BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496899
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67020.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2039 0.0
AT3G50340.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 828 0.0
> AT5G67020.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G50340.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:26749850-26751249 FORWARD LENGTH=1400
Length=1400
Score = 2039 bits (1104), Expect = 0.0
Identities = 1260/1335 (94%), Gaps = 11/1335 (1%)
Strand=Plus/Plus
Query 25 CTCTCA-CCAAAATTTTCAAATATGCTTACAACTTTCTAAAAATCTGCTCTTTCTCTTTC 83
|||||| |||||| ||||||| || || ||| |||||||||||| ||||||||||||| |
Sbjct 42 CTCTCACCCAAAAATTTCAAAAATTCTAACATCTTTCTAAAAATTTGCTCTTTCTCTTAC 101
Query 84 CTGAGTGAAACATGGTCGACGTTGACCGGAGAATGACCGGTTTGACTCCGGCTCACGCAG 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 102 CTGAGTGAAACATGGTCGACGTTGACCGGAGAATGACCGGTTTGACTCCGGCTCACGCAG 161
Query 144 CCGGTCTCCGCCGTCTCTCAGCTCGCGCCGCCGCTCCATCCACTCCTATGATCAGAAACA 203
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 162 CCGGTCTCCGCCGTCTCTCAGCTCGCGCCGCCGCTCCATCCACTCCTACGATCAGAAACA 221
Query 204 GCCTTCAATCTTTCTCCCCTTTCGCTGATAAAGTAATCAATCATCTTAAAAATTCAGGTA 263
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 222 GCCTTCAATCTTTCTCCCCTTTCGCCGATAAAGTAATCAATCATCTTAAAAATTCAGGTA 281
Query 264 TCAAAATCCAACCGGGTCTCTCCGACACCGAGTTTGCCCGAGTCGAAGCCGAGTTTGGTT 323
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 TCAAAATCCAACCAGGTCTCTCCGACACCGAGTTTGCCCGAGTCGAAGCCGAGTTTGGTT 341
Query 324 TCACTTTCCCACCGGACATCCGTGTTATCCTCACCGCCGGTATCTCCGTCGGTC-CAGGA 382
|||| |||||||||||| |||||||||||||| |||||||| |||||||||| | |||||
Sbjct 342 TCACCTTCCCACCGGACCTCCGTGTTATCCTCTCCGCCGGTCTCTCCGTCGG-CGCAGGA 400
Query 383 TTCCCAGATTGGCGTTCTCCCGGAGCTCGTCTCCACCTCCGTGCCATGATCGAACTACCC 442
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 401 TTCCCAGACTGGCGTTCTCCCGGAGCTCGTCTCCACCTCCGTGCCATGATCGATTTACC- 459
Query 443 A-TCGCCGCCGTATCGTTCCAAATCGCCAAAAACAGTCTCTGGTGCAAATCTTGGGGCTT 501
| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 460 AGTCGCCGCTGTATCGTTCCAAATCGCTAAAAACAGTCTCTGGTGCAAATCTTGGGGCTT 519
Query 502 TAAACCACCCGACCCGGGAAAAGCTTTACGGGTCGCGAGAAACGCCTTAAGAAGAGCTCC 561
|||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||
Sbjct 520 GAAACCACCCGACCCGGAAAAAGCTTTAAGGGTCGCGAGAAACGCCTTAAAAAGAGCTCC 579
Query 562 TTTAATGATCCCCATCTTCGATCACTGCTACATTCCTTGTAACCCGTCTTTAGCGGGTAA 621
