BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496913
Length=1665
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66870.1 | Symbols: ASL1, LBD36 | ASYMMETRIC LEAVES 2-like 1... 2082 0.0
> AT5G66870.1 | Symbols: ASL1, LBD36 | ASYMMETRIC LEAVES 2-like
1 | chr5:26705862-26708676 FORWARD LENGTH=1752
Length=1752
Score = 2082 bits (1127), Expect = 0.0
Identities = 1432/1568 (91%), Gaps = 66/1568 (4%)
Strand=Plus/Plus
Query 1 tttttttCCCATTTTCTTCTCCTTCATGATCTTTTATTGGTTTTCTCTTCGTTTT-ATAA 59
|||||||||||||||||||| ||| |||||||||||||| || |||||||||||| | ||
Sbjct 8 TTTTTTTCCCATTTTCTTCTTCTTGATGATCTTTTATTGATTCTCTCTTCGTTTTAAAAA 67
Query 60 AATCTTCAGCCTTAGGGCAGAATAAATCGTAGATCAGATCAAATAATAGGGTTTCTCTGG 119
||||||||||||||||||||||||||||| |||||||||| |||||| |||||| |||||
Sbjct 68 AATCTTCAGCCTTAGGGCAGAATAAATCGGAGATCAGATCCAATAATCGGGTTTTTCTGG 127
Query 120 GTTTTCTCAGAAACCATAGAGCCCGATAGTTACTTCCTACTCACTCAACCTATCTCGCTA 179
||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| |||
Sbjct 128 GTTTTCTCAGAAACCCTAGA-CCCGATAGTAACTTCCTACTCACTCAACCTATCTCTCTA 186
Query 180 TCGATCATGAAATCAAACGATGAGGAGAGTGAGATACGAAGCTAGCAA-AACAAAGATCA 238
| ||||||| ||||||||||||| |||||||||| ||||||||||||| || ||| ||||
Sbjct 187 TTGATCATGGAATCAAACGATGAAGAGAGTGAGACACGAAGCTAGCAACAA-AAATATCA 245
Query 239 TAGAGAGGTTTTTGGAAAGGAGAAAGATTCGTTGTTTAATTGAGGCTCTCAAGTCT---- 294
|| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 246 TAAAGAGGGTTTTGGAAAGGAGAAAGATTCGTT-TTTAATTGAGGCTCTCAAGTCTGAAA 304
Query 295 ---------AAAAATGGCGTCTTCAAGCTCTCCTTGCGCAGCTTGTAAATTCTTGAGAAG 345
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 AGAGACAAAAAAAATGGCGTCTTCAAGCTCTCCTTGCGCAGCTTGTAAATTCTTGAGAAG 364
Query 346 AAAATGCACACAAGAATGTGTATTCGCTCCATATTTCCCACCAGACCAACCTCAAAAATT 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 AAAATGCACACAAGAATGTGTATTCGCTCCATATTTCCCACCAGACCAACCTCAAAAATT 424
Query 406 CGCATACGCTCACAAAGTCTTTGGGGCAAGTAACGTGGCTAAGCTTCTCAACGAGCTTGC 465
||||| || ||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 425 CGCATTCGTTCACAAAGTCTTTGGAGCAAGTAACGTCGCTAAGCTTCTCAACGAGCTTGC 484
Query 466 CTCTAACCATAGAGAAGACGCAGTAAACTCTCTATTCTACGAAGCAGAAGCTCGACTACG 525
||||||||| |||||||||||||| |||||||| ||||||||||| |||||| | ||||
Sbjct 485 CTCTAACCAAAGAGAAGACGCAGTGAACTCTCTTTTCTACGAAGCTGAAGCTAGGTTACG 544
Query 526 TGATCCGGTTTACGGTTGCGTCGGTTTAATCTCAATCCTTCAACACCGTCTTAAAC-AGC 584
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 545 TGATCCGGTTTACGGTTGCGTCGGTTTAATCTCAATCCTTCAACATCGTCTTAAACAAG- 603
Query 585 TGCAA-CAAGATCTTGAAAACGCCAAGAAAGAGCTTGCTACGTACGTTGGTCCTCAAGCT 643
| || || |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 604 T-TAACCACGATCTTGAAAACGCTAAGAAAGAGCTCGCTACGTACGTTGGTCCTCAAGCT 662
Query 644 ATGCTTCCTATTCTCCAACCGCCTCAACCGCATTTCATGTCTCCACCGCCGCAACCGCAA 703
||||| || ||||| |||||||||||||||||||| ||| || |||||||||
Sbjct 663 ATGCTCCCAATTCT---------TCAACCGCATTTCATGTCTCTACCACCTCAACCGCAA 713
Query 704 CGACCATCTTCTTCTTCAGCGTCTGTGTTGACTCAGCATCAACATAACTTGTTGCCAATG 763
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 714 CGACCGTCTTCTTCTTCAGCGTCTGTGTTGACTCAGCATCATCATAACTTGTTGCCGATG 773
Query 764 ATGGGTATTCCAACCGGACAATTGTACCATCAACAGCAACAACAGATCTTTGAGGCTCAG 823
