BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496923
Length=2142
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66770.1 | Symbols: | GRAS family transcription factor | ch... 2752 0.0
> AT5G66770.1 | Symbols: | GRAS family transcription factor |
chr5:26660600-26662894 FORWARD LENGTH=2295
Length=2295
Score = 2752 bits (1490), Expect = 0.0
Identities = 1739/1855 (94%), Gaps = 34/1855 (2%)
Strand=Plus/Plus
Query 60 AGAATGGCTTACATGTGCACTGATAGTGGCAATCTAATGGCTATTGCTCAACