BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496919
Length=2388
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66810.1 | Symbols: | CONTAINS InterPro DOMAIN/s: CTLH, C-t... 3631 0.0
AT2G14430.1 | Symbols: | transposable element gene | chr2:6134... 93.5 9e-18
> AT5G66810.1 | Symbols: | CONTAINS InterPro DOMAIN/s: CTLH, C-terminal
LisH motif (InterPro:IPR006595); BEST Arabidopsis
thaliana protein match is: LisH and RanBPM domains containing
protein (TAIR:AT1G61150.1); Has 333 Blast hits to 242 proteins
in 88 species: Archae - 0; Bacteria - 0; Metazoa - 104;
Fungi - 47; Plants - 152; Viruses - 0; Other Eukaryotes - 30
(source: NCBI BLink). | chr5:26672926-26676613 FORWARD LENGTH=2416
Length=2416
Score = 3631 bits (1966), Expect = 0.0
Identities = 2271/2414 (94%), Gaps = 38/2414 (2%)
Strand=Plus/Plus
Query 1 ATGCCACGTGGCAATTGTTATGTGGGTTTGGA-TTT-T--C---TTCTACTCACGAAACA 53
||||||||||||| || |||||||| |||||| ||| | | |||| |||||||||||
Sbjct 1 ATGCCACGTGGCATTTATTATGTGGATTTGGATTTTCTAACTTGTTCTCCTCACGAAACA 60
Query 54 AAATT---TCACA-AAG----AGCGATCGTCGATCCCACACGCA-AGATC-GCG-GCGCC 102
||||| |||| ||| |||||||||||||||||| | || | ||| | ||||
Sbjct 61 AAATTCACCCACACAAGACAAAGCGATCGTCGATCCCAC-C-CACA-ATCTAAGATCGCC 117
Query 103 GGCCGATTCTCGTCGCCGACAAGAGAAGAACCTAGGATGAGAGAAA-CAACTATGGATTC 161
|||||||||||||||||||||| ||||||||| |||| ||| |||| |||||||||||||
Sbjct 118 GGCCGATTCTCGTCGCCGACAAAAGAAGAACCGAGGAAGAG-GAAAGCAACTATGGATTC 176
Query 162 CACACCTGTGAATTGGGAAGCGCTTGATGCTCTCATCATCGATTTCGTTAGCTCTGAAAA 221
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CACACCTGTAAATTGGGAAGCGCTTGATGCTCTCATCATCGATTTCGTTAGCTCTGAAAA 236
Query 222 CCTGGTTGAAGACGCCGCCGCCGCCGCCAAttcatctccatctccattatcgtctccttc 281
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 237 CCTGGTTGAAGACGCCGCCGCCGCCGTCAATTCACCTCCATCTCCATTATCGTCTCCTTC 296
Query 282 ttcttcttcctctccttctatttcctcttcttcttATCACTCCAGATTGATCATTCGCCG 341
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTCTTCTTCATCTCCTTCTATTTCCTCTTCTTCTTATCACTCCAGATTGATCATTCGCCG 356
Query 342 GATCCGAAACTCGATTGAATCCGGTGACATTGAGACCGCCATCGACATCCTTCGCTCCCA 401
|||||||| |||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 357 GATCCGAAGCTCGATTGAATCCGGTGACATTGAAACCGCCATCGATATTCTTCGCTCCCA 416
Query 402 CGCTCCTTTCGTCCTCGATGATCATCGGATTCTATTTCGCCTCCAGAAACAGAAATTTAT 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CGCTCCTTTCGTCCTCGATGATCATCGGATTCTATTTCGCCTCCAGAAACAGAAATTTAT 476
Query 462 TGAGCTGTTGAGAAAAGGAACACATGAAGCTGCAATTGGTTGCTTGAGAACTTGTGTTGC 521
|||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 477 TGAGCTTTTGAGAAAAGGAACACATGAAGCTGCAATTGATTGCTTGAGGACTTGTGTTGC 536
Query 522 TCCCTGTGCTCTTGATGCCTACCCGGAAGCTTATGAGGAATTCAAGCATGTTCTTCTTGC 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TCCCTGTGCTCTTGATGCCTACCCGGAAGCTTATGAGGAATTCAAGCATGTTCTTCTTGC 596
Query 582 ACTCATCTATGATAAAAATGACCAAACCTCTCCAGTAGCTCACGAGTGGGCAGAGAAAAG 641
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 597 ACTCATCTATGATAAAGATGACCAAACCTCTCCAGTAGCAAACGAGTGGGCAGAGAAAAG 656
Query 642 AAGGTATGAAATGGCTGGACTGATGTCATCTGTCTTGA-GAGCTTTTTTGCAAGCATATG 700
|||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||
Sbjct 657 AAGGTATGAAATGGCTGGACTGATGTCATCTGTCTT-ACGAGCTTCTTTGCAAGCATATG 715
