BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496889
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH) DNA-... 1197 0.0
> AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:26785106-26786383 REVERSE
LENGTH=904
Length=904
Score = 1197 bits (648), Expect = 0.0
Identities = 827/907 (91%), Gaps = 38/907 (4%)
Strand=Plus/Plus
Query 1 AATTTTTACACACAGAGTagagagagagagagagagagagagaTAGATGGGTGATTCTGA 60
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1 AATTTTTACACACAGAGTAGAG-CAGAGAGAGAGAGAGAGAGAGAGATGGGTGATTCTGA 59
Query 61 CGTCGGTGATCGTCTTCCTCCTCCATCTTCTTCCGACGAACTCTCGAGCTTTCTCCGGCA 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 CGTCGGTGATCGTCTTCCCCCTCCATCTTCTTCCGACGAACTCTCGAGCTTTCTCCGACA 119
Query 121 AATTCTTTCTCGTACTCCGACAGCTCACCCTTCGTCACCACCGAAGAG-A--AATGTTTC 177
|||||||| |||||||| |||||||| ||||| |||||||||||||| | ||||||||
Sbjct 120 GATTCTTTCCCGTACTCCTACAGCTCAACCTTCTTCACCACCGAAGAGTACTAATGTTTC 179
Query 178 CTCCGCTGAGACCTTCTTCCCTTCCGTTTCCGGTGGAGCGGTTTCTAT-CGCCGGTTATG 236
||||||||||||||||||||||||||||||||| ||||| |||||| | || ||||||||
Sbjct 180 CTCCGCTGAGACCTTCTTCCCTTCCGTTTCCGGCGGAGCTGTTTCT-TCCGTCGGTTATG 238
Query 237 GAG--TC-G---C---CCAAGAAAAATATGCTTTCGAAAATAAGAGAAATGGAGCTAAAC 287
||| || | | |||||| ||||||||||||||| | ||||||| |||||||||||
Sbjct 239 GAGTCTCTGAAACTGGCCAAGACAAATATGCTTTCGAACACAAGAGAAGTGGAGCTAAAC 298
Query 288 AGAGGAATTCGTTGAAGAGAACCATTGATGCTCAATTCCACAACTTGTCTGAAAAGAGGA 347
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 299 AGAGAAATTCGTTGAAGAGAAACATTGATGCTCAATTCCACAACTTGTCTGAAAAGAAGA 358
Query 348 GGAGGAGCAAGATCAACGAGAAAATGAAAGCTTTGCAGAAACTCATACCCAATTCCAACA 407
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 359 GGAGGAGCAAGATCAACGAGAAAATGAAAGCTTTGCAGAAACTCATTCCCAATTCCAACA 418
Query 408 AGACTGATAAAGCTTCAATGCTTGATGAGGCTATTGAATATCTGAAGCAGCTTCAACTTC 467
||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 419 AGACTGATAAAGCCTCAATGCTTGATGAAGCTATAGAATATCTGAAGCAGCTTCAACTTC 478
Query 468 AAGTTCAGACTTTAGCCGTTATGAATGGTTTAGGCCTAAACCCTATGCGATTACCACCGG 527
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 479 AAGTCCAGACTTTAGCCGTTATGAATGGTTTAGGCTTAAACCCTATGCGATTACCACAGG 538
Query 528 TTCTACCTCCAACTCATACAAGGATCAATGAGACCTTAGAGCAAGACCTGAACCTAGAGA 587
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTCCACCTCCAACTCATACAAGGATCAATGAGACCTTAGAGCAAGACCTGAACCTAGAGA 598
Query 588 CTCTTCTTGCTGCTCCTCACTCGCTGGAACCACCTCAAGCAACTCAAGAAATGTGCTTTT 647
||||||| |||||||||||||||||||||||| || || ||| ||||| |||||||||||
Sbjct 599 CTCTTCTCGCTGCTCCTCACTCGCTGGAACCAGCTAAAACAAGTCAAGGAATGTGCTTTT 658
Query 648 CCACAGCTACTCTGCTTTGAAGATAACATTCAGACAATGATGATGATCAGAATTCCTCTA 707
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 659 CCACAGCCACTCTGCTTTGAAGATAACATTCAGACAATGATGATGATCGGAATTCCTCTA 718
Query 708 GTACCTGCCAGACA----TGA-----GTTTT-AGT---A---TTGGCCAGATTT-TAATG 750
|||||||||||||| ||| ||||| ||| | |||||||||||| || ||
Sbjct 719 GTACCTGCCAGACAGGAGTGAACAATGTTTTGAGTTTTAGCATTGGCCAGATTTCTA-TG 777
Query 751 TTCAGTTATAGTTATGCTATTCAGCTTTAGGAGTGAACAAAAA-TGAGTAGTTTGATTAA 809
||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||
Sbjct 778 TTCAGTTATAGTTATGCTAATAAGCTTTAGGAGTGAACAAAATCTGAGTAGTTTGATTAT 837
Query 810 AATGATGTCTGAAGAAGATTATATA-AAA-GACCAATTTAGTTACAT--GAGATGATTAT 865
|||||||||||||| |||||||||| ||| ||| |||||| |||||| |||||||||||
Sbjct 838 AATGATGTCTGAAGCAGATTATATATAAAAGACTAATTTACTTACATATGAGATGATTAT 897
Query 866 TACAACT 872
|||||||
Sbjct 898 TACAACT 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42548322509
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5