BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496920 Length=874 Score E Sequences producing significant alignments: (Bits) Value AT5G66800.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 857 0.0 > AT5G66800.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26671423-26672514 FORWARD LENGTH=960 Length=960 Score = 857 bits (464), Expect = 0.0 Identities = 590/645 (91%), Gaps = 31/645 (5%) Strand=Plus/Plus Query 1 TCTGTCTCTAATGGCATGCTTAGAAATGTACAACTCCAATGGTGGTGGT---ACTCCCAT 57 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1 TCTGTCTGTAATGGCATGCTTAGAAATGTACAACTCCAATGGTGGTGGTGGAACTCCCAT 60 Query 58 GAGTCCTAGAATCTCTTTCTCTAACGATTTCGTGGAGATTAAGCCTGAGAAGACCAAGAC 117 ||||||||||||||| ||||||||||||||||| ||||||| ||| |||| ||||||||| Sbjct 61 GAGTCCTAGAATCTCCTTCTCTAACGATTTCGTTGAGATTAGGCCAGAGACGACCAAGAC 120 Query 118 GACGAGATCAAGCCCTCTCTCTAAACAAGAGGG---TTCTTCTTC----T--GATAATTT 168 ||||||||||||||||||||||||||||||||| ||||||||| | |||||||| Sbjct 121 GACGAGATCAAGCCCTCTCTCTAAACAAGAGGGTTCTTCTTCTTCTTTTTCAGATAATTT 180 Query 169 CGAGTTCTCTGTCTCAAACTACACAATGATGCCAGCTGATGAACTTTTCTCTAAAGGAAA 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CGAGTTCTCTGTCTCAAACTACACAATGATGCCAGCTGATGAACTTTTCTCTAAAGGAAA 240 Query 229 GCTTTTGCCTTTCAAGGAAACCAATCAAGTCCAGAGAACATTGAGAGAAGAGCTTCTCGT 288 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 241 GCTTTTGCCTTTCAAGGAAACCAATCAAGTCCAGAGAACTTTAAGAGAAGAGCTTCTCGT 300 Query 289 TGAAGAAGACGAAGAAGAAGGTCCACGTGATGCTACCAAcatcttctctctcaagccacc 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TGAAGAAGACGAAGAAGAAGGTCCACGTGATGCTACCAACATCTTCTCTCTCAAGCCACC 360 Query 349 aatcttctcatcatcatcttcttcttct---------AAGGGAAGGTGGAAAGGGCTTTT 399 ||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 361 AATCTTCTCATCATCTTCTTCTTCTTCTTCTTCTTCCAAGGGAAGGTGGAAAGGGCTTTT 420 Query 400 GGGCCTTAAGAGGGCCCATATCGGGTCTAAGAACAATGAGGAACGATTTGTTCAT-AT-- 456 ||||||||||||||||||| | ||||||||||||||||| || |||||||||||| || Sbjct 421 GGGCCTTAAGAGGGCCCATGTTGGGTCTAAGAACAATGAAGAGCGATTTGTTCATCATAT 480 Query 457 GATTAACAACAACAAACAATCTCAGGAAGCAATGGGTGGGAGAGAAGGGTCCAGTTGCAG 516 ||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| Sbjct 481 GATTAACAACAACAAACAATCTCAGGAAGCAATTGGTGGAAGAGAAGGGTCAAGTTGCAG 540 Query 517 GGAGATGAAGAAGAGTATGTAGAGTTTaaaaacaaaaaaaaaaaaGCTTTCACTTTGTTT 576 |||||||||||||||||||||||| |||||||||||||| |||||||||| |||| Sbjct 541 GGAGATGAAGAAGAGTATGTAGAGCTTAAAAACAAAAAAG-----GCTTTCACTTGGTTT 595 Query 577 AT-TTATTT-AGGAACATGGTTGCTTCCAAATTTATAAATATTTa 619 | || ||| |||||||||| ||||||||||||| |||| ||||| Sbjct 596 TTGTTTTTTTAGGAACATGGCTGCTTCCAAATTTTTAAAAATTTA 640 Score = 239 bits (129), Expect = 4e-62 Identities = 241/288 (84%), Gaps = 35/288 (12%) Strand=Plus/Plus Query 619 aaaaaaaGGCACTTATGTATTGTTGACGGAGATGGTTTATTTCATTTAACTCTTTTCCTC 678 |||||||| ||||||||| ||||||||||||||||||||||||| |||||| |||||| | Sbjct 676 AAAAAAAGACACTTATGTGTTGTTGACGGAGATGGTTTATTTCA-TTAACTGTTTTCCAC 734 Query 679 TACTCATGTTTCATCGATTCTTCTGAGttttta------tttttc----t-ttttgaa-- 725 ||| ||||||||||||||||||||||||||||| |||||| | ||||||| Sbjct 735 TACACATGTTTCATCGATTCTTCTGAGTTTTTATCTTGTTTTTTCTTTTTCTTTTGAAGG 794 Query 726 ---t-a-t-ttagatctatctttgt---c--tttggaatggatgtag----tttttttgG 770 | | | |||||||||||||||| | |||||||||||||||| |||||||| Sbjct 795 GTGTGAGTATTAGATCTATCTTTGTCGACTATTTGGAATGGATGTAGTTTTTTTTTTTGT 854 Query 771 GGTTGTACAAAAGaaaaaaaaaaaaGAACAGAGTGTGAGTAGTTCAGAAAATTTAATTTC 830 |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 855 CGTTGTACAAAAG--AAAAAAAGAAGAACAGAGTGTGAGTAGTTCAGAAAATTTAAGTTC 912 Query 831 CAGTT-TTA---AAAATTGAAGTAACGCATATGTCTTTTGTCTTCGTC 874 ||||| || |||||||||| ||||||||||||| ||||||||||| Sbjct 913 CAGTTGTTTTTTAAAATTGAAGCAACGCATATGTCTATTGTCTTCGTC 960 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42648790803 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5