjct 298 GACTGTTCTGTCACTTCCAAGCTCGAACCTTACCGGCACACTACCTTCAAATTTGGGTTC 357 Query 358 ACTCAATTCACTTCAAAGACTTGATCTTTCCAACAATTCGATCAATGGGTCTTTCCCTGT 417 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 358 ACTCAATTCACTTCAAAGACTTGATCTTTCCAACAATTCCATCAATGGGTCTTTCCCGGT 417 Query 418 TTCGCTTCTCAACGCGACGGAGCTTCGATTTCTTGATCTGTCCGATAATCACATTTCCGG 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 418 TTCGCTTCTCAACGCGACGGAGCTTCGATTTCTTGATCTGTCCGATAATCACATCTCCGG 477 Query 478 CGAACTACCGTCGAGTTTTGGCGCGCTTTGGAACCTCAAAGTGTTGAATCTCTCCGATAA 537 | ||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct 478 TGCACTACCGGCGAGTTTTGGCGCGCTTTCGAACCTCCAAGTGTTGAATCTCTCCGATAA 537 Query 538 TTCCTTCGTCGGCGAGTTACCGAAGACATTAGGTTGGAATCGGAACTTAACGGTGATTTC 597 ||||||||||||||| |||||||| |||||||| ||||| ||||||||||||| |||||| Sbjct 538 TTCCTTCGTCGGCGAATTACCGAACACATTAGGATGGAACCGGAACTTAACGGAGATTTC 597 Query 598 ACTGAAGAACAATTATTTCTCCGGCCAGATTCCGGGAGGTTTTAAGTCGACGGAGTATCT 657 ||| |||| || ||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 598 ACTTCAGAAAAACTATTTATCCGGCGGGATTCCGGGAGGTTTTAAGTCGACGGAGTATCT 657 Query 658 TGACCTGTCGTCAAATTTGATCAAAGGCTCGTTGCCGTCACATTTCAGAGGGAATCGTTT 717 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 658 TGATCTCTCGTCAAATTTGATCAAAGGCTCGTTGCCGTCACATTTCAGAGGGAATCGTCT 717 Query 718 ACGCTATTTCAACGTTTCGTTCAACAGAATCTCCGGCAAGATTCCATCAGGTTTCGCCGA 777 |||||||||||||| ||||| |||||||||||||||| ||||||| |||||||||||||| Sbjct 718 ACGCTATTTCAACGCTTCGTACAACAGAATCTCCGGCGAGATTCCGTCAGGTTTCGCCGA 777 Query 778 TGAAATCCCAGCAA-ACGCCACCGTCGATCTCTCATTCAACCAGCTCACGGGTCAAATCC 836 |||||||| | || |||||||||| ||||||||||||||||| || || |||||||||| Sbjct 778 CGAAATCCC-GGAAGACGCCACCGTTGATCTCTCATTCAACCAACTTACAGGTCAAATCC 836 Query 837 CTGGTTTTCGGGTTCTCGATAACCAAGAATCTAACTCTTTCTCCGGTAACCCGGGTCTCT 896 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 837 CGGGTTTTCGGGTTCTCGATAACCAAGAATCCAACTCTTTCTCCGGTAACCCGGGTCTCT 896 Query 897 GCGGATCCAACCCA-GCAAAACACCCTTGCCGTGACGGTGAAGCAACCTCTCCACCTCCA 955 |||||||| | ||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 897 GCGGATCCGA-CCATGCAAAACACCCTTGTCGTGACGGTGAAGCAACCTCTCCACCTCCA 955 Query 956 TCGCCGACTCCAAATTCCCCTCCTGCATTAGCTGCTATACCAAATACCATTGGCTTAACC 1015 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 956 TCGCCGACTCCAAATTCTCCTCCTGCATTAGCTGCTATACCAAATACTATTGGCTTAACC 1015 Query 1016 AATCACCCAATTAGCTCCAAAACCGGTCAAAAATCAAAATGGGATCATAAACCGGGGCTT 1075 