BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496878
Length=1199
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67210.1 | Symbols: | Protein of unknown function (DUF579) ... 1855 0.0
AT3G50220.1 | Symbols: | Protein of unknown function (DUF579) ... 811 0.0
AT5G67220.1 | Symbols: | FMN-linked oxidoreductases superfamil... 58.4 2e-07
> AT5G67210.1 | Symbols: | Protein of unknown function (DUF579)
| chr5:26818949-26820157 FORWARD LENGTH=1209
Length=1209
Score = 1855 bits (1004), Expect = 0.0
Identities = 1142/1207 (95%), Gaps = 15/1207 (1%)
Strand=Plus/Plus
Query 1 TTTGTTTTTAAAAACAGAGTCATCCTCTTCGTCTTATTTCTCTGACCAAAACAGAG-G-- 57
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 4 TTTGTTTTT-AAAACAGAGTCATCCTCTTCGTCTTCTTTCTCTGACCAAAACAGAGCGAA 62
Query 58 AAGCAAAAATGAAAAGTGGAGGGAACACAAACACGAAGCTCATACTTGTTCATCCATACA 117
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 63 AAGCAAAAATGAAAAGTGGAGGGAACACAAACACTAAACTCATACTTGTTCATCCATACA 122
Query 118 TTCAAAAACAAACAAGCACAAATCGTCTATGGCTTCTCGCTTTCGTCTCTTTCTTCACAA 177
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 123 TTCAAAAGCAAACAAGCACAAATCGTCTATGGCTTCTCGCTTTCGTTTCTTTCTTCACAA 182
Query 178 TCGCTTTTCTCTTAACTCTTCTCTACACCACCGACTCTATCATCCCTTCTAAAAACAACT 237
||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 183 TCGCTTTTCTCCTAACTCTTCTCTACACCACCGACTCCATCATCTCTTCTAAAAACAACT 242
Query 238 CCGCCACCGTCTCCTCCGCCGTCAACTCCGCCGTCTCCACCGCT-CCGATCACTCAGTTG 296
||||||||||||||||||||||||| || |||||| |||||||| || ||| |||||||
Sbjct 243 CCGCCACCGTCTCCTCCGCCGTCAATTCTGCCGTCACCACCGCTACC-ATCTCTCAGTTA 301
Query 297 CCAACAGCAGTCATCAATGCAATGCTTCACTACGCGTCGAGATCTAACGACAGCTTCCAC 356
|||||| ||| |||||||||||||||||||||||| || ||||| |||||||||| ||||
Sbjct 302 CCAACAACAGCCATCAATGCAATGCTTCACTACGCTTCAAGATCAAACGACAGCTACCAC 361
Query 357 ATGTCATACGGAGAGATGAAATCAATCTCCGACGTCCTCCGCCGCTGCTCTCCGCCGTGT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 ATGTCATACGGAGAGATGAAATCAATCTCCGACGTCCTCCGCCGCTGCTCTCCGCCGTGT 421
Query 417 AATCTCCTGGTCTTCGGCCTAACACACGAAACCCTTCTCTGGAAATCGCTAAACCACAAC 476
|||||| | |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 422 AATCTCTTAGTCTTCGGTCTTACACACGAAACCCTTCTCTGGAAATCGCTAAACCACAAC 481
Query 477 GGACGTACGGTTTTCATCGAAGAGAATCGTTACTACGCAGCTTACTTCGAAGAAATCCAC 536
|| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 482 GGGCGTACAGTTTTCATCGAAGAGAATCGTTACTACGCTGCTTACTTCGAAGAAATCCAC 541
Query 537 CCGGAGATCGAAGTCTTCGATGTTCAGTACACGACGAAAGCACGTGAGGCGCGTGAGCTA 596
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 542 CCGGAGATCGAAGTCTTCGATGTTCAGTACACGACCAAAGCTCGTGAGGCGCGTGAGCTT 601
Query 597 GTGTCGGCGGTTAAAGAAGCGGCGACGAACGAGTGTCGTCCGGTGCAGAATCTTCTCTTC 656
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 602 GTGTCGGCGGTTAAAGAAGCGGCGAGGAACGAGTGTCGTCCAGTGCAGAATCTTCTCTTT 661
Query 657 TCCGATTGTAAATTAGGACTCAATGATTTGCCGAATCATGTATACGATGTTGACTGGGAT 716
