BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496895
Length=1091
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67060.1 | Symbols: HEC1 | basic helix-loop-helix (bHLH) DNA... 1650 0.0
> AT5G67060.1 | Symbols: HEC1 | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:26766128-26767250 FORWARD
LENGTH=1123
Length=1123
Score = 1650 bits (893), Expect = 0.0
Identities = 1043/1111 (94%), Gaps = 28/1111 (3%)
Strand=Plus/Plus
Query 1 ACCATTGCCATTTCTCTCACACATACCGTCTCTTTCTCTCATCATCAATCATCAATCATC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACCATTGCCATTTCTCTCACACATACCGTCTCTTTCTCTCATCATCAATCATCAATCATC 60
Query 61 CAAAAG-AAAAACCCTAAAATTTCACTTGTAAGCTTTTTACCAGTTTCTCTCCATACCC- 118
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 CAAAAGAAAAAACCCTAAAATTTCACTTGTAAGCTTTTCACCAGTTTCTCTCCATACCCA 120
Query 119 TTTTCATCAGCTTCTCCATATCTTTCTCTATGGATTCTGACATAATGAACATGATGATGC 178
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTT-ATCAGCTTCTCCATATCTTTCTCTATGGATTCTGACATAATGAACATGATGATGC 179
Query 179 ATCAGATGGAGAAGCTTCCTGAATTCTGTAACCCTAATTCCTCTTTCTTCTCTCCCGACC 238
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 180 ATCAGATGGAGAAGCTTCCTGAGTTTTGTAACCCTAATTCCTCTTTCTTCTCTCCCGACC 239
Query 239 ACAACAACACTCACCCTTTTCTCTTTAACTCAACTCATTACCACTCCGATCAGGCAATGA 298
||||||||||| ||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 240 ACAACAACACTTACCCTTTTCTCTTTAACTCCACTCATTACCAGTCCGATCACTCAATGA 299
Query 299 CCAACGAACCAGGTTTCCGGTACGGTTCCGGTTTACTCACTAACCATTCTTCTATCT-TC 357
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||
Sbjct 300 CCAACGAACCAGGTTTCCGCTACGGTTCCGGTTTACTCACTAACCCTTCTTCTATCTCTC 359
Query 358 CCCAACACAGCCTACTCTTCCGTTTTGCTTGACAAAAGAAACAACACTAGCAACAACAAT 417
|| |||||||| |||||||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 360 CC-AACACAGCTTACTCTTCCGTTTTTCTTGACAAAAGAAACAACAGTAACAACAACAAT 418
Query 418 AATAGCACGAACATGGCAGCTATGCGAGAGATGATCTTTCGCATCGCCGTGATGCAGCCG 477
||| |||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 419 AATGGCACGAACATGGCAGCTATGCGAGAGATGATCTTCCGTATCGCCGTGATGCAACCG 478
Query 478 ATACATATAGATCCCGAGGCGGTTAAGCCACCGAAGAGGAGGAACGTCAGGATCTCTAAA 537
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ATCCATATCGATCCCGAGGCGGTTAAGCCACCGAAGAGGAGGAACGTCAGGATCTCTAAA 538
Query 538 GATCCACAGAGCGTGGCGGCTAGGCATAGAAGGGAGAGGATAAGCGAGAGGATTCGGATT 597
||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 539 GATCCTCAAAGCGTGGCGGCTAGGCATAGAAGGGAGAGAATAAGCGAGAGGATTCGGATT 598
Query 598 TTGCAACGGCTTGTTCCTGGTGGGACGAAGATGGATACAGCTTCGATGCTCGACGAAGCT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 599 TTGCAACGGCTTGTTCCTGGTGGGACGAAGATGGATACAGCTTCGATGCTCGATGAAGCA 658
Query 658 ATTCACTATGTGAAGTTTTTAAAGAAACAGGTGCAGTCACTGGAGGAGCAGGCGGTGGTT 717
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 659 ATTCATTATGTGAAGTTTTTAAAGAAACAGGTGCAGTCTCTGGAGGAGCAGGCGGTGGTT 718
Query 718 AATGGCGGAGG---AGGA--AGG-G------TTTTGATCGGTGGAGGTGGAATGACGGCG 765
| ||||||||| |||| ||| | |||||||||||||||||||||||||||||
Sbjct 719 ACTGGCGGAGGGGGAGGAGGAGGAGGAAGGGTTTTGATCGGTGGAGGTGGAATGACGGCG 778
Query 766 GCGAGTGGTGGTGGTGGCGGCGGAGGAGTGGTTATGAAAGGGTGTGGAACAGTGGGGACT 825
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 779 GCGAGTGGTGGTGGTGGCGGCGGGGGAGTGGTTATGAAAGGGTGTGGAACAGTGGGGACT 838
Query 826 CATCAGATGGTGGGCAATGCACAGATTCTTAGATGATGATGatttttaattttattatta 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CATCAGATGGTGGGCAATGCACAGATTCTTAGATGATGATGATTTTTAATTTTATTATTA 898
Query 886 ttatattaATGTTTGAGAAAA-GaaaaaaaTGATTCTGGAGAGGGAAG--AATTAATTTA 942
||||||||||||| ||||||| || ||||||||||||||||||||||| || |||||||
Sbjct 899 TTATATTAATGTTGGAGAAAAAGAGAAAAATGATTCTGGAGAGGGAAGCCAAGTAATTTA 958
Query 943 TATGAGAGTCTTTTAACtttttttttttAATTTTCTTGTTTAGATAATGTATG-TGATGG 1001
| ||||||||||| || ||| ||| | |||||||||||||||||||| | ||||||
Sbjct 959 TGTGAGAGTCTTT-AA-TTTAACTTT--A-TTTTCTTGTTTAGATAATGTGTAATGATGG 1013
Query 1002 TTTTTAAAGCCAAACACTCTCCATGGTTGTTGGAGCGACGTT-GTAAATTAGGAACTATT 1060
|||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1014 TTTTTAAAGCCAAAGACTCTCCATGGTTGTTGGAGCGA-GTTTGTAAATTAGGAACTATT 1072
Query 1061 ATCATCGTATCCTTGTTAATCAAATAATTAA 1091
||||| |||||||||||||||||||||||||
Sbjct 1073 ATCATTGTATCCTTGTTAATCAAATAATTAA 1103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53463580425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5