BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496886
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67140.1 | Symbols: | F-box/RNI-like superfamily protein | ... 1288 0.0
> AT5G67140.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:26793880-26795303 REVERSE LENGTH=906
Length=906
Score = 1288 bits (697), Expect = 0.0
Identities = 796/843 (94%), Gaps = 10/843 (1%)
Strand=Plus/Plus
Query 27 AAGAAGCTCTAAATTCATACAAGTCATGGATGAAGAAGCAGCGATTGATCGATTACCGTT 86
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 66 AAGAAGCTCTAAAATCATACAAGTCATGGATGAAGAAGCAGCGATTGATCGTTTACCATT 125
Query 87 AGACCTTCTGGCTTATATATTTTCATTGGTC-ACTTCTTTCACCGTTTTGGGGCAGGCAA 145
||||||||| || ||||||||||| |||| | ||||||||||||||||||| |||||||
Sbjct 126 AGACCTTCTTGCATATATATTTTCGTTGG-CTACTTCTTTCACCGTTTTGGCCCAGGCAA 184
Query 146 GTGGTGTTTGCAAGAAATGGAGAAAAGCTGTAAATCAATCGATGGCGAGAAGAGAATCTC 205
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 185 GTGGTGTTTGCAAGAAATGGAGAAAAGCTGTAAATCAATCGATGGCGAGAAGAGAAACTC 244
Query 206 TGAGCTTCGCTGGTTGGAAAATGGACGATGATTCCACTTCTCGTCTTGTTCATCTTGCTT 265
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 245 TGAGCTTTGCTGGTTGGAAAATGGACGATGATTCCACTTCTCGTCTCGTTCATCTTGCTT 304
Query 266 ACAACCTCAAAGAACTCGACATATCTCGAAGCAGATGGGGTTGTCATATAACTGATATTG 325
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 305 TCAACCTCAAAGAACTCGACATATCTCGAAGCAGATGGGGTTGTCATATAACTGATAATG 364
Query 326 GTCTTTACCAAATAGCTTCTGCAAGATGTGTTTCCAATTTAAACTCTGTTTCTTTATGGG 385
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 365 GTCTTTACCAAATAGCTTCTGCAAGATGTGTATCCAATTTAAACTCTGTCTCTTTATGGG 424
Query 386 GCATGACCGCCATTACTGATTCTGGTGTTGTTCAACTGATTTCAAGAACTTCTTCACTGC 445
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 425 GCATGACCGCCATTACTGATTCTGGTGTTGTTCAACTGATTTCAAGAACTTCCTCACTGC 484
Query 446 AACACCTAAACATAGGAGGAACGTTTATAACCGATGAGTCTCTTTTCGCTATTGCAGAAC 505
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 485 AACACCTAAACATAGGAGGAACATTTATAACCGATGAGTCTCTTTTCGCAATTGCAGAAC 544
Query 506 GCTGCCATCATCTTAAGACAATTGGAATGTGGTGTTGCCGTCATGTGACAGAGAGAGGCC 565
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 545 GCTGCCATCAGCTTAAGACAATCGGAATGTGGTGTTGCCGTCATGTGACAGAGAGAGGCC 604
Query 566 TTCTTGTTCTTGTAAACAAATGCAGAAAACTCGAATCTATCAACTTATGGGGAACTAGAG 625
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 605 TTCTTGTTCTTGTAAACAAATGCAGAAAACTCGAATCCATCAACTTATGGGGAACTAGAG 664
Query 626 TTCATGTGGATTGCTTCATTGCTTTACTTACCATCAGTCCTGCACTTCAGATCAAACCCA 685
||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 665 TTCCTGTAGATTGCTTCATTGCTTTACTTACCATCAGTCCTGCTCTTCAGATCAAACCCA 724
Query 686 TGGAATTGCTCCTTAATGCTCAGAATCCACCACCATTGTTGCATGCTGTCTAGTGTTGCT 745
|||||||||| || |||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 725 TGGAATTGCTTCTCAATGCTCAGAATCCACCACCGTTGCTGCATGCTGTCTAGTGTTGCT 784
Query 746 CAACAT-TTGTCCTGTTTGTTGTGTACATAGTAATTCATAAAATTGAATCTGCATATATC 804
|| ||| || || ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 785 CATCATATT-TCTTGTTTGTTGTGTACATAGTAATTCATACAATTGAATCTGCATATATC 843
Query 805 TTATGCGTTCTCGGTTCTTCCATCAATAACATATATAAATTA-TA--CAGTAAAGTTTCT 861
||||| |||||| | | || ||||| |||||||||| || | || |||||||||||||
Sbjct 844 TTATGTGTTCTC--T-CATCAATCAACAACATATATATATAAATATTCAGTAAAGTTTCT 900
Query 862 ATT 864
|||
Sbjct 901 ATT 903
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAACTAATGATATATACAAACAA 28
||||||||||||||||||||||||||||
Sbjct 1 ATGAAGAACTAATGATATATACAAACAA 28
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5