Query 701 ATCCACTATTTTCGATGACACTAAGATATCTGATAAGCATACATAAAGGATTTTGCTTTC 760
||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 716 ATCCAGTATTTTCTATGACACTAAGATATCTGATAAGCATACACAAAGGATTTTGCTTTC 775
Query 761 ACCAAGGAATTTCCTCCGCAGTTTCTGATCTCACTCATAGACTGCTCCTGGAGGAACGTG 820
||||||||||||| ||||||||||||||||| || || ||| ||||||||||||||||||
Sbjct 776 ACCAAGGAATTTCTTCCGCAGTTTCTGATCTAACCCACAGATTGCTCCTGGAGGAACGTG 835
Query 821 ACGCACCAGCCACACCTCTGGAAAGCATGTATGAAGTACCACCGTTTGATGAGGTGGACA 880
| ||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| |
Sbjct 836 ATGCACCAGCCACGCCTATTGAAAGCATGTATGAAGTACCACCGTTTGATGAGGTGGATA 895
Query 881 TACAGGCTCTTGCTCATGCGGTTGAGCTCACTAGACAAGGTGCTGTTGATAGCATGAAAT 940
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 896 TACAGGCTCTTGCTCATGCGGTTGAGCTCACTAGACAAGGTGCTGTTGATAGTATGAAAT 955
Query 941 TTGCCAAAGGTGACCTTTTCCAGGCATTCCAGAATGAATTGTGCAGGATGCGGTTAGATG 1000
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 956 TTGCCAAAGGTGACCTTTTCCAGGCATTCCAGAATGAATTGTGCAGGATGCGATTAGATG 1015
Query 1001 TTTCGGTTCTTGATGAACTTGTTAAGGAGTACTGCATATACAGGGGTATTGTGGATTCAG 1060
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TTTCTGTTCTTGATGAACTTGTTAAGGAGTACTGCATATACAGGGGTATTGTGGATTCAG 1075
Query 1061 AGACGCAAATGATCACAG-GTCCTGCCAAACGCAACCAATCGGAGGTGGGCCGCAGCTTA 1119
||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 AGATGCAAATGATCAC-GATTCCTGCCAAACGCAACCAATCGGAGGTGGGCCGCAGCTTA 1134
Query 1120 TCAAGAGATTGTACTTCGGAAATAGATCTCAACACAAGTCAACAATCAGATATTGAGAAT 1179
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1135 TCAAGAGATTGTTCTTCGGAAATAGATCTCAACACAAGTCAACATTCAGATATTGAGAAT 1194
Query 1180 TATAGCAACAAGATCATGCTTGATGGCTCGTTCACATTTGACACTGAAATGTCTTGCGAA 1239
||||||||||||| |||||| |||||||| |||||| ||||||||||||||||||||||
Sbjct 1195 TATAGCAACAAGAGCATGCTCGATGGCTCACTCACATATGACACTGAAATGTCTTGCGAA 1254
Query 1240 CAAGGAGGTGACGTTGGCACACGTTATGGCAGCGAACCAACCAGCGTTTGTGAAGATTGC 1299
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1255 GAAGGAGGTGACGTTGGCACACGTTATGGCAGTGAACCAACCAGTGTTTGTGAAGATTGC 1314
Query 1300 AGCACTAGCTGGTCAAATCAATGTGAAAATACAAGAGCTCTTCTTAGAATTAGATCCCAT 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 AGCACTAGCTGGTCAAATCAATGTGAAAATACAAGAGCTCTTCTTAGAATTAGATCCCAT 1374
Query 1360 ATGAATAGTGAGGGGAATAAACGCAAAAGATGGTGTGGGCGTACTGCTGAAATGGATTGT 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 ATGAATAGTGAGGGGAATAAACGCAAAAGATGGTGTGGGCGTACTGCTGAAATGGATTGT 1434
Query 1420 CTTCCTCGTCTTTCATTTGCCAGGTCCGAGTCAGGCACAAACCCTGTGGAGGACAAGTAT 1479
||||||||| |||||||||||| ||||||||||||||||||||| | ||||||||||||
Sbjct 1435 CTTCCTCGTATTTCATTTGCCAATTCCGAGTCAGGCACAAACCCTATAGAGGACAAGTAT 1494
Query 1480 GAGATAGCCTTGGCACTGAAGGAGTTGGTTAGCAGAGGGATGGCAGCAGAAGC-TGTTTA 1538
|||||||| |||||||||||||| |||||||||||||| |||||||||||||| | |||
Sbjct 1495 GAGATAGCGTTGGCACTGAAGGAATTGGTTAGCAGAGGAATGGCAGCAGAAGCAT-TTTC 1553
Query 1539 TGAAATCAGCACCATGGATCCAAATTTTTTCACACAAAATTCGGGTTTACTTTTCCATCT 1598
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||
Sbjct 1554 CGAAATCAGCACCATGGATCCAGATTTTTTCACACAAAATCCGGGTTTACTTTTCCACCT 1613
Query 1599 TAAGCAGGTTGAATTTCTGAAGCTGGTGAGTGCGGGTGATCACAATGGAGCTCTAAAGGT 1658