|||| |||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 580 TTTACTGATTCCCATCTTTGATCACTGCTACATTCCTTGTAACCCGTCTTTAGCTGGTAA 639
Query 622 TCCGGTTTTCTTCATCGACGAGACTCGGATCTTCTGTTGCGGGTCGGATCTTTCCGAGTT 681
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 640 TCCGGTTTTCTTCATCGACGAGACTCGGATCTTCTGTTGCGGGTCGGATCTATCCGAGTT 699
Query 682 CTTCGAGCGAGAATCTGCTTTTCGAAGCTCCGAATTCTTCCCGAGAATTCTCACTAAGCA 741
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 700 CTTCGAGCGTGAATCTGCTTTTCGAAGCTCTGAATTCTTCCCGAGAATTCTCACTAAGCA 759
Query 742 ACGTTCAGTGAGCGAGAAATCAGCTGGATCATCCTCGAATATTTCCCGGAGAAGCTTAGA 801
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 760 ACGTTCAGTGAGCGAGAAATCAGCTGGATCATCCTCGAATTTTTCCCGGAGAAGCTTAGA 819
Query 802 TTCGGGTCGGGCTAACGG-GATGGGTAAGTCGAGATGGGTTGAATTCTGGAGTGACGCTG 860
|| |||||||||||| || | ||||||||||||||||||||| || ||||||||||| |
Sbjct 820 TTTGGGTCGGGCTAATGGTGC-GGGTAAGTCGAGATGGGTTGAGTTTTGGAGTGACGCGG 878
Query 861 CGGTGGATCGTTGCCGGCGAAACTCCGCCTC-ACCATCGTCGTCATCTTCTTCATCGCCG 919
|||| |||||||||||||||||||| ||||| || ||| ||||| |||||||||||||||
Sbjct 879 CGGTTGATCGTTGCCGGCGAAACTCTGCCTCCAC-ATCATCGTCGTCTTCTTCATCGCCG 937
Query 920 GACCTTCCCAAAACAGAGACTCCGAAATGGGTAAACCAGTACGTAAACCGGATCGGTTCG 979
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 938 GACCTTCCCAAAACAGAGACTCCGAAATGGGTGAACCAGTACGTAAACCGGATCGGTTCG 997
Query 980 ATATTGAGAGGAGGCGGGTGGAGCGAATCCGATATTGATGAGATAATCCACGTGTCAGCA 1039
| || ||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 998 GTTTTAAGAAGAGGCGGGTGGAGCGAATCCGATATTGATGAGATTATCCACGTGTCAGCA 1057
Query 1040 TCGGGTTTCTTTGAGGGTGAAATGGTAATTATGGATAATCAAACTGTTCTTGATGTGCTT 1099
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1058 TCGGGTTTCTTTGAGGGCGAAATGGTAATTATCGATAATCAAACTGTTCTTGATGTGCTT 1117
Query 1100 TTATTAAAAGCGGGTCGGATCTCTGAGTCGCTCCGTAAATCCGGTTGGAGCTCCGAAGAA 1159
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1118 CTATTAAAAGCGGGTCGGATCTCAGAGTCGCTCCGTAAATCCGGGTGGAGCTCCGAAGAA 1177
Query 1160 GTCTCGGACGCGCTTGGGTTTGGTTTTCGACCGGAAAAGGAGAGGAAACCGGTTCAGAAA 1219
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1178 GTCTCGGACGCGCTTGGGTTTGATTTTCGACCGGAAAAGGAGAGGAAACCGGTTAAGAAA 1237
Query 1220 CTCTCGCCTGTGCTCGTCGAACAATTCGAAAAACTTGCTGAATGGGTTTCCCGGTCATGA 1279
||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1238 CTCTCGCCTATGCTCGTCGAACAATTCGAAAAACTTGCTGAATGGGTTTCTCAGTCATGA 1297
Query 1280 AACACATTACATATTTACATTGGAATCGTAGTAATGATAATATCAATTATAAATA-ATTA 1338
||||||||||| ||||||||||||||| |||||||| | |||| |||| || || ||||
Sbjct 1298 AACACATTACAAATTTACATTGGAATCATAGTAATGGTGATAT-AATTGTATATTGATTA 1356