|||| ||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 774 ATGGCTATTCCAACAGGACAACTGTACCATCAACAACAACAACAGATCTTTGAGGCTCAG 833
Query 824 CAGTTAGCAGCGGTTGCGAGAGAGCAACAAAATGAGATGTTTAGAGCTTAT---GGAGGA 880
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 834 CAGTTAGCAGCGGTTGCGAGAGAGCAACAGAATGAGATGTTTAGAGCTTATGGAGGAGGA 893
Query 881 GGAGGAAGTAGTAGTCCACACCATCAAAACCAAGCTCAAGCTGAGATTTTGAGGTTTAAC 940
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GGAGGAAGTAGTAGTCCACACCATCAAAACCAAGCTCAAGCTGAGATTTTGAGGTTTAAT 953
Query 941 AATGGGTTTGACTCTGTACCGGCCGGTTCAGTTACGGTTACTGGGTTTAATCAGTTAAGC 1000
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 AATGGTTTTGACTCTGTACCGGCCGGTTCAGTTACGGTTACTGGGTTTAATCAGTTAAGT 1013
Query 1001 TCCGGTGGTACAGCGGTAACCGGAATGTCTCTTGGAGGTAACTTTGTTGATAGTCCTTCG 1060
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TCTGGTGGTACAGCGGTAACCGGAATGTCTCTTGGAGGTAACTTTGTTGATAGTCCTTCG 1073
Query 1061 ACGAATAATAATTACCATACGGATCAGCAGTTACACCATCATCATCAACAGCAACAACAT 1120
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1074 ACGAATAATAATTACCATACGGATCAGCAATTACACCATCATCATCAACCGCAACAACAT 1133
Query 1121 CATGAGGCTCAACTATTCATACCTACACAATCTTCTCAGCCGCTACCGCTTCAAACGCAG 1180
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1134 CATGAGGCTCAACTATTCATACCTTCACAATCTTCTCAGCCGCTACCGCTCCAAACGCAG 1193
Query 1181 GAGACGCAAACGCTGACGCAGCCGAATTCAGAGAGCGAGGAGGGTAGAAGGAGTGTCATT 1240
||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1194 GAGACGCAAACGCAGACGCAGCCGAATTCGGAGAGCGAGGAGGGTAGAAGGAATGTCATT 1253
Query 1241 GGTTAATCTCGCTAATTGAGGAGTAATaaaaaa-aG--ATAC----------G----G-C 1282
|||||||||||||||||||||| |||||||||| || |||| | | |
Sbjct 1254 GGTTAATCTCGCTAATTGAGGAATAATAAAAAAGAGGGATACTAAAAACAAAGATACGGC 1313
Query 1283 CTTTGACCTTCTCGCTTGCTCGATAAACTCT-AAA-CAAATTTCCTAAGTTGGAAACTCT 1340
||||||||||||||||||||||||||||||| ||| ||| | |||||||||||||||||
Sbjct 1314 CTTTGACCTTCTCGCTTGCTCGATAAACTCTCAAAACAA-TC-CCTAAGTTGGAAACTCT 1371
Query 1341 GACTTTGCTCAAGGCATTATGGACGCAATCGAGTTTTTCTTTCTTCCTAATTTTGTCGGC 1400
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1372 GACTTTGCTCAAGGCATTATGGACGCAATCGAGTTTTTCTTTCTTCCTGATTTTGTCGG- 1430
Query 1401 ATTTCCAAAAGCGAAAAGACACCCACCACGTAAAAGTCAAACGACTCACAAAGAAGTCAC 1460
| ||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1431 ACGTCCAACAGCGAAAAGACACTCACCACGTAAAAGTCAAACGACTAACAAAGAAGTCAG 1490
Query 1461 CGTTATTTGGTTGATTTTTGTGTCCCGCAGACAGTTTTGGTGACGAGTATAAAGTATAAA 1520
| |||||||||||||||| | |||| ||||||||||||||| | || || |||||||
Sbjct 1491 C-TTATTTGGTTGATTTT-GAGTCCTGCAGACAGTTTTGGT-A----TA-AA-GTATAAA 1541
Query 1521 CCAAAGGC 1528
||||||||
Sbjct 1542 CCAAAGGC 1549
Score = 152 bits (82), Expect = 1e-35
Identities = 99/107 (93%), Gaps = 2/107 (2%)
Strand=Plus/Plus
Query 1561 TTTTTTGACATTTCTTTTGGTTTAAGT--AGAAAAGAAGAAATTAGTGTTTTTGGTTGCA 1618
|||||||||||||||||||||| |||| | ||||| |||||||||||||||||||||||
Sbjct 1636 TTTTTTGACATTTCTTTTGGTTCAAGTAAAAAAAAGGAGAAATTAGTGTTTTTGGTTGCA 1695
Query 1619 AATCTATCTGTAAATTAGATGTCAAGAGAAGGGTTACTTGCCCGAGT 1665
||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 1696 AATCTATTTGTAAATTAGATGTCAAGAGAAGTGTTACTTGCCCTAGT 1742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82278693255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5