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 662 TCAGATTGTAAATTAGGACTCAATGATTTGCCGAATCATGTATACGATGTTGATTGGGAT 721
Query 717 GTGATCTTAGTTGATGGACCACGTGGCGACGGTGGAGATGTACCGGGAAGGATGTCGTCG 776
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 722 GTGATCTTAGTTGATGGACCACGTGGCGACGGTGGAGATGTACCGGGGAGGATGTCGTCG 781
Query 777 ATTTTCACGGCGGCGGTTCTTGCTCGGAGTAAAAAAGGCGGGAATCCGAAGACGCATGTG 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 ATTTTCACGGCGGCGGTTCTTGCTCGGAGTAAAAAAGGCGGGAATCCGAAGACGCATGTG 841
Query 837 TTTGTTCATGATTATTACAGAGATGTTGAGAGACTTTGCGGCGATGAGTTTCTTTGCCGG 896
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 842 TTTGTTCATGATTATTACAGAGATGTTGAGAGACTTTGTGGGGATGAGTTTCTTTGCCGG 901
Query 897 GAGAATCTTGTGGAGTCTAACGATATGCTTGCGCACTACGTGTTGGAGAGGATGGATAAA 956
|||||||||||||| ||||| ||| |||||||||||||||||||||||| ||||||||||
Sbjct 902 GAGAATCTTGTGGAATCTAATGATCTGCTTGCGCACTACGTGTTGGAGAAGATGGATAAA 961
Query 957 AACAGCACGCAGTTCTGTCGTGGTCGTAAGAA-A--CGCTCTGTTTCTTCTCCATCGGCT 1013
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 962 AACAGCACGCAGTTCTGTCGTGGTCGTAAGAAGAAACGCTCTGTTTCTTCTCCATCGGCT 1021
Query 1014 TGAGTAAAATGTGCGCTAAAATCTTGTGGGACTGTGGAGAGTCAAATCAACCGACACAAC 1073
||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||| ||
Sbjct 1022 TGAGTTAAATGTGCGCTAAAATCTTGTGG-ACTGTGGAGAGTCAAACCAACCGACACGAC 1080
Query 1074 GGTGGTCATTAACACCGTCAATCGCGGA-GGAGTTTGTGTAACATAAATACttttttttt 1132
|||||||||| ||||||||||||||||| ||||||||||||| |||| ||| |||||
Sbjct 1081 GGTGGTCATTGACACCGTCAATCGCGGAAGGAGTTTGTGTAAAATAA-TACGTTTTT--- 1136
Query 1133 CTACCTTTAAATATTTTTTCCTGCAATTTAAACTACGTGAAAATTCAATCAGATCAATTA 1192
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1137 CTACCTTTAAATATTTTTTCCTGCTTTTTAAACTATGTGAAAATTCAATCAGATCAATTA 1196
Query 1193 AAATTTC 1199
|||||||
Sbjct 1197 AAATTTC 1203
> AT3G50220.1 | Symbols: | Protein of unknown function (DUF579)
| chr3:18617424-18618729 REVERSE LENGTH=1306
Length=1306
Score = 811 bits (439), Expect = 0.0
Identities = 792/958 (83%), Gaps = 42/958 (4%)
Strand=Plus/Plus
Query 77 AGGGAACACAAACACGAAGCTCATACTTGTTCATCCATACATTCAAAAACAAACAAGCAC 136
||||||||| ||||| || || || ||| ||||||| ||||| ||||||||||| |||||
Sbjct 104 AGGGAACACGAACACAAAACTAATCCTTCTTCATCCTTACATCCAAAAACAAACGAGCAC 163
Query 137 AAATCGTCTATGGCTTCTCGCTTTCGTCTCTTTCTTCACAATCGCTTTTCTCTTAACTCT 196
| |||| ||||||||||||||||||||||||||||||| || | ||||||| | |||||
Sbjct 164 GACTCGTTTATGGCTTCTCGCTTTCGTCTCTTTCTTCACCATAGTTTTTCTCCTCACTCT 223
Query 197 TCTCTACACCACCGACTCTATCATCCCTTCTAAAAACAACT-C--CG-C-CA-CCGTCTC 250
||||||||| | ||| | | |||||||| ||||||| || | || | || ||||
Sbjct 224 TCTCTACACTAGAGACAC-A--ATCCCTTCCAAAAACACCTCCGTCGCCGCAGCCGT-AG 279
Query 251 CT-CCGCCGTCA----A--CT-C-CGCCGTCTCCA-CCGCTCCGA--T-C-ACT-C-AGT 294
|| | | ||||| | | | | || || || | |||| | | | ||| | | |
Sbjct 280 CTGCAGTCGTCACCGGAGGATCCACACCTTCAGCATCATCTCCCATCTCCAACTCCAACT 339
Query 295 TGCCAACAGCAGT-C-ATCAATGCAATGCTTCACTACGCGTCGAGATCTAACGACAGCTT 352