Query 1339 CTGATGTTTTGCTTC 1353
|||||||||||||||
Sbjct 1357 CTGATGTTTTGCTTC 1371
> AT3G50340.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G67020.1);
Has 128 Blast hits to 128 proteins in 39 species: Archae -
0; Bacteria - 46; Metazoa - 0; Fungi - 3; Plants - 76; Viruses
- 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:18665094-18666672
REVERSE LENGTH=1579
Length=1579
Score = 828 bits (448), Expect = 0.0
Identities = 986/1236 (80%), Gaps = 75/1236 (6%)
Strand=Plus/Plus
Query 95 ATGGTCGACGTTGACCGGAGAATGACCGGTTTGACTCCGGCTCACGCAGCCGGTCTCCGC 154
|||||||||||||| ||||||||||||||| | | || |||||||| || ||||||||
Sbjct 129 ATGGTCGACGTTGATCGGAGAATGACCGGTCTCAGACCAGCTCACGCCGCTGGTCTCCGT 188
Query 155 CGTCTCTCAGCTCGCGCCGCCGCTCCATCCACTCCTATGATCAGAAACAG-C-CTTCAAT 212
|||||||| |||||||||||||| ||| | || || | | | |||||||| | | || |
Sbjct 189 CGTCTCTCTGCTCGCGCCGCCGCACCAACAACACCAACGGTTAGAAACAGTCTCGTC--T 246
Query 213 CTTTCTCCCCTTTCGCTGATAAAGTAATCAATCA-TCTTA-AAAATTC-AGGTATCAAAA 269
||||||| || |||| ||| |||||||| ||| |||| | | ||| ||| ||| ||
Sbjct 247 CTTTCTCTTCTCTCGCCGATCAAGTAATC--TCACACTTACACACTTCAAGG-ATCCAAG 303
Query 270 TCCAACCGGGTCTCTCCGACACCGAGTTTGCCCGAGTC-GAAGCCGAGTTTGGTTTCACT 328
||||||||||||| ||||| |||| || || ||| | ||||| ||||||| ||| ||
Sbjct 304 TCCAACCGGGTCTAACCGACTCCGAATTCGCTAGAG-CAGAAGCAGAGTTTGCATTCGCT 362
Query 329 TTCCCACCGGACATCCGTGTTATCCTCACCGCCGGTATCT-CC-GTCGGTC-CAGGATTC 385
|| ||||||||| |||||| | | |||||||||||| | | || ||||| | | |||||
Sbjct 363 TTTCCACCGGACCTCCGTGCTGTTCTCACCGCCGGT-T-TACCAGTCGG-CGCCGGATTT 419
Query 386 CCAGATTGGCGTTCTCCCGGAGCTCGTCTCCACCTCCGTGCCATGATCGAACTACCCATC 445
||||| ||||||||||||||||||||||| || ||| | || |||||||| || || |||
Sbjct 420 CCAGACTGGCGTTCTCCCGGAGCTCGTCTTCATCTCAGAGCTATGATCGATCTTCCTATC 479
Query 446 GCCGCCGTATCGTTCCAAATCGCCAAAAACAGTCTCTGGTGCAAATCTTGGGGCTTTAA- 504
|||||||| ||||| || ||||| | ||||| ||||||| ||||||||||||| |||||
Sbjct 480 GCCGCCGTGTCGTTTCAGATCGCGAGAAACACTCTCTGGAGCAAATCTTGGGG-TTTAAG 538
Query 505 ACCACCCGACCCGGGAAAAGCTTTACGGGTCGCGAGAAACGC-CTTAAGAAGAGCTCCTT 563
|||| ||||||||| |||||||||||||||||||||||| || || || |||||||||||
Sbjct 539 ACCATCCGACCCGGAAAAAGCTTTACGGGTCGCGAGAAATGCTCTCAA-AAGAGCTCCTT 597
Query 564 TAATGATCCCCATCTTCGATCACTGCTACATTCCTTGTAACCCGTCTTTAGCGGGTAATC 623
| ||||| || ||||| ||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 598 TGATGATACCAATCTTTGATCATTGCTATATTCCTTGTAACCCGTCTTTAGCGGGTAACC 657
Query 624 CGGTTTTCT-TCATCGACGAGACTCGGATCTTCTGTTGCGGGTCGGATCTTTCCGAGTTC 682
