BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496884
Length=1351
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67160.1 | Symbols: EPS1 | HXXXD-type acyl-transferase famil... 1956 0.0
> AT5G67160.1 | Symbols: EPS1 | HXXXD-type acyl-transferase family
protein | chr5:26797613-26799041 REVERSE LENGTH=1429
Length=1429
Score = 1956 bits (1059), Expect = 0.0
Identities = 1263/1361 (93%), Gaps = 16/1361 (1%)
Strand=Plus/Plus
Query 2 CAAAACCTCACTGATTAAG-AAAAGGTAAAACGATGGAAGAAGAACTGGTGGTGATCTCG 60
||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||
Sbjct 5 CAAAACCTCACTGATTAAGAAAAAGGTAAAACGATGGAAGAAGAATTGGTGGTAATCTCG 64
Query 61 AAGAGTATCG-TAACTCCCAGAAACGTTAAGAAACCGACTTCTGTGAAGAAGATTCATCT 119
||||| || | ||| |||||||| | ||||||||||||||||||||||||||||||| ||
Sbjct 65 AAGAGCATAGTTAA-TCCCAGAAGCCTTAAGAAACCGACTTCTGTGAAGAAGATTCAGCT 123
Query 120 GACTCCATGGGATCTCTCTCGCCTTCGCTTTGGTTATCTTCAAAGAGGTCTTGTCTTTCC 179
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 124 GACTCCATGGGATCTCTCTCGCCTTCGTTTTGGTTATCTTCAAAGAGGTCTTCTCTTTCA 183
Query 180 CAAACCTGATCCCAAACAATTACAAGCTTCACTCTCTGTTGCACTTGATCGTTTCTATCC 239
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 CAAAATTGAAGTCAAACAATTACAAGCTTCACTCTCTGTTGCACTTGATCGTTTCTATCC 243
Query 240 TTTAGCTGGTCGTCTAGTGAAGCTAGCGAACGACGACGACACTGTCTCGTTTTTCATCAG 299
||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 244 TTTAGCTGGTCGTCTTGTGAAGCTAAAGAACGACGACGATACTGTCTCGTTTTTCATCAG 303
Query 300 CTGCGATGGTTCAGGTGTGGAGTTTGTTCACGCCA-TGGCTAAAAACATCGAGCTCAGTG 358
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 304 CTGCGATGGTTCAGGTGTGGAGTTTGTTCACGC-AGTGGCTAAAAACATCGAGCTCAGTG 362
Query 359 ATGTCCTTCAGTTATCCAGTTCTGTCCCCGGGGTCTTCGCTTCCTTTTTCCCTGCAACCG 418
|||||||| |||||||| |||||||||||||| | ||||||||||||||||||||||| |
Sbjct 363 ATGTCCTTGAGTTATCCGGTTCTGTCCCCGGGTTTTTCGCTTCCTTTTTCCCTGCAACGG 422
Query 419 GGATCAAGAACTACCACGGTGTCTCAAGATCTTTACTAATGGTTCAAGTGACCGAGATGA 478
|||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||
Sbjct 423 GGATCAAGAACTACCACGGTGTCTCAAGATCTCTACTTATGGTTCAAGTGACAGAGATGA 482
Query 479 AGGACGGGATTTTCATCGGTTTCGGTTATAACTCTACCGTGGCTGACGCCACTTCAATCT 538
|||||||| ||||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 483 AGGACGGGGTTTTCATCGGTTTTGGTTACAACTCTACCGTGGCTGATGCCACTTCAATCT 542
Query 539 GGAAGTTCATTAATGCATGGTCAGAGATTTGCTCGAAAGATTCG---GGATCCGAAACCT 595
|||||||||| |||||||||||||||||||||||||||||||| |||||| |||| |
Sbjct 543 GGAAGTTCATCAATGCATGGTCAGAGATTTGCTCGAAAGATTCTTCAGGATCCCAAACTT 602
Query 596 TCCAACGTTGTCTTCACCTTAAAGGTTGGTTCTTTGAT-AGGATAGATTATCCAATCCAT 654
|||||||| |||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 603 TCCAACGTCGTCTTCACCTTAAAGGTTGGTTCTTTGACGAG-ATTGATTATCCAATCCAT 661
Query 655 ATTCCAGACCCTGTAACAAAACCAACTAGCTATGTAACATCA--A-CCAATCTACAAGAG 711
||||||||||||| ||||||||||||||| ||||||||| || | ||||||||||||||
Sbjct 662 ATTCCAGACCCTGAAACAAAACCAACTAGTTATGTAACAACACCAACCAATCTACAAGAG 721
Query 712 AAGATGTTTCATATCACAAAGGAAAATGTTTTGAAACTGGAAGCTAAAGCCAACGACGAG 771
|||||||||||| | ||||| || |||||||||||||| || ||||||||||||||||||
Sbjct 722 AAGATGTTTCATGTTACAAAAGAGAATGTTTTGAAACTTGACGCTAAAGCCAACGACGAG 781
Query 772 GCTGATCAAAAGATCTCGTCTATCCAAGCGGTGTTGGCATATATATGGCGTTCAATGGTT 831
||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 782 GCTGATCAAAAGATCTCTTCTATTCAAGCGGTGTTAGCATATATATGGCGTTCAATGGTT 841
Query 832 AAACACAGTGGCATGAGCCAAGAAGAAGAGACTCATTGCAGGATACCTATAAACATGAGG 891
||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||
Sbjct 842 AAACACAGTGGCATGAGCCGAGAGGAAGAGACTCATTGCAGGTTACCTATAAACATGAGG 901
Query 892 CAAAGACTCAATCCACCGCTAGAAGAGGAGTGTTTTGGGAATGTAAGCCAAACCGGGATA 951
||| | || ||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 902 CAACGGCTAAATCCGCCACTAGAAGAAGAGTGTTTTGGGAATGTAAGCCAAACCGGGATA 961
Query 952 GCCACGGTCACGGTTGGGGAGCTGCTGGACCATGGACTAGGCTGGGCTGCTATGCAAATC 1011
|| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 962 GCTACGGTCACGGTTGGAGAGCTGCTGGACCATGGACTAGGCTGGGCTGCAATGCAAATC 1021
Query 1012 AACAACATGGAGCTGTCACAAACTGATGAAAAAGCCAAAGAATTTGCAGAGAATTGGGTG 1071
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1022 AACAACATGGAGCTGTCACAAACTGATGAAAAAGCCAAAGCATTTGCAGAGAATTGGGTG 1081
Query 1072 AAAAATATCAAGATTCCGGTTTCTGTCGGTAGCAAAGATTTAGTTGTCACAAACTCTCAC 1131
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1082 AAAAATATCAAGATTCCGGTTTCTGTTGGTAGCAAAGATTTAGTTGTCACAAACTCTCAC 1141
Query 1132 CGGTTCGATGTGTATTGCAATGATTTCGGTTGGGGTAAACCGATTGCTGCAAGAGCTGGA 1191
|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1142 CGGTTCGATGTGTACTGTAATGATTTCGGTTGGGGTAAACCGATAGCTGCAAGAGCTGGA 1201
Query 1192 CCACCGTATCTCAATGGAAGGCTCGTCGTTTTCAGAGGAATCG-ATCAAGAAAGTCTTGA 1250
|||||||||||||||||||| ||||| ||||||| |||||| | | ||| |||||||||
Sbjct 1202 CCACCGTATCTCAATGGAAGACTCGTTGTTTTCAAAGGAATTGGAG-AAGCAAGTCTTGA 1260
Query 1251 TTTTCAGGCTTGTTTACTGCCTCAAGTAGTGGAAAAATTATTGAAGGATGTTGAATTTAA 1310
|||||||||||||||||||||||| ||||||||||||||| | || |||| |||||||||
Sbjct 1261 TTTTCAGGCTTGTTTACTGCCTCAGGTAGTGGAAAAATTAGTCAAAGATGCTGAATTTAA 1320
Query 1311 CGAGTATGTATGCATTGTATGATAATGATTTGGTTCAGCAA 1351
||| |||||| ||||||||||| | |||||||||| |||||
Sbjct 1321 CGAATATGTAAGCATTGTATGAGA-TGATTTGGTTTAGCAA 1360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66515722125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5