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 1016 AATCACCCAATTAGCTCCAAAACCGGTCCGAAATCAAAATGGGATCATAAACCGGTGCTT 1075 Query 1076 ATCATTGGCATCGTTGTCGGTGACTTAGCCGGTTTAGCTATCCTCGGGATTGTGTTTTTC 1135 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1076 ATCATTGGCATTGTTGTCGGTGACTTAGCCGGTTTAGCAATCCTCGGGATTGTGTTTTTC 1135 Query 1136 TACATTTACCAGTCGAGAAAAAGGAAGACCGTAACGGCTACGTCAAAATGGTCCACGTCA 1195 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1136 TACATTTACCAGTCGAGAAAACGGAAGACCGTAACGGCTACGTCAAAATGGTCCACGTCA 1195 Query 1196 TCAACAGATTCCAAAGTCTCAAAATGGTACTGTCTACGCAAATCCGTTTACGTTGACGGT 1255 |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1196 TCAACAGATTCCAAGGTCTCAAAATGGTACTGTTTACGCAAATCCGTTTACGTTGACGGT 1255 Query 1256 GACTGTGAAGACGAAGAAGAAGAATCCGAGACATCGGAATCCGAATCCGACGAAGAGAAC 1315 ||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 1256 GACTGCGAAGAAGAAGAAGAGGAATCTGAGACATCGGAATCCGAATCCGACGAAGAGAAC 1315 Query 1316 CCGGTCGGACCAAATCGACGGTCAGGATTAGACGATCAAGACAAGAAA-GGAACGTTAGT 1374 ||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||| Sbjct 1316 CCGGTCGGACCAAATCGACGGTCAGGATTAGACGATCAAGA-AAAAAAGGGAACGTTAGT 1374 Query 1375 AAATCTCGATTCAGAGAAAGAACTTGAAATCGAAACGCTTCTCAAAGCTTCAGCTTATAT 1434 |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 1375 GAATCTCGATTCAGAGAAAGAGCTTGAAATCGAAACGCTTCTCAAAGCATCAGCTTATAT 1434 Query 1435 TTTGGGAGCCACCGGTTCGAGCATAATGTATAAAGCGGTTCTTCAAGACGGAACGGCTGT 1494 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 1435 TTTGGGAGCCACCGGTTCGAGCATAATGTATAAAGCGGTGCTTCAAGACGGAACAGCTGT 1494 Query 1495 GGCGGTTCGACGTATAGCTGAATGCGGTTTAGACCGGTTTAGAGATTTCGAAGCTCAGGT 1554 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1495 GGCGGTTCGACGAATAGCTGAATGCGGTTTAGACCGGTTTAGAGATTTCGAAGCTCAGGT 1554 Query 1555 TCGAGCCGTGGCTAAGTTAATACATCAAAACCTGGTACGAATTCGAGGTTTCTATTGGGG 1614 |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 1555 TCGAGCCGTGGCTAAGTTAATACATCCAAACCTGGTACGAATTCGCGGTTTCTATTGGGG 1614 Query 1615 AGCCGACGAGAAGCTTGTCATTTACGATTTTGTCCCTAACGGCAGCCTCGCTAATGCCCG 1674 | |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1615 ATCCGACGAGAAACTTGTCATTTACGATTTTGTCCCTAACGGCAGCCTCGCTAACGCCCG 1674 Query 1675 TTACCGGAAAGTGGGCTCCTCTCCTTGTCATTTACCTTGGGAAGCTCGGCTCAAGATAGC 1734 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1675 TTACCGGAAAGTGGGCTCCTCTCCTTGTCATTTACCTTGGGACGCTCGGCTCAAGATAGC 1734 Query 1735 AAAAGGTATAGCCCGTGGGCTAACATATGTACACGACAAGAAGTACGTGCATGGTAACCT 