BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496882
Length=1358
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67170.1 | Symbols: | SEC-C motif-containing protein / OTU-... 1838 0.0
AT5G67180.1 | Symbols: TOE3 | target of early activation tagged... 117 3e-25
> AT5G67170.1 | Symbols: | SEC-C motif-containing protein / OTU-like
cysteine protease family protein | chr5:26799766-26802067
FORWARD LENGTH=1415
Length=1415
Score = 1838 bits (995), Expect = 0.0
Identities = 1233/1343 (92%), Gaps = 35/1343 (3%)
Strand=Plus/Plus
Query 42 TTTGATAATGGCGAAAACTAAGCAACAGAAATCTAAGCCTAAGAAACAACCGCATC---A 98
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 79 TTTGATAATGGCGAAAACTAAACAACAGAAATCTAAGCCTAAGAAACAACCGCATCAGAA 138
Query 99 GCAAGGAAAGGATTGTGATCTCTCTCAGTTTCGTGCTCAGCTTGACGCTTTAGGGCTTAA 158
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 139 GCAAGGAAAGGATTGTGATCTCTCTCAATTTCGTGCTCAGCTTGACGCTTTAGGGCTTAA 198
Query 159 GATTATCCAAGTGACTGCAGACGGTAATTGTTTCTTCAGAGCAATTGCTGATCAATTGGA 218
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 199 GATTATCCAAGTGACTGCTGACGGTAATTGTTTCTTCAGAGCAATTGCTGATCAATTAGA 258
Query 219 AGGCAATGAGGATGAACACAACAAGTACCGTAACATGGTTGTACAATATATAGTGAAAAA 278
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 259 AGGCAATGAGGATGAACACAACAAGTACCGTAACATGATTGTACTTTATATAGTGAAAAA 318
Query 279 TCGTGAAATGTTCGAGCCTTTTATCGAAGATGATGTTCCGTTTGAGGATTACTGTAAAAC 338
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 319 TCGTGAAATGTTCGAGCCTTTTATCGAAGATGATGTTCCTTTTGAGGATTACTGTAAAAC 378
Query 339 CATGGATGATGATGGCACTTGGGCTGGGAATATGGAATTACAGGCAGCTTCTCTTGTCAC 398
|||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 379 CATGGACGATGATGGAACTTGGGCTGGGAATATGGAATTACAAGCAGCTTCTCTTGTCAC 438
Query 399 ACGCAGTAATATATGTATTCACAGGAACATGTCACCGCGTTGGTATATACGCAATTTTGA 458
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 439 TCGCAGTAATATATGTATTCACAGGAACATGTCACCGCGTTGGTATATACGCAACTTTGA 498
Query 459 AGATACACGAACCCGCATGATCCATCTGTCTTACCACGATGGGGAACACTACAACAGTGT 518
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 499 AGATACGCGAACCCGCATGATCCATCTGTCTTACCATGATGGGGAACACTACAACAGTGT 558
Query 519 GCGTTCAAAGGAAGATGCTTGTGGAGGACCAGCCAGGCCTGTTGTAATAGAGGCTGATGC 578
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 GCGTTCCAAGGAAGATGCTTGTGGAGGACCAGCCAGGCCTGTTGTAATAGAGGCTGATGC 618
Query 579 TAAAGTTTCAGCAGCATCTAAACAAGCCAAAGCCACGGAGAGCAAGTCCAAAAACAAAGC 638
||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||
Sbjct 619 TAAAGTTTCAGCAGCATCTAAACAAGCGAAAGCTACAGAGAGCAAGTCCAAAAATAAAGC 678
Query 639 TGATAAGTGT-ATTGTGGATGCTGG-GACTATCAAAGTAGTCATGTCTGGTAGTTGTTGT 696
|||||||||| || ||| ||||||| | |||||||||| |||||||||||||||||||||
Sbjct 679 TGATAAGTGTCAT-GTGAATGCTGGAG-CTATCAAAGTTGTCATGTCTGGTAGTTGTTGT 736
Query 697 GGCAATGCTGAGAAAGCTGAACAGGTTCTAGTACAAGTAAACGGTGATGTAGATGCTGCA 756
| |||| ||||||||||||||||||||||| ||||||| || |||||||| ||||||||
Sbjct 737 GACAATACTGAGAAAGCTGAACAGGTTCTATTACAAGTTAATGGTGATGTGGATGCTGCT 796
Query 757 ATAGAATTCCTGATAGCAGAGCAAGGAATGGAGTCTTTGACTGAAAATGATTCAGAAATC 816
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
Sbjct 797 ATAGAATTCCTGATAGCAGACCAAGGAATGGAGTCTTTGACTGAAAATGATACAGAAACC 856
Query 817 GCTTCTGCAGCAGATAGCA-CAAATCCAATGGAAGCAAGTGATAGTTCAGTGGAAAGCAC 875
|| |||||| |||||| || ||| |||| | | |||||||||||| || |||||| |||
Sbjct 857 GCCTCTGCATCAGATACCATCAAC-CCAAAGCATGCAAGTGATAGTCCAATGGAAAACAC 915
Query 876 CGAGCAATCCAAAGAAGAATTGA-ATGAGAAGGAATCAGCTAGCTGCACTAATAATGAAA 934
||||||| ||| ||||||||||| | ||| |||||||||||||| ||| ||| | |||||
Sbjct 916 CGAGCAAGCCAGAGAAGAATTGATA-GAGGAGGAATCAGCTAGCGGCAATAACAGTGAAA 974
Query 935 CAGTCCATGCCAAGTGCAG-ATCACAGACCGATGATAAGAAGATCCCAAGGAATAAAACA 993
||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 975 CAGTCCAAGCCAAGTGCACTA-CACAGACCGATGATAAGAAGATCCCAAGGAATAAAACA 1033
Query 994 TGTCCATGTGGTTCAAAGAAGAAATACAAGTCCTGTTGTGGAACAGCAGCTGGGAGATCC 1053
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1034 TGTCCATGTGGTTCAAAGAAGAAATACAAGTCCTGCTGTGGAACAGCAACTGGGAGATCC 1093
Query 1054 TCTGTAAAACTGTTAGTGAGCCAAACAACGGAGTCGAAGAAGGGGAGAAAGAATTTGAGA 1113
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1094 TCTGTAAAACTGTTAGTGAGCCAAACAATGGAGTCGAAGAAGGGGAGAAAGAATTTGAGA 1153
Query 1114 AGAGGAACATCGAATGAAGTTGAAGCAAATGTACCAGATGTTGGTGCTCTTTGTATATAA 1173
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1154 AGAGGAACATCGAATGAAGTTGAAGCAAATGCACCAGATGTTGGTGCTCTTTGTATATAA 1213
Query 1174 T-AATTTTCACATAACAGATTGCTCAGGTATGTGATT-AGTATGAA-TTCCGAGTTAGGA 1230
| || | |||| | || | || || || ||| |||||||| || |||||||||
Sbjct 1214 TTAAGTCTCAC-TCACTCAAGGCGAAGACATAA-ATTTAGTATGAACTTG-GAGTTAGGA 1270
Query 1231 TCACTCGGGAATATACCTTTTT-GTTGTCTGATTAGATTAACAGAAAGAAAAATACT--- 1286
||||||| || ||||||||||| |||||||||||| ||||||||||||||||| |||
Sbjct 1271 TCACTCGCGAGTATACCTTTTTTGTTGTCTGATTAAATTAACAGAAAGAAAAAAACTTGT 1330
Query 1287 ----C-G-A-----GAACATATATGTATTACAGAGCCCAAAAATAGCTCGAGAAATAACT 1335
| | | |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1331 TATACCGTACTCAAGAACATATATGTATTACAGAGCCCAAAAATAGCTCGAGAA-TAACT 1389
Query 1336 CAAATTCTTTAAAGCATAGCTTG 1358
||||||| |||||||||| ||||
Sbjct 1390 CAAATTCATTAAAGCATAACTTG 1412
> AT5G67180.1 | Symbols: TOE3 | target of early activation tagged
(EAT) 3 | chr5:26801949-26804249 REVERSE LENGTH=1544
Length=1544
Score = 117 bits (63), Expect = 3e-25
Identities = 72/76 (95%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 1283 TACTCGAGAACATATATGTATTACAGAGCCCAAAAATAGCTCGAGAAATAACTCAAATTC 1342
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1503 TACTCAAGAACATATATGTATTACAGAGCCCAAAAATAGCTCGAGAA-TAACTCAAATTC 1445
Query 1343 TTTAAAGCATAGCTTG 1358
|||||||||| ||||
Sbjct 1444 ATTAAAGCATAACTTG 1429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66867125940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5