| ||||| ||| | ||||| || |||||||||||||||| ||||| ||||| || ||
Sbjct 340 TACCAAC--TAGTGCAATCAACGCTTTGCTTCACTACGCGTCAAGATCCAACGATAGTTT 397
Query 353 CCACATGTCATACGGAGAGATGAAATCAATCTCCGACGTCCTCCGCCGCTGCTCTCCGCC 412
||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| ||
Sbjct 398 CCACATGTCTTACGGAGAGATGAAATCAATCTCTGACGTCCTCCGCCGCTGCGCTCCACC 457
Query 413 GTGTAATCTCCTGGTCTTCGGCCTAACACACGAAACCCTTCTCTGGAAATCGCTAAACCA 472
||||||||| || || ||||| || |||||||| || || || ||||| ||| |||||||
Sbjct 458 GTGTAATCTTCTCGTTTTCGGACTCACACACGAGACTCTCCTTTGGAAGTCGTTAAACCA 517
Query 473 CAACGG-ACGTACGGTTTTCATCGAAGAGAATCGTTACTACGCAGCTTACTTCGAAGAAA 531
|||||| | | || || |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 518 CAACGGTA-GAACAGTGTTCATCGAGGAGAATCGTTACTACGCGGCTTACTTCGAAGAAA 576
Query 532 TCCACCCGGAGATCGAAGTCTTCGATGTTCAGTACACGACGAAAGCACGTGAGGC-GCGT 590
|||||||||||||||| || ||||| ||||| |||||||| ||||| | || || | |
Sbjct 577 TCCACCCGGAGATCGACGTTTTCGACGTTCAATACACGACAAAAGCTCACGAAGCTG-GA 635
Query 591 GAGCTAGTGTCGGCGGTTAAAGAAGCGGCGACG-AACGAGTGTCGTCCGGTGCAGAATCT 649
||||| || | |||| ||||||||| ||| | |||||||||||||| ||||| |||||
Sbjct 636 GAGCTCGTCACCGCGGCTAAAGAAGCCGCG-GGAAACGAGTGTCGTCCTGTGCAAAATCT 694
Query 650 TCTCTTCTCCGATTGTAAATTAGGACTCAATGATTTGCCGAATCATGTATACGATGTTGA 709
||||||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 695 TCTCTTCTCAGATTGTAAATTAGGTCTCAATGATTTGCCTAATCATGTCTACGATGTTGA 754
Query 710 CTGGGATGTGATCTTAGTTGATGGACCACGTGGCGACGGTGGA-GATGTACCGGGAAGGA 768
|||||||| ||||| || || || ||||||||||| | | | || | |||||| ||||
Sbjct 755 TTGGGATGTAATCTTTGTGGACGGGCCACGTGGCGATGCT-CACGAAGGACCGGGGAGGA 813
Query 769 TGTCGTCGATTTTCACGGCGGCGGTTCTTGCTCGGAGTAAAAAAGGCGGGAATCCGAAGA 828
||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||
Sbjct 814 TGTCGTCGATTTTCACGGCGGCGGTTCTTGCTCGGAGCAAAAAGGGCGGGACTCCGAAGA 873
Query 829 CGCATGTGTTTGTTCATGATTATTACAGAGATGTTGAGAGACTTTGCGGCGATGAGTTTC 888
||||||||||||| ||||| ||||| ||||| |||||||| ||||| || |||||||| |
Sbjct 874 CGCATGTGTTTGTGCATGACTATTATAGAGACGTTGAGAGGCTTTGTGGTGATGAGTT-C 932
Query 889 TT-TGCCGGGAGAATCTTGTGGAGTCTAACGATATGCTTGCGCACTACGTGTTGGAGAGG 947
|| ||||| ||||||||||| |||||||| ||| ||||||| |||||||||||||| | |
Sbjct 933 TTGTGCCGAGAGAATCTTGTTGAGTCTAATGATTTGCTTGCACACTACGTGTTGGATAAG 992
Query 948 ATGGATAAAAACAGCACGCAGTTCTGTCG-TGGTCGTAAGAAACGCTCTGTTTCTTCT 1004
||||||||||||||||| |||| || | ||||||||||||||| || ||||| |||
Sbjct 993 ATGGATAAAAACAGCACAAAGTTTTG-CAATGGTCGTAAGAAACGTTCGGTTTCGTCT 1049
> AT5G67220.1 | Symbols: | FMN-linked oxidoreductases superfamily
protein | chr5:26820121-26821964 REVERSE LENGTH=1465
Length=1465
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Minus
Query 1169 GTGAAAATTCAATCAGATCAATTAAAATTTC 1199
|||||||||||||||||||||||||||||||
Sbjct 1465 GTGAAAATTCAATCAGATCAATTAAAATTTC 1435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58885239285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5