1794 |||||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1735 AAAAGGCATAGCTCGCGGGCTAACATACGTACACGACAAGAAGTACGTGCATGGTAACCT 1794 Query 1795 CAAGCCTAGTAATATCCTTTTGGGCTTAGATATGGAGCCTAAAGTTGCCGATTTCGGGCT 1854 ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 1795 CAAGCCTAGCAATATCCTTTTGGGCTTAGATATGGAGCCTAAAGTTGCGGATTTCGGTCT 1854 Query 1855 TGAGAAGCTTTTGATTGGCGACATGAGTTATAGAGCTGGTGGATCGGCTCCTATATTCGG 1914 |||||||||||||||||| ||||||||||||||| | |||||||||||||| |||||||| Sbjct 1855 TGAGAAGCTTTTGATTGGGGACATGAGTTATAGAACCGGTGGATCGGCTCCAATATTCGG 1914 Query 1915 AAGCAAGAGATCCACAACATCTCTTGAGTTTGGGCCGAGTCCAAGCCCAAGTCCAAGTTC 1974 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1915 AAGCAAGAGATCCACAACGTCTCTTGAGTTTGGGCCGAGTCCAAGCCCAAGTCCAAGTTC 1974 Query 1975 AGTCGGGTTACCTTACAATGCCCCGGAATCTCTTCGGAGCATAAAGCCGAA-TCAGAAAT 2033 |||||||||||| |||||||| || |||||||||||||| || |||||||| || ||||| Sbjct 1975 AGTCGGGTTACCCTACAATGCTCCAGAATCTCTTCGGAGTATTAAGCCGAATTC-GAAAT 2033 Query 2034 GGGATGTGTACTCGTTCGGAGTTATTCTCCTGGAGTTACTTACGGGAAAGATCGTGGTGG 2093 |||||||||||||||||||||||||||| || ||| |||| ||||||||||||||||||| Sbjct 2034 GGGATGTGTACTCGTTCGGAGTTATTCTGCTTGAGCTACTAACGGGAAAGATCGTGGTGG 2093 Query 2094 TTGATGAGCTTGGACAGGTTAATGGGCTTGTGATTGATGACGGTGAGCGGGCAATTCGGA 2153 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2094 TCGACGAGCTTGGACAGGTTAATGGGCTTGTGATTGATGACGGTGAGCGGGCAATTCGGA 2153 Query 2154 TGGCGGACTCTGCTATACGGGCTGAGTTAGAAGGCAAAGAAGAAGCTGTGTTGGCATGTT 2213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2154 TGGCGGACTCTGCTATACGGGCTGAGTTAGAAGGCAAAGAAGAAGCTGTGTTGGCATGTT 2213 Query 2214 TGAAAATGGGCCTAGCTTGTGCATCTCCAATACCACAGAGAAGGCCCAATATCAAAGAGG 2273 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2214 TGAAAATGGGCCTAGCTTGTGCGTCTCCAATACCACAGAGAAGGCCCAATATCAAAGAGG 2273 Query 2274 CTTTACAAGTTCTCGAGAGATTCCCTGTTCATTTTAGTCAACAGTAATGATAATAATTAA 2333 |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2274 CTTTGCAAGTTCTCGAGAGATTCCCTGTTCATTCTAGTCAACAGTAATGATAATAATTAA 2333 Query 2334 GACCAAGAAAAGACTTAAATAACTTGACTGTGTGTACTTAGAGTTTAGATTGATAGGCGA 2393 |||||||||| || ||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 2334 GACCAAGAAA-GAGTTAAATAACTTGACTGTGTGTACTTAGAGTT-AGATTGATAGGCAA 2391 Query 2394 GTTTTTTATGTTCTTTTGTGGCTTCTGATTTTGAATTTATATTTGGTTTT-A----AGTG 2448 |||| || |||||||||||||||||||||||||||||| ||||||| | | |||| Sbjct 2392 