BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496920
Length=874
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66800.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 857 0.0
> AT5G66800.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G50640.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:26671423-26672514 FORWARD LENGTH=960
Length=960
Score = 857 bits (464), Expect = 0.0
Identities = 590/645 (91%), Gaps = 31/645 (5%)
Strand=Plus/Plus
Query 1 TCTGTCTCTAATGGCATGCTTAGAAATGTACAACTCCAATGGTGGTGGT---ACTCCCAT 57
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 TCTGTCTGTAATGGCATGCTTAGAAATGTACAACTCCAATGGTGGTGGTGGAACTCCCAT 60
Query 58 GAGTCCTAGAATCTCTTTCTCTAACGATTTCGTGGAGATTAAGCCTGAGAAGACCAAGAC 117
||||||||||||||| ||||||||||||||||| ||||||| ||| |||| |||||||||
Sbjct 61 GAGTCCTAGAATCTCCTTCTCTAACGATTTCGTTGAGATTAGGCCAGAGACGACCAAGAC 120
Query 118 GACGAGATCAAGCCCTCTCTCTAAACAAGAGGG---TTCTTCTTC----T--GATAATTT 168
||||||||||||||||||||||||||||||||| ||||||||| | ||||||||
Sbjct 121 GACGAGATCAAGCCCTCTCTCTAAACAAGAGGGTTCTTCTTCTTCTTTTTCAGATAATTT 180
Query 169 CGAGTTCTCTGTCTCAAACTACACAATGATGCCAGCTGATGAACTTTTCTCTAAAGGAAA 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGAGTTCTCTGTCTCAAACTACACAATGATGCCAGCTGATGAACTTTTCTCTAAAGGAAA 240
Query 229 GCTTTTGCCTTTCAAGGAAACCAATCAAGTCCAGAGAACATTGAGAGAAGAGCTTCTCGT 288
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 241 GCTTTTGCCTTTCAAGGAAACCAATCAAGTCCAGAGAACTTTAAGAGAAGAGCTTCTCGT 300
Query 289 TGAAGAAGACGAAGAAGAAGGTCCACGTGATGCTACCAAcatcttctctctcaagccacc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGAAGAAGACGAAGAAGAAGGTCCACGTGATGCTACCAACATCTTCTCTCTCAAGCCACC 360
Query 349 aatcttctcatcatcatcttcttcttct---------AAGGGAAGGTGGAAAGGGCTTTT 399
||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 361 AATCTTCTCATCATCTTCTTCTTCTTCTTCTTCTTCCAAGGGAAGGTGGAAAGGGCTTTT 420
Query 400 GGGCCTTAAGAGGGCCCATATCGGGTCTAAGAACAATGAGGAACGATTTGTTCAT-AT-- 456
||||||||||||||||||| | ||||||||||||||||| || |||||||||||| ||
Sbjct 421 GGGCCTTAAGAGGGCCCATGTTGGGTCTAAGAACAATGAAGAGCGATTTGTTCATCATAT 480
Query 457 GATTAACAACAACAAACAATCTCAGGAAGCAATGGGTGGGAGAGAAGGGTCCAGTTGCAG 516
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 481 GATTAACAACAACAAACAATCTCAGGAAGCAATTGGTGGAAGAGAAGGGTCAAGTTGCAG 540
Query 517 GGAGATGAAGAAGAGTATGTAGAGTTTaaaaacaaaaaaaaaaaaGCTTTCACTTTGTTT 576
|||||||||||||||||||||||| |||||||||||||| |||||||||| ||||
Sbjct 541 GGAGATGAAGAAGAGTATGTAGAGCTTAAAAACAAAAAAG-----GCTTTCACTTGGTTT 595
Query 577 AT-TTATTT-AGGAACATGGTTGCTTCCAAATTTATAAATATTTa 619
| || ||| |||||||||| ||||||||||||| |||| |||||
Sbjct 596 TTGTTTTTTTAGGAACATGGCTGCTTCCAAATTTTTAAAAATTTA 640
Score = 239 bits (129), Expect = 4e-62
Identities = 241/288 (84%), Gaps = 35/288 (12%)
Strand=Plus/Plus
Query 619 aaaaaaaGGCACTTATGTATTGTTGACGGAGATGGTTTATTTCATTTAACTCTTTTCCTC 678
|||||||| ||||||||| ||||||||||||||||||||||||| |||||| |||||| |
Sbjct 676 AAAAAAAGACACTTATGTGTTGTTGACGGAGATGGTTTATTTCA-TTAACTGTTTTCCAC 734
Query 679 TACTCATGTTTCATCGATTCTTCTGAGttttta------tttttc----t-ttttgaa-- 725
||| ||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct 735 TACACATGTTTCATCGATTCTTCTGAGTTTTTATCTTGTTTTTTCTTTTTCTTTTGAAGG 794
Query 726 ---t-a-t-ttagatctatctttgt---c--tttggaatggatgtag----tttttttgG 770
| | | |||||||||||||||| | |||||||||||||||| ||||||||
Sbjct 795 GTGTGAGTATTAGATCTATCTTTGTCGACTATTTGGAATGGATGTAGTTTTTTTTTTTGT 854
Query 771 GGTTGTACAAAAGaaaaaaaaaaaaGAACAGAGTGTGAGTAGTTCAGAAAATTTAATTTC 830
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 855 CGTTGTACAAAAG--AAAAAAAGAAGAACAGAGTGTGAGTAGTTCAGAAAATTTAAGTTC 912
Query 831 CAGTT-TTA---AAAATTGAAGTAACGCATATGTCTTTTGTCTTCGTC 874
||||| || |||||||||| ||||||||||||| |||||||||||
Sbjct 913 CAGTTGTTTTTTAAAATTGAAGCAACGCATATGTCTATTGTCTTCGTC 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42648790803
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5