BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496915
Length=2598
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66850.1 | Symbols: MAPKKK5 | mitogen-activated protein kina... 3814 0.0
> AT5G66850.1 | Symbols: MAPKKK5 | mitogen-activated protein kinase
kinase kinase 5 | chr5:26695607-26699324 REVERSE LENGTH=2674
Length=2674
Score = 3814 bits (2065), Expect = 0.0
Identities = 2320/2438 (95%), Gaps = 37/2438 (2%)
Strand=Plus/Plus
Query 1 ATTTCTGTTAAATCCGTTGGGTTCTTTCCATGGATCCTCATCGTCATCGCCACCATCTCC 60
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1 ATTTCTGTTAAATCCGTTGGGTTC-TTCCATGGATCCTCATCGTCATCGCCTCCATCTCC 59
Query 61 G----TCTT-TT-TTCTTGTGCTCGATTCTAATTCACGAAAGAGAGAAATAAATAAAAAG 114
| |||| || ||||| |||||||||||||||| || ||||||||||| ||| ||||
Sbjct 60 GTCTTTCTTCTTCTTCTTCTGCTCGATTCTAATTC-CGTAAGAGAGAAAT-AAT--AAAG 115
Query 115 GATTCATGTTCAGATCTTCT-TCT-ATGAGCATACCATGATTCTCTCGCTATGCGTTGGC 172
|||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 116 GATTCATGTTCACATCTTCTACCTGATGAGCATACCATGATTCTCTCGCTATGCGTTGGC 175
Query 173 TTCCGCAAAtctcgttctcgtctccttcttcttctccatcttcttctctAAAACCCGTGG 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 TTCCGCAAATCTCGTTCTCGTCTCCTTCTTCTTCTCCATCTTCTTCTCTAAAACCCGTGG 235
Query 233 CTTCTTACTCTGAATCTGCAGATCCAGATCGTAATCAGGATCGGGATCGATTTCATCGCC 292
||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 236 CTTCTTACTCTGAATCTCCGGATCCAGATCGTAATCAGGATCGGGATCGGTTTCATCGCC 295
Query 293 GCTTGTTTCGTTTTAACCGCGGCAGGCTCACCCGTCAGAGGAAGCTTCGTCACTTGACGG 352
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 296 GCTTGTTTCGTTTTAACCGTGGCAGGCTCACCCGTCAGCGGAAGCTTCGTCACTTGACGG 355
Query 353 ATGACGATGTTTTGTTGGGAGAACGTCGTGCTTCTACGTCTTCCTCCACCTTCGATTCCG 412
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 356 ATGACGATGTTTTGTTGGGAGAACGTCGTGCTTCTACCTCTTCCTCCACCTTCGATTCCG 415
Query 413 GTTTAACTCGCTCTCCCAGCGCTTTCACCGCCGTTCCTCGCTCTCCTTCTGCCGTTCCGT 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 416 GTTTAACTCGCTCTCCCAGCGCTTTCACCGCCGTTCCTCGCTCTCCTTCTGCCGTTCCCT 475
Query 473 TACCGTTACCTCTCCCGTTACCGGAGGTCGCCGGGAATCGTAATGCCGGAAACGGTAGAG 532
|||| ||||||||||| ||||||||||||||||||| ||| ||||||| ||||| |||||
Sbjct 476 TACCCTTACCTCTCCCCTTACCGGAGGTCGCCGGGATTCGAAATGCCGCAAACGCTAGAG 535
Query 533 GGTTGGATGAGAGAGATCGAGATCCCGAGAGAGTTATTGCTGATCGCACCTCTTCTGGTC 592
| |||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 536 GATTGGATGACAGAGATCGAGATCCCGAGAGACTTATTTCTGATCGCACCTCTTCTGGTC 595
Query 593 CTCCTCTCACCAGCGTCAATGGCGGCTTTGCCCGTGACTCGAGGAAAGCTACAGAGAATT 652
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 596 CTCCTCTCACCAGCGTCAATGGCGGCTTTGCCCGTGACTCGAGGAAAGCTACGGAGAATT 655
Query 653 CGTCATATCAAGATTTTAGTCCGAGAAACAGAAATGGTTATTGGGTGAACATTCCAACCA 712
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 656 CGTCATATCAAGATTTTAGTCCGAGAAACAGAAATGGTTATTGGGTGAATATTCCAACCA 715
Query 713 TGAGTGCACCAACGAGTCCATACATGAGTCCTGTGCCTAGTCCACAAAGGAAGAGTACTG 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TGAGTGCACCAACGAGTCCATACATGAGTCCTGTGCCTAGTCCACAAAGGAAGAGTACTG 775
Query 773 GACAAGATTTGCCttttttttATTTGCCTCCTAAAAGCAATCAAGCTTGGTCAGCTCCAG 832