||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1614 TAAGCAGGTCGAATTTCTGAAGCTGGTGAGTGCTGGTGATCACAATGGAGCCCTAAAGGT 1673
Query 1659 CGCGTGCTCTCACTTAGGTCCCTTAGCAGCCAATGACCAGTCTTTACTGAAGACATTGAA 1718
||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1674 CGCATGCTTTCACTTAGGTCCCTTAGCCGCCAATGACCAGTCTTTACTGAAGACATTGAA 1733
Query 1719 GGAGACTTTGTTAGTTTTACTCCAACCTGACGGAACCACACCTGGGAAAGATCTGCCTTT 1778
||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||
Sbjct 1734 GGAGACTTTGTTAGTTTTACTCCAACCCGACGGAACCGCACCTGGGAAAGATTTGCCTTT 1793
Query 1779 GAATGATCTGGCAAATATGCTACAGGTTTCTGTCGGTAATAGGCTCGGGATCGAAGAACC 1838
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 GAATGATCTGGCAAATACGCTACAGGTTTCTGTCGGTAATAGGCTCGGGATCGAAGAACC 1853
Query 1839 GAAGCTAATGAAAATAATAAAAGCGACGCTTCACACGCATACCGAGTGGTTCAAGCTTCA 1898
|||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1854 GAAGTTAATGAAAATAATCAAAGCGACGCTTCACACGCATACCGAGTGGTTTAAGCTTCA 1913
Query 1899 GATGTGTAAAGACCGGTTCAATAATCTCCTGAAGATAGACTCTTTGAAAGAAGTGAACAC 1958
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1914 GATGTGTAAAGACCGGTTCAATAATCTCCTGAAGATAGATTCTTTGAAAGAAGTGAACAC 1973
Query 1959 TGATTTGATAAGTGCTATCAAATCAAGATCAAATAAAGATAGCAACACCAACTTGTCTTC 2018
|||||||| ||||||| ||||||| |||||| |||||||||||||| |||||||||||
Sbjct 1974 CGATTTGATTGGTGCTATTAAATCAAAATCAAAGAAAGATAGCAACACAAACTTGTCTTC 2033
Query 2019 TCAAGTGACGACGACATCTTCAAGCACCATGACATCTGAAGATGGTGGAAGCAGCAGCTT 2078
|||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2034 TCAAGTCACGACGACGTCTTCAAGCACCATGACATCAGAAGATGGTGGAAGCAGCAGCTT 2093
Query 2079 GATGATGATGACTCAGACTTCGCCAAGAGAAGCTTTGTGGGAAGAAAGTGCGATTCTTAA 2138
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 2094 GATGATGATGACTCAGACTTTGCCAAGAGAAGCTTTGTGGGAAGAAAGTGCAATTCTTAA 2153
Query 2139 AGTAATGGAATTTCTGGCGATGCCGAGGTCTGATGCAATTCAACTGCTATCACAATACAA 2198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2154 AGTAATGGAATTTCTGGCGATGCCGAGGTCTGATGCAATTCAACTGCTATCACAATACAA 2213
Query 2199 TGGAGACGCTGAGGCTGTGATTCAGCAACTCTTTGGTTAAACTTAAAACCACACCGGACT 2258
|||||||||||||||||||||||||||||||||||| ||||| ||| ||| || |||
Sbjct 2214 TGGAGACGCTGAGGCTGTGATTCAGCAACTCTTTGGGTAAACCCAAA-CCAGACTAGACC 2272
Query 2259 AGAC-T-GAG-TAGAACTGAGGCCGGTTTATTTTAATTTGGATGAGTTATCATTGGTTTA 2315
| | | || | ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2273 -G-CGTAGAACT-GAACTGAGGCCGGTTTATTTTAATTTGGATGAGTTATTATTGGTTTA 2329
Query 2316 TTCATTTCTGCATTTGTACATTAACTTTACACAGACACACTTGTGAAAAAGAAA-TAAAT 2374
|||||||||| |||||||||||||||||||||||||||||||| | |||||||| |||||
Sbjct 2330 TTCATTTCTGTATTTGTACATTAACTTTACACAGACACACTTGAGTAAAAGAAAATAAAT 2389
Query 2375 AAGTTTTATCAATA 2388
| ||||||||||||
Sbjct 2390 A-GTTTTATCAATA 2402
> AT2G14430.1 | Symbols: | transposable element gene | chr2:6134010-6139121
FORWARD LENGTH=5112
Length=5112
Score = 93.5 bits (50), Expect = 9e-18
Identities = 52/53 (98%), Gaps = 0/53 (0%)
Strand=Plus/Minus
Query 320 ACTCCAGATTGATCATTCGCCGGATCCGAAACTCGATTGAATCCGGTGACATT 372
||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 5112 ACTCCAGATTGATCATTCGCCGGATCCGAAACTCGATTGAATCTGGTGACATT 5060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118573687290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5