BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496873
Length=1240
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67270.1 | Symbols: ATEB1C, EB1C, ATEB1H1 | end binding prot... 1742 0.0
> AT5G67270.1 | Symbols: ATEB1C, EB1C, ATEB1H1 | end binding protein
1C | chr5:26840070-26842081 REVERSE LENGTH=1265
Length=1265
Score = 1742 bits (943), Expect = 0.0
Identities = 1165/1264 (92%), Gaps = 47/1264 (4%)
Strand=Plus/Plus
Query 1 ATTTTCTATCTTTGTTCTCTTCTCCTAATTTCAAAAGAGCCGTTagagagagagagaTCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATTTTCTATCTTTGTTCTCTTCTCCTAATTTCAAAAGAGCCGTTAGAGAGAGACAGATCG 60
Query 61 TGAAAGAGCCAGAGGGAGAAACAGTTGAATCTGAGAAAATCGAAGATGGCTACGAAGATT 120
|||||| |||||| ||||||| |||||||||||||||||||||||||| |||
Sbjct 61 AGAAAGAACCAGAGAGAGAAAC--------CTGAGAAAATCGAAGATGGCTACGAACATT 112
Query 121 GGGATGATGGATTCTGCATATTTCGTCGGGAGATCGGAGATTCTGGCCTGGATTAACTCC 180
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 113 GGGATGATGGATTCTGCATATTTCGTCGGGAGATCGGAGATTCTGGCTTGGATTAACTCT 172
Query 181 ACTCTCCAACTCAATCTCTCCAAAGTTGAAGAGGCTTGTTCAGGCGCTGTTCATTGTCAG 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 173 ACTCTCCAACTCAATCTCTCCAAAGTCGAAGAGGCTTGTTCAGGCGCTGTTCATTGTCAG 232
Query 241 CTCATGGATTCGGTACATCCTGGAACTGTTCCGATGCATAAGGTTAACTTTGATGCCAAG 300
|| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 233 CTGATGGATTCGGTGCATCCTGGGACTGTTCCGATGCACAAGGTTAACTTTGATGCGAAG 292
Query 301 AGTGAGTATGAGATGATTCAGAACTATAAGGTTCTTCAGGATGTGTTTAATAAGCTCAAG 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 293 AGTGAATATGAGATGATTCAGAACTATAAGGTTCTTCAGGATGTGTTTAATAAACTCAAG 352
Query 361 ATCACTAAGCACATTGAAGTGAGCAAACTCGTTAAGGGAAGGCCATTGGATAACTTGGAG 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 ATCACTAAGCACATCGAAGTGAGCAAACTCGTTAAGGGAAGGCCATTGGATAACTTGGAG 412
Query 421 TTTATGCAATGGATGAAGAAGTACTGTGATTCTGTTAATGGAGGCCAGCATAATTACCAC 480
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TTTATGCAGTGGATGAAAAAGTACTGTGATTCTGTTAATGGAGGCCAGCATAATTACCAT 472
Query 481 GCACTTGAGAGAAGAGAAGCCAGCAAAGGAGGTAAAGAAGCAACCAAGAGAGCTGCAGCA 540
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 473 GCACTTGAGAGAAGGGAAGCCAGCAAAGGAGGTAAAGAAGCAACGAAGAGAGCT---GCA 529
Query 541 GCTACACAACAATCAGGCAAGGGTTCTTCTTCTTCAGCTGCACCTAGACCTTCATCTTCA 600
||||||||||||||||||||| |||| |||||||||||| ||||| ||||||||||||||
Sbjct 530 GCTACACAACAATCAGGCAAGAGTTCGTCTTCTTCAGCTCCACCTCGACCTTCATCTTCA 589
Query 601 AATGGAACCCGTAAACAT--G----AA--C--C-ACA---GT-C-CTCCA----AC-ACT 639
|||||||||||||| ||| | || | | ||| || | | ||| | |||
Sbjct 590 AATGGAACCCGTAAGCATGAGCCACAATCCAACAACACCGGTACTCACCATTCTTCAACT 649
Query 640 GGGAATCACCACCACTCTTCAAAACCATCAGCTAAACAATCTAAACCAGTGCCTGCTTAT 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 GGGAATCACCACCACTCTTCAAAACCATCAGCTAAACAATCTAAACCAGTGCCTGCTTAT 709
Query 700 GATGAAAAGATCACAGAACTGAAACTCTACATAGACAGCTTGGAGAAAGAGAGAGATTTC 759
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 710 GATGAAAAGATCACAGAACTGAAACTTTACATTGACAGCTTAGAGAAAGAGAGAGATTTC 769
Query 760 TATTTCTCTAAACTCCGAGATGTAGAGATTCTCTGCCAAAACCCAGACACAGAGCACTTA 819
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 770 TATTTCTCTAAACTCAGAGATGTAGAGATTCTCTGTCAAAACCCAGACACAGAGCACTTA 829
Query 820 CCTCTTGTTGGTTCCATAAAAAGAATCCTATATGCAGCAGATGGAGAAGACGTTGGAGCA 879
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 830 CCTCTTGTTGGTTCCATAAAAAGAATCCTATACGCAGCAGATGGAGAAGACGTTGGAGCA 889
Query 880 GCAGCAGAACCAATACAGACTTTGAGTCCCATTGCTGAAGGATCAGAAGAAAGAAGGAAC 939
|||| ||| | | ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 890 GCAG-AGA-C-A---CAGACTTTGAGTCCCATTGCTGAAGGATCAGAAGAGAGAAGGAAC 943
Query 940 AGTGTAATAGAGTCACAGAAGAGGAAGCTCATAGTGAATCTCGACGTCGATGCTGCAGCG 999
||||||| |||||| |||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 944 AGTGTAACAGAGTCGCAGAAGAGGAAGCTCATAGTGAATCTCGACGTAGATGTTGCAGCG 1003
Query 1000 ATTACAACACTCTCTCCGAGACAACGCCTTTCTGATGCTTCTGATGTCAAATGCAGTGGT 1059
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 ATTACAACACTCTCTCCAAGACAACGCCTTTCTGATGCTTCTGATGTCAAATGCAGTGGT 1063
Query 1060 TCATCTCCTCTCTTGACCTACTGAAATGAGAGTTAACTACTTACTATAATACTCTCTTAT 1119
||||||||||||||||||| ||||||| ||||||| ||| | | || | |||||||||||
Sbjct 1064 TCATCTCCTCTCTTGACCTGCTGAAATCAGAGTTAGCTA-T-A-TA-A-TACTCTCTTAT 1118
Query 1120 AAAAAGATTCTCTCTCAGAGAATTTGCTCTATGTTTGAAAAAGATTCCCTGA-CCCTTCT 1178
|||| ||||||||||||||||| || ||||||||||||||| ||||||| | |||| ||
Sbjct 1119 GAAAACATTCTCTCTCAGAGAATCTGTTCTATGTTTGAAAAAAATTCCCT-ATCCCTCCT 1177
Query 1179 TATAAACATAGT--ACTAATACTCTGTTGAAAATATCATTGTTGTGATGTTTTGTGATCC 1236
|||||||||| | |||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1178 TATAAACATACTCTACTAGTACTCTGTTGAAAATATCATTGTTGTGATGTTTTGTGGTCC 1237
Query 1237 TTAT 1240
||||
Sbjct 1238 TTAT 1241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60943461630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5