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 776 GCCACGATTTGCCTTTTTTTTATTTGCCTCCTAAAAGCAATCAAGCTTGGTCTGCTCCAG 835
Query 833 ATATGCCACTTGATACCTCTGGACTTCCTCCTCCTGCCTTTTATGATATTACTGCCTTTA 892
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 836 ATATGCCACTTGATACCTCTGGTCTTCCTCCTCCTGCATTTTATGATATTACTGCCTTTA 895
Query 893 GTACCGATAATTCTCCCATTCATAGTCCACAACCTCGGAGTCCCCGCAGACAGATCAGAA 952
||||||||||||||||||| ||||||||||||||||||||||| || | |||||||||||
Sbjct 896 GTACCGATAATTCTCCCATCCATAGTCCACAACCTCGGAGTCCACGGAAACAGATCAGAA 955
Query 953 GCCCACAACCTAGCAGACCATCTTCACCGTTGCATTCCATTCTATCCCCTGATAGCTCAG 1012
|||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 956 GCCCACAACCTAGCAGACCATCTTCACCGTTG-----CATTCGGT----TGATAGCTCAG 1006
Query 1013 CTCCACCACGGGATAGTGTTTCCTCACCCTTGCATCCGAGGTTGTCTACTGATGTTACGA 1072
||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1007 CTCCACCGCGAGATAGTGTTTCCTCACCTTTGCATCCGAGGTTGTCTACTGATGTTACGA 1066
Query 1073 ATGGGCGACGTGATAGCTGCAATGTTCATCCTTTGCCTCTCCCTCCTGGAGCTGCTTGTC 1132
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1067 ATGGGCGACGTGATTGCTGCAATGTTCATCCTTTGCCTCTCCCTCCTGGAGCTACTTGTT 1126
Query 1133 CCTCTTCATCAGCTGCTTCTGTTCCGTCCCCGCAGGCTCCTCTCAAACTGGATTCATTCC 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 CCTCTTCATCAGCTGCTTCTGTTCCGTCCCCGCAGGCTCCTCTCAAACTGGATTCATTCC 1186
Query 1193 CGATGAATTCCCAGTGGAAGAAAGGGAAGCTAATAGGTCGTGGTACTTTTGGAAGTGTTT 1252
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 CAATGAATTCCCAGTGGAAGAAAGGGAAGCTAATAGGTCGTGGTACTTTTGGAAGTGTTT 1246
Query 1253 ACGTTGCAAGCAACAGTGAAACTGGAGCATTGTGTGCGATGAAAGAAGTTGAGCTATTTC 1312
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 ACGTTGCAAGCAACAGCGAAACTGGAGCATTGTGTGCGATGAAAGAAGTTGAGCTATTTC 1306
Query 1313 CTGATGACCCGAAATCCGCCGAGTGTATAAAGCAATTAGAGCAGGAGATCAAACTTCTAA 1372
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 CTGATGACCCCAAATCCGCAGAGTGTATAAAGCAATTAGAGCAGGAGATCAAACTTCTAA 1366
Query 1373 GTAACCTTCAACATCCAAACATTGTGCAGTACTTTGGTAGTGAGACAGTAGAAGATCGTT 1432
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1367 GTAACCTTCAACATCCAAACATTGTGCAGTATTTTGGTAGCGAGACAGTAGAAGATCGTT 1426
Query 1433 TCTTTATATACCTGGAGTATGTTCACCCGGGTTCAATAAACAAATATATCCGTGATCATT 1492
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 TCTTTATATACCTGGAATATGTTCACCCGGGTTCAATAAACAAATATATCCGTGATCATT 1486
Query 1493 GCGGCACCATGACAGAATCTGTTGTTCGCAATTTTACTCGTCACATTTTGTCTGGGCTGG 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 GCGGCACCATGACAGAATCTGTTGTTCGCAATTTTACTCGTCACATTTTGTCTGGGCTGG 1546
Query 1553 CTTATTTGCACAATAAAAAGACGGTCCATAGGGATATCAAAGGTGCTAATCTCCTTGTTG 1612
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1547 CTTATTTGCACAATAAAAAGACTGTACATAGGGATATCAAAGGTGCTAATCTCCTTGTTG 1606
Query 1613 ATGCGTCTGGGGTTGTCAAGCTTGCTGACTTCGGCATGGCTAAACACCTTACCGGGCAAA 1672
|||| ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 1607 ATGCTTCTGGGGTTGTCAAGCTTGCTGATTTCGGCATGGCTAAACACCTTACTGGACAAA 1666
Query 1673 GAGCCGATCTCTCGTTAAAGGGAAGCCCGTACTGGATGGCACCAGAGCTCATGCAAGCTG 1732
