BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496906
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66930.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1125 0.0
> AT5G66930.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF1649
(InterPro:IPR012445); Has 247 Blast hits to 247 proteins in
111 species: Archae - 0; Bacteria - 0; Metazoa - 89; Fungi -
83; Plants - 58; Viruses - 0; Other Eukaryotes - 17 (source:
NCBI BLink). | chr5:26725839-26727752 FORWARD LENGTH=959
Length=959
Score = 1125 bits (609), Expect = 0.0
Identities = 760/830 (92%), Gaps = 21/830 (3%)
Strand=Plus/Plus
Query 105 GGAAGTGGAATCCTTCGAGATTCGCGAAGTTTTGCGCTGCATTCTACATACCATTGTCTT 164
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 141 GGAAGTGGAATCCTTCGAGATACGCGAAGTTTTGCGCTGCATTCTACATACGATTGTCTT 200
Query 165 TCATCGTGCGCTTGGTCTTATCCGCCCTAAAGATATTGATTTGGAGCTTTTTGAGATCAC 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 TCATCGTGCGCTTGGTCTTATCCGCCCTAAAGATATTGATTTGGAGCTTTTTGAGATCAC 260
Query 225 ATACGTACAATGTGGTGAAATAGAAGTGGAAAAGAAAATTGATGAAAAGATTGAGCAATT 284
|| |||||||| |||||||| |||||||| |||||||| ||||||||||||||||| ||
Sbjct 261 TTATGTACAATGCGGTGAAATTGAAGTGGAGAAGAAAATCGATGAAAAGATTGAGCAGTT 320
Query 285 CATAAACTGGATTGAGAAACACCCAAACAAGAAGAGTCAGATATGTCTATCGTTCTATGA 344
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 321 CATTAACTGGATTGAGAAACACCCAAACAAAAAGAGTCAGATTTGTCTATCGTTCTATGA 380
Query 345 AGTCAAAAGCAAACAGCCGTCTTGGTTCACCAACAAGATTGAACGCTTGTACTGGGAACA 404
|||||||||||||||||| |||||||||||||| || | ||||| ||||||||||||||
Sbjct 381 AGTCAAAAGCAAACAGCCTTCTTGGTTCACCAA-AA--TCGAACGGTTGTACTGGGAACA 437
Query 405 ATGGTACATCAATCTGAATGTGCTTCAGCCCGCTAAGCCCCCAGTCGGAAAGTCTCACCA 464
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 438 ATGGTACATCAATCTGAATGTGCTTCAGCCCACTAAGCCCCCTGTCGGAAAGTCTCACCA 497
Query 465 TTCTAAACTAGTTATGGACCCTGGAGAGGCATCTGAGGAGAGAAGTTCTCGAAGGACACT 524
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 498 TTCTAAACTAGTTATGGACCCTGGAGAGGCATCGGAGGAGAGAAGTTCTCGTAGGACACT 557
Query 525 GCTTGAGCAGTCCCTTCAGGAAGTTTTATTCCAAATCATAAAATTCGTGAATGAGAAGAA 584
||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 558 GCTTGAGCAATCCCTTCAAGAAGTCTTGTTCCAAATCATAAAATTCGTGAATGAGAAGAA 617
Query 585 GGATCACGTTCCTCCCATTAACGATGGTGTAATCTACTGCCCTTTTGAGATCACTATCCC 644
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 618 GGATCATGTTCCTCCCATTAACGATGGTGTAATCTACTACCCTTTTGAGATCACTATCCC 677
Query 645 AAGCTCATCGGACTCAGCCTTTGGGATGGATATGTTCAAGAGGATACTCCACAGTGGCCA 704
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 678 AAGCTCATCGGACTCTGCCTTTGGGATGGATATGTTCAAGAGGATACTACACAGTGGCCA 737
Query 705 TCCATCGATGCTCGGCTAA-TTCCATTTTCCACTAAACTTAGTACATATACA-TTTGATG 762
|||||| |||||||||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 738 TCCATCAATGCTCGGCTAAATTCCATTTTCCACTTAACTTAGTACATATACACTTTGATG 797
Query 763 TTAT-TTGGTGCAGCCTAACTCCAATCAACACATTCCTAGTTGCATTTTCTGTGTAAATA 821
|| | ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 798 TT-TCTTGGTGCAGCCTAACTCCAATCAACACTTTCCTAGTTACATTTTCTGTGTAAATA 856
Query 822 TATAATAAAACTCAACACT-TGCCTCTTTCTCTC-A-ACCCT--C-TT-TCTCAGAGTTT 874
||| ||| | | | || | |||| | | | | | | | || ||| | | ||
Sbjct 857 TATTATATGT-T-ACC-CTCT-CCTCGT-CGATGGATAATGTTACCTTATCT-AT-GCTT 909
Query 875 TATTGTAAATAAGTGATGCGTTGTATATAAATTTCTGACTTGCATTTCCT 924
| ||||| |||||||||| |||||||||||||||| ||||||||||||||
Sbjct 910 TGTTGTATATAAGTGATGTGTTGTATATAAATTTCAGACTTGCATTTCCT 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5