BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496902
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66980.1 | Symbols: | AP2/B3-like transcriptional factor fa... 1328 0.0
> AT5G66980.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr5:26741563-26742826 FORWARD LENGTH=1005
Length=1005
Score = 1328 bits (719), Expect = 0.0
Identities = 899/986 (91%), Gaps = 12/986 (1%)
Strand=Plus/Plus
Query 20 GTAAAGACTTAGAATTTTTCAAGGTCTTTCTCCCTGAATTCAGCTCTCACGAACTGGTGA 79
||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 14 GTAAAGACTTACAATTTTTCAAGGTCTTTCTCCCTGAATTCGGTTCTCACGAACTGGTGA 73
Query 80 TTCCTCCTGCATTCATTGACATATTAGACAAGGAATTACCTAAAGAAGCGTTCTTAGTCG 139
|||||||||||||||| || || ||||| || ||||||||||||||||||||||||||
Sbjct 74 TTCCTCCTGCATTCATCGATATGTTAGAGAAACCATTACCTAAAGAAGCGTTCTTAGTCG 133
Query 140 ATGAGATCGGACGGTTATGGTGTGTCGAGACAAAAACAGAAGACACAGAAGAAAGATTCT 199
||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 134 ATGAGATTGGACGGTTATGGTGTGTAGAGACTAAAACAGAAGATACAGAAGAAAGATTCT 193
Query 200 GTGTTTTGTTCAAAAAAGGTTGGGAAAGTTTCGCAAACGATCAATCTCTTGAATTTGGAG 259
||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 194 GTGTTTTCTTCACAAAAGGTTGGCAAAGTTTCGCAAACGATCAATCTCTTGAATTTGGAG 253
Query 260 ACTTTCTTGTGTTTC-GCTACGACGGCGATTCGAGATTCTCCGTTACGATTTTCGCTAAA 318
|||| ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 254 ACTTCCTTGT-CTTCAGCTACGACGGCGATTCCAGATTCTCCGTTACGATTTTCGCTAAT 312
Query 319 GACGGATGTAAAAAAGATATTGGTGTCGTCACAACCACGGATAGATCTAGGGTTTCTGTT 378
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 313 GACGGATGTAAAAAAGATGTTGGTGTCGTCTCAACCACGGATAGATCTAGGGTTTCTCTT 372
Query 379 GATGAGAAAGAACCAGTTGATATTTCTACTGAACCGGAAC-T-T-AG-GA--AAGATTGT 432
|||||| ||||||| | |||||||| |||| ||||||| | | | || || ||||||
Sbjct 373 GATGAGGAAGAACCGGATGATATTTTTACTAAACCGGATCGTATGAGAGATTGTGATTGT 432
Query 433 GGCCATAGGATTAACCAGAAACGGAAACGCGATTCGGTTAATGAAGATCCTCGTGTTA-T 491
||||| || ||||||| |||||||||||||||||||||||||||||| |||| | || |
Sbjct 433 GGCCAGAGCATTAACCGGAAACGGAAACGCGATTCGGTTAATGAAGACCCTCACG-TACT 491
Query 492 GGTTAACAATAAACCGGATTATGTTTCAACTAACAAAACCAAACCGGAGCATCGTGAAAA 551
|||| | |||||||||| |||||||||||| |||||||||||||||||||| |||||||
Sbjct 492 GGTTGATGATAAACCGGAGTATGTTTCAACTTACAAAACCAAACCGGAGCATAGTGAAAA 551
Query 552 GACTCAGAGAACAGTTAACCGGGCTGGAGATCCTTGTGACATATCATGGTGTCCTGAGAA 611
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||
Sbjct 552 GACTCAGAGAACAGTTAACCGGGCTGGAGATACTTGTGACATATCATGGTTTCCAGAGAA 611
Query 612 GGAACACAATGGATTTGAAGAATCGGTTTATAAACCCAAGCATCCTCATTTTCTAAGGAA 671
| |||||||||||||||||||||||||||| |||||||||||||| |||||| | |||||
Sbjct 612 GAAACACAATGGATTTGAAGAATCGGTTTACAAACCCAAGCATCCGCATTTTGTTAGGAA 671
Query 672 TATCACAATCGCTTCACTTCAGAAATTGGAAATACCGTTAACTTTTCTGAGATCGAACGG 731
|||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 672 TATCACAAGAGGTTCACTTCAGAAATTGGAATTACCGTTAACTTTTCTGAGATCGAACGG 731
Query 732 GATTGAATTGGAGGAAGA-AGTTGGGCTTTGTGATGAAAATGGAAAGAAGTGGCCTTTGA 790
|||||||||||||||||| | ||| |||||||||||||| ||||||||||||||||||||
Sbjct 732 GATTGAATTGGAGGAAGATA-TTGAGCTTTGTGATGAAAGTGGAAAGAAGTGGCCTTTGA 790
Query 791 AGATTGTGAATCACGGTAGAGGAGTCAAGTTCTCGCATGAATCATGGTTGTGTTTCTGTA 850
||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 791 AGATTCTGAATCACGACAGAGGATTCAAGTTCTCGCATGAATCATGGTTGTGTTTCTGTA 850
Query 851 AAAGCCATAACATGATGCTGACCCATAAGTGTCTATTTGAGTTTATTGTCCCAAGTAATG 910
|||||||| | ||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 851 AAAGCCATGAGATGATACTGACCAATAAGTGTCTATTTGAGTTTATTGTCCCAAGTAATG 910
Query 911 GGAGATGCAACGAGATTCAAGTTCGTATTGTCAGTGGGAGATTGCCTACCACTATGACTA 970
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 911 GGAGATGCAGTGAGATTCTAGTTCGTATTGTCAGTGGGAGATTGCCTACCACTATGACCA 970
Query 971 GACATAAATACCAAGTTCTTGCTATG 996
| |||| ||||||||| ||| ||||
Sbjct 971 AAAATAATTACCAAGTTATTGATATG 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48928059178
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5