GTTTG--ATCTTCTTTTGTGGCTTCTGATTTTGAATTTATTTTTGGTTATGATTTTAGTG 2449 Query 2449 ACAATAATATCTCTGGGCT 2467 ||||| ||||||||||||| Sbjct 2450 ACAATTATATCTCTGGGCT 2468 > AT4G37250.1 | Symbols: | Leucine-rich repeat protein kinase family protein | chr4:17527650-17530506 REVERSE LENGTH=2761 Length=2761 Score = 246 bits (133), Expect = 7e-64 Identities = 410/539 (76%), Gaps = 37/539 (7%) Strand=Plus/Plus Query 1387 AGAGAAAGA-ACTTGAAATCGAAACGCTTCTCAAAGCTTCAGCTTATATTTTGGGAGCCA 1445 |||||| || | | || || || || || || || ||||||||||||||||| ||||||| Sbjct 1629 AGAGAAGGAGA-TGGAGATTGAGACTCTGCTTAAGGCTTCAGCTTATATTTTAGGAGCCA 1687 Query 1446 CCGGTTCGAGCATAATGTATAAAGCGGTTCTTCAAGACGGAACGGCTGTGGCGGTTCGAC 1505 | |||||||| |||||||||||||| |||||| ||||||| | || | | |||||||| | Sbjct 1688 CAGGTTCGAGTATAATGTATAAAGCCGTTCTTGAAGACGGTAGGGTTTTCGCGGTTCGTC 1747 Query 1506 GTA-TAGCTGAATGCGG--T-T-T-AG-ACCGGTTT-AGAGATTTCGAAG-CTCAGGTTC 1556 | | | | |||| ||| | | | || ||||||| || ||||| | || | || ||| Sbjct 1748 G-ACTCGGTGAAAACGGTTTATCTCAGCGCCGGTTTAAG-GATTTTG-AGCCGCACATTC 1804 Query 1557 GAGCC-GTGGCTAAGTTAATACATCAAAACCTGG-TACGAATTCGAGGTTTCTATTGGGG 1614 ||||| ||| || || | || | || ||| || || || | || ||||||||||| Sbjct 1805 GAGCCATTGG-GAAATTGGTTCACCCGAATTTGGTTA-GACTTTGTGGGTTCTATTGGGG 1862 Query 1615 -AGCCGACGAGAAGCTTGTCATTTACGATTTTGTCCCTAACGGCAGCCTCG-CTAATGCC 1672 | |||||||||| || |||||||||||||||||||||||||||||||||| | || || Sbjct 1863 TA-CCGACGAGAAACTAGTCATTTACGATTTTGTCCCTAACGGCAGCCTCGTC-AACCCC 1920 Query 1673 CGTTACCGGAAAGT-GG-GC-TCCTCT-C-CT-TGTCATTTACCTTGGGAAGCTCGGCTC 1726 |||||||| |||| || | || ||| | | | ||| |||| |||||| |||||||| Sbjct 1921 CGTTACCGAAAAGGAGGAGGGTCTTCTTCACCGTATCACCTACCGTGGGAAACTCGGCTC 1980 Query 1727 AAGATAGCAAAAGGTATAGCCCGTGGGCTAACATATGTACACGACAAGAAGTACGTGCAT 1786 ||||||||||| || || || |||||||| | ||| | ||||| |||||| | |||||| Sbjct 1981 AAGATAGCAAAGGGCATTGCACGTGGGCTGGCTTATCTCCACGAGAAGAAGCATGTGCAT 2040 Query 1787 GGTAACCTCAAGCCTAGTAATATCCTTTTGGGCT-TAGATATGGAGCCTAAAGTTGCCGA 1845 || ||| | |||||||| || || ||||||||| | || ||||| || ||| | | ||| Sbjct 2041 GGAAACTTGAAGCCTAGCAACATACTTTTGGGCCAT-GACATGGAACCCAAAATAGGCGA 2099 Query 1846 TTTCGGGCTTGAGAAG-CTT-TTGATTGGCGACATGAGTTATA---GAGCTGGTGGATC 1899 |||||| || || ||| ||| || | ||||| | || || | ||||||||||||| Sbjct 2100 TTTCGGACTCGA-AAGGCTTCTT-ACAGGCGAAACAAGCTACATTCGAGCTGGTGGATC 2156 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 122407340920 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5