BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496876
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67230.1 | Symbols: IRX14-L, I14H | Nucleotide-diphospho-sug... 1321 0.0
AT4G36890.1 | Symbols: IRX14 | Nucleotide-diphospho-sugar trans... 318 9e-86
> AT5G67230.1 | Symbols: IRX14-L, I14H | Nucleotide-diphospho-sugar
transferases superfamily protein | chr5:26822478-26824328
FORWARD LENGTH=1654
Length=1654
Score = 1321 bits (715), Expect = 0.0
Identities = 773/801 (97%), Gaps = 4/801 (0%)
Strand=Plus/Plus
Query 1 agaaggaa-gaagaagaagaagaagatgaagCTCTCTGTGTTTCGATTGAGCTATTGGAA 59
|||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 5 AGAA-GAAGGAAGAAGAAGAAGACGATGAAGCTCTCTGTGTTTCGATTGAGCTATTGGAA 63
Query 60 CCGTCGAGGAAGCAGTTTCCGATCATCGCCTTCGTTGGATCCCA-CATTCGACGGCAAAT 118
|||||||||||| |||||| |||||||||| ||||||||| ||| ||||||| |||||||
Sbjct 64 CCGTCGAGGAAGTAGTTTCAGATCATCGCCGTCGTTGGAT-CCATCATTCGATGGCAAAT 122
Query 119 CTCCGTCGTCTGTGTTTTGGTTCGTCATTCATGGTCTCTGCTGCTTGATCAGCTTGATTT 178
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 123 CTCCGTCGTCTGTGTTTTGGTTCGTGATTCATGGTCTCTGCTGCTTGATCAGCTTGATTC 182
Query 179 TAGGGTTCCGATTCAGCCATTTAGTACTCTTCTTCCTCTTCTCGACTTCCGTCACCAATC 238
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 183 TAGGGTTCCGATTCAGCCATTTAGTACTCTTCTTCCTTTTCTCGACTTCCGTCACCAATC 242
Query 239 TATACACAACGCCTTTTCTCTCCGCCGGAAGCGGCGGTGTAAGCCAGCTTCTCCGGCTAA 298
||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 243 TATACACAACGCCATTTCTCTTTGCCGGAAACGGCGGTGTAAGCCAGCTTCTCCGGCTAA 302
Query 299 AACCTCTAGAAACAGCAACTAACAGCACGGTGAAGAAGAACTCTCGAGTGGTGGTTGGAA 358
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 AACCTCTGGAAACAGCGACTAACAGCACGGTGAAGAAGAACTCTCGAGTGGTGGTTGGAA 362
Query 359 GACACGGGATCCGGATCCGTCCATGGCCTCACCCGAATCCGATTGAGGTCTTGAGAGCTC 418
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 363 GACACGGGATCCGGATCCGTCCATGGCCTCACCCGAATCCGATTGAGGTATTGAGAGCTC 422
Query 419 ATCAGTTGCTTGTGAGAGTACAGAAAGAGCAGAAATCGATGTACGGTGTGAGGAGCCCTA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 ATCAGTTGCTTGTGAGAGTACAGAAAGAGCAGAAATCGATGTACGGTGTGAGGAGCCCTA 482
Query 479 AGACTGTGATTGTGGTGACGCCGACTTATGTACGGACTTTCCAGGCGCTTCATTTGACCG 538
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 483 GGACTGTGATTGTGGTGACGCCGACTTATGTACGGACTTTTCAGGCGCTTCATTTGACCG 542
Query 539 GAGTTATGCACTCGCTTATGCTTGTTCCTTACGATTTGGTTTGGATCGTTGTGGAAGCTG 598
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 543 GAGTTATGCACTCGCTTATGCTTGTTCCGTACGATTTGGTTTGGATCGTTGTGGAAGCTG 602
Query 599 GTGGAATCACCAACGAGACTGCTTCGTTTATCGCAAAATCAGGATTGAAGACGATTCACT 658
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 603 GTGGAATCACTAACGAGACTGCTTCGTTTATCGCAAAATCAGGATTAAAGACGATTCACT 662