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 GAGCTGATCTCTCGTTAAAGGGAAGCCCGTACTGGATGGCACCAGAGCTCATGCAAGCTG 1726
Query 1733 TGATGCAAAAAGATAGCAACCCAGATCTGGCTTTTGCTGTTGATATATGGAGTTTAGGAT 1792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1727 TGATGCAAAAAGATAGCAACCCAGATCTGGCTTTTGCTGTTGATATATGGAGTTTAGGAT 1786
Query 1793 GTACAATCATTGAGATGTTCACTGGGAAGCCTCCTTGGAGTGAGTTTGAAGGGGCTGCAG 1852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1787 GTACAATCATTGAGATGTTCACTGGGAAGCCTCCTTGGAGTGAGTTTGAAGGGGCTGCAG 1846
Query 1853 CTATGTTCAAGGTCATGAGAGATAGCCCACCAATACCTGAATCAATGTCACCTGAGGGAA 1912
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1847 CTATGTTCAAGGTCATGAGAGATAGCCCACCGATACCTGAATCAATGTCACCTGAGGGTA 1906
Query 1913 AAGACTTTCTGAGATTATGCTTCCAGAGAAACCCAGCTGAGCGACCAACCGCATCTATGT 1972
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 AAGACTTCCTGAGATTATGCTTCCAGAGAAACCCAGCTGAGCGACCAACCGCATCTATGT 1966
Query 1973 TGCTAGAACATCGGTTCCTAAAGAACTCTCTGCAACCAACCTCACCAAGCAACACCGATG 2032
|||||||||| |||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 1967 TGCTAGAACACCGGTTCCTAAAGAACTCTTTGCAACCAACCTCACCAAGCAACA--G-TG 2023
Query 2033 TCTCGAATTGCTCTCAGTTAATTAACGGGATGAACATAACGGAACCAAGCAGTAGAAGAG 2092
| | | |||||| ||| |||| |||||||||||||||||||||||||||||||| |
Sbjct 2024 A-T-G--T--CTCTCAATTATTTAATGGGATGAACATAACGGAACCAAGCAGTAGAAGGG 2077
Query 2093 AGAAGCCAAATTTCAAACTAGACCAGGTCCCCCGAGCTAGAAATGTGACATCCTCAGAGA 2152
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 2078 AGAAGCCAAATTTCAAACTAGACCAGGTCCCGCGAGCTAGAAACATGACATCCTCAGAGA 2137
Query 2153 GTGAAAGTGGGCAACAGCAGCAGCAACAACAGTACCGGTCTCCTGATCTAACAGGAACCA 2212
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2138 GTGAAAGTGGGCAACAGCAGCAGCAACAACAGTACCGGTCTCCCGATCTAACAGGAACC- 2196
Query 2213 CCGTGAACCGTCTGTCTCCTCGATCCACTCTCGAGGCAATTCCAAGCCCGTCTCCTTCCC 2272
|||||||||||||||||||| |||||||| ||||| || |||||||||| ||||||||
Sbjct 2197 --GTGAACCGTCTGTCTCCTCGTTCCACTCTGGAGGCTATCCCAAGCCCGTGTCCTTCCC 2254
Query 2273 AACGACCTAAGCCCAGCA-C--TGACAGGAGAAGAACCTGCGCCTCTTCAGATCACCTAT 2329
|||||||||||||||||| | ||||||||||||||| ||| | ||||||||||||| |
Sbjct 2255 AACGACCTAAGCCCAGCAGCAGTGACAGGAGAAGAACGGGCGTCACTTCAGATCACCTTT 2314
Query 2330 GATTTGCAGCTCGAGAGGTTAACCACTAGAAGCTACTTGTATACGTATTCTTGTACACGT 2389
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 2315 GATTTGCAGCTCGAGAGGTTAACCAATAGAAGCTACTTCTATACGTATTCTTGTACACGT 2374
Query 2390 AAGTGTATGTCAATGTACGTATTTAGAGTTTGGGGTCG 2427
||||||||||||||||||||||||||||||||||||||
Sbjct 2375 AAGTGTATGTCAATGTACGTATTTAGAGTTTGGGGTCG 2412
Score = 156 bits (84), Expect = 1e-36
Identities = 93/97 (96%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 2503 ttttttttGCTTGAGAGAGTTGTGTATAAATTATTTTTAACGACGTCTTGTGTACATTTG 2562
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 2541 TTTTTTTTGCTTGAGAGAGTTGTGTATAAATTA-TTTTAACGACGTCTTGTGTACCTTTG 2599
Query 2563 GTTTCGGGTCTGTATC-ATTTTTAGATTTAGATCCAT 2598
|||||||||||||||| | ||||||||||||||||||
Sbjct 2600 GTTTCGGGTCTGTATCCACTTTTAGATTTAGATCCAT 2636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128979210453
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5