||||||| | | || |||||||| ||||| ||||||||||||||||||||||| || |||
Sbjct 658 CGGTTTTTTAT-ATTGACGAGACCCGGATTTTCTGTTGCGGGTCGGATCTTTCTGATTTC 716
Query 683 TTCGAGCGAGAATCTGCT-TTTCGAAGCTCCGA-AT-TCTTCCCGA-GAATTCTCACTAA 738
|||||||| || |||| | ||| || | || || | | | || | | || | || ||
Sbjct 717 TTCGAGCGTGAGTCTG-TGTTTAGAGGGTCTGACACGTGT-CCGGTTGT-TT-TAACGAA 772
Query 739 GCAACGTTCAGTGAGCGAGAAATCAGCTGGATCATCCTCGA-------AT-A--TTTCCC 788
||| ||||| ||||| ||||||||||| || || || ||| || | ||| |
Sbjct 773 GCAGCGTTCGGTGAGTGAGAAATCAGCCGGGTCGTCGTCGTCTTCTTCATCAAATTTTTC 832
Query 789 GGAGAA-GC-TT-AGATTCGGGTCGGGCTAACGGGATGG-GTA-AGTCGAGATGGGTTGA 843
| |||| | || |||||||||||||| | ||||| | | ||| | |||||||||||||
Sbjct 833 G-AGAATGAGTTTAGATTCGGGTCGGGTTCACGGG-TCGAGTACAC-CGAGATGGGTTGA 889
Query 844 ATTCTGGAGTGACGCTGCGGTGGATCGTTGCCGGCGAAACTCCGCCTCACC-AT--CGTC 900
|| ||||||||||| ||||| |||||| | || ||||||| || || | || ||||
Sbjct 890 GTTTTGGAGTGACGCGGCGGTTGATCGTCGGAGGAGAAACTCTGCTTCTTCTATGTCGTC 949
Query 901 GTCAT-CTTCTTCATCGCCGGACC--T-TC--------CCAAAA-CAGAGACTCCGAAAT 947
|||| || ||||||||||||| | | |||| | | ||||| |||||||
Sbjct 950 GTCACACT-CTTCATCGCCGGAGAGATATTTAGATTTACCAAGATCCGAGACACCGAAAT 1008
Query 948 GGGTAAACCAGTACGTAAACCGGATCGGTTCGATATTGAGAGGAGGCGGGTGGAGCGAAT 1007
|||| || | ||||| ||||||||||| ||| | || ||||||||||||||||||||||
Sbjct 1009 GGGTCGACGATTACGTGAACCGGATCGGGTCGGTTTTAAGAGGAGGCGGGTGGAGCGAAT 1068
Query 1008 CCGATATTGATGAGATAATCCACGTGTCAGCATCGGGTTTCTTTGAGGGTGAAATGGTAA 1067
|||| ||||||| || | |||||||||||||| ||||| |||||||||||||||||||
Sbjct 1069 CCGACGTTGATGATATTGTACACGTGTCAGCATCTGGTTTTTTTGAGGGTGAAATGGTAA 1128
Query 1068 TTATGGATAATCAAACTGTTCTTGATG--T-GCTTTTATTAAAAGCGGGTCGGATCTCTG 1124
|| ||||||||||| | |||||||||| | |||||| ||| ||||||||| |||| |
Sbjct 1129 TTTTGGATAATCAAGCCGTTCTTGATGCATTGCTTTTG--AAA-GCGGGTCGGTTCTCGG 1185
Query 1125 AGTCGCTCCGTAAATCCGGTTGGAGCTCCGAAGAAGTCTCGGACGCGCTTGGGTTTGGTT 1184
|||||||||| ||| | || ||||||||||||||||| ||||| || ||||| |||| ||
Sbjct 1186 AGTCGCTCCGAAAAGCTGGATGGAGCTCCGAAGAAGTATCGGATGCACTTGGTTTTGATT 1245
Query 1185 TTCGACCGGAAAAGGAGAGGAAACCGGTTCAGAAACTCTCGCCTGTGCTCGTCGAAC-AA 1243
|||||||||| ||||||| ||||||||| |||| || || |||| || ||| ||| ||
Sbjct 1246 TTCGACCGGAGAAGGAGAAGAAACCGGTGAAGAAGCTATCTCCTGAACTTGTCCAACGAA 1305
Query 1244 TTCGAAAAACTTGCTGAATGGGTTTCCCGGTCATGA 1279
| || ||||||||||| | |||||| |||||||||
Sbjct 1306 T-CGGGAAACTTGCTGAGTCGGTTTCTCGGTCATGA 1340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66716524305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5