Query 659 TAGGATTCGATCAGAAAATGCCTAATACTTGGGAAGATCGTCACAAATTGGAGACCAAAA 718
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 663 TAGGATTCGATCAGAAAATGCCTAATACATGGGAAGATCGTCACAAATTGGAGACCAAAA 722
Query 719 TGAGACTTCACGCCTTGAGAATCGTGAGAGAGAAGAAGTTAGATGGGATTCTTATGTTTG 778
|||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct 723 TGAGACTTCACGCCTTGAGAGTTGTGAGAGAGAAGAAGTTAGATGGGATTGTTATGTTTG 782
Query 779 CTGATGATAGCAATATGCATA 799
|||||||||||||||||||||
Sbjct 783 CTGATGATAGCAATATGCATA 803
Score = 1051 bits (569), Expect = 0.0
Identities = 709/776 (91%), Gaps = 11/776 (1%)
Strand=Plus/Plus
Query 793 ATGCATAATGAATTATCGTCGGTCTTGAAGAAAGAAGAAGGGAAGCGTAAAGAGAAACCT 852
||||| |||||||||| ||| |||||||||| ||| |||||||| ||||||||||||
Sbjct 882 ATGCA-GATGAATTATCATCGATCTTGAAGAATGAACAAGGGAAGAACAAAGAGAAACCT 940
Query 853 TCAATGCCAATCCAAGGTCCTAGTTGTAATTCCTCTGAGAAATTAGTGGGCTGGCACATT 912
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 941 TCAATGCCAATCCAAGGTCCTAGTTGTAATTCCTCTGAGAAATTAGTGGGTTGGCACATT 1000
Query 913 TTCAACACTCAACCTTATGCCAAGAAGACTGCGGTTTATATCGATGAGAAAGCGGCTGTG 972
|||||||| || |||||||||||||||||||| || |||||||||||||||||| |||||
Sbjct 1001 TTCAACACACAGCCTTATGCCAAGAAGACTGCAGTGTATATCGATGAGAAAGCGCCTGTG 1060
Query 973 ATGCCTATTAAGATGGAATGGTCAGGGTTTGTGTTGAATTCTAGGTTGCTTTGGAAGGAA 1032
||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1061 ATGCCTAGTAAGATGGAATGGTCAGGGTTTGTGTTGAATTCTAGATTGCTCTGGAAGGAA 1120
Query 1033 TCTGTAGATGAGAAACCGGCATGGATTAAAGATCTCAGCTTGTTGGATGATA---ACGAG 1089
||| ||||||| ||||| |||||| |||||||||||||||||||||||||| | | |
Sbjct 1121 TCTTTAGATGATAAACCAGCATGGGTTAAAGATCTCAGCTTGTTGGATGATGGTTATGCG 1180
Query 1090 GAAATTGACAGTCCATTATCTCTGGTCAAGGATCCTTCCATGCTGGAGCCACTTGGAAGC 1149
|||||||| ||||| || ||| |||| ||||||||||||||| |||||||||||||||||
Sbjct 1181 GAAATTGAGAGTCCTTTGTCTTTGGTGAAGGATCCTTCCATGGTGGAGCCACTTGGAAGC 1240
Query 1150 TGTGGCCGCCGTGTCTTGCTTTGGTGGCTTCGTGTTGAAGCTCGAGCTGATAGCAAATTC 1209
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1241 TGTGGCCGTCGTGTCTTGCTTTGGTGGCTTCGAGTTGAAGCTCGAGCTGATAGCAAATTC 1300
Query 1210 CCACCTGGCTGGATCATAAAGTCGCCTTTGGAAATCACAGTACCATCAAAGCGGACACCT 1269
||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 1301 CCACCTGGCTGGATCATAAAGTCACCTTTAGAAATCACAGTGCCATCAAAGCGGACACCC 1360
Query 1270 TGGCCAGACTCTTCCTCAGAGCTCCCAGCGGCG---ATCAAAGAAGCAAAAAGCGACACT 1326
||||||||||||||||||||||||||||||||| |||||||| ||||||||| || ||
Sbjct 1361 TGGCCAGACTCTTCCTCAGAGCTCCCAGCGGCGGCGATCAAAGAGGCAAAAAGCAACTCT 1420
Query 1327 AAGCCAAGAG-GATCAAATAGCAAGAGCTCGAAAGG-GAAACAAGAACCGAAAGCTTTCA 1384
|||||||||| | || || |||||||||| || || |||||||||||| |||||||||
Sbjct 1421 AAGCCAAGAGTG-TCGAAGAGCAAGAGCTATAA-GGAGAAACAAGAACCTAAAGCTTTCG 1478
Query 1385 ATGGTGTCAAAGTATCAACAACTAGTTGAAGAAGCTTCTATAAATAGATCGAGTTTCATT 1444
||||||||||||| ||| ||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1479 ATGGTGTCAAAGTGTCAGCAACTAGCTGAAGAAGCTTCTATAGATAGATCGAGTTTCATT 1538
Query 1445 TCATATTCTTTTTCACAGTATATATCGGAAAATTGTTTGGTGTGCATTAGCTTCATTGTA 1504
|||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1539 TCATATTCTTTTTCACCGTAAATATCGGAAAATTGTTTTGTGTGCATTAGCTTCATTGTA 1598
Query 1505 TACAATACAAAAATCATATGGGATGTTTTGATTTCTTCAAATCGATACTTAGCTCT 1560
|||| ||||||||||||||| |||||||| | ||||||||||||||||||||||||
Sbjct 1599 TACAGTACAAAAATCATATGAGATGTTTTAAGTTCTTCAAATCGATACTTAGCTCT 1654
> AT4G36890.1 | Symbols: IRX14 | Nucleotide-diphospho-sugar transferases
superfamily protein | chr4:17379175-17381780 REVERSE
LENGTH=2187
Length=2187
Score = 318 bits (172), Expect = 9e-86
Identities = 391/492 (79%), Gaps = 34/492 (7%)
Strand=Plus/Plus
Query 325 ACGGTGAAGAAGAA-CTCTCGAGTGGTGGTTGGAAGACACGGGATCCGGATCCGTCCATG 383
|||| || ||| || |||||| || || ||||||||||||||||||||||||||||| ||
Sbjct 478 ACGGCGACGAA-AAGCTCTCGTGTTGTTGTTGGAAGACACGGGATCCGGATCCGTCCTTG 536
Query 384 GCCTCACCCGAATCC-GATTGAGGTCTTGAGAGCTCATCAGTTGC-TTGTGAGAGTACAG 441
||| || |||||||| | ||||||| ||| |||||||||| | | ||| |||||| ||
Sbjct 537 GCCGCATCCGAATCCCG-TTGAGGTAATGAAAGCTCATCAGAT-CATTGGGAGAGTTCAA 594
Query 442 AAAGAGCAGAA-ATCGATGTACGGTG-TGAGGAGCCCTAAGACTG-TGATTG-TGGTGAC 497
|||||||| || || ||| | || | ||| || ||||| || | || | || ||||
Sbjct 595 AAAGAGCAAAAGAT-GATCTTTGG-GATGAAAAGTAGTAAGA-TGGTTATAGCTG-TGAC 650
Query 498 GCCGACTTATGT-ACGGACTTTCCAGGCGCTT-CATTTGACCGGAGTTATGCACTCGCTT 555
||||||||||| | ||||||| || || || |||||||| || || ||||| || ||
Sbjct 651 ACCGACTTATGTGA-GGACTTTTCAAGCT-TTGCATTTGACTGGTGTGATGCATTCT-TT 707
Query 556 -ATGCTTGTTCCTTACGATTTGGTTTGGATCGTTGTGGAAGCTGGTGGAA-TCACCAACG 613
|||||||||||||| ||| |||||||||||||||| ||||||||||| | || || |
Sbjct 708 GATGCTTGTTCCTTATGATCTGGTTTGGATCGTTGTTGAAGCTGGTGGTGCT-ACTAATG 766
Query 614 AGACTGCTTCGTTTATCGCAAAATCAGGA-TTGAAGACGATTCAC-TTAGGATTCGATCA 671
|||| | || | |||| |||||||||||| || | ||| ||||| || ||||| |||||
Sbjct 767 AGACCGGTTTGATTATTGCAAAATCAGGACTT-AGGACCATTCATGTTGGGATT-GATCA 824
Query 672 GAAAATGCCTAATACTTGGGAAGATCGTCAC-AAATTGGA-GACCAAAATGAGACTTCAC 729
|| ||||||||||||||||||||||||| | ||||| || | | | ||||||||||
Sbjct 825 GAGAATGCCTAATACTTGGGAAGATCGT-AGTAAATTAGAAGTCTTTA-TGAGACTTCAA 882
Query 730 GCCTTGAGAATCGTGAGAGA-GAAGAAG-TTAGATGGGATTCTTATGTTTGCTGATGATA 787
|| |||||| | ||||| || || |||| || ||||||||| | |||||||| |||||||
Sbjct 883 GCTTTGAGAGTTGTGAGGGAAGA-GAAGCTT-GATGGGATTGTGATGTTTGCGGATGATA 940
Query 788 GCAATATGCATA 799
| ||||||||||
Sbjct 941 GTAATATGCATA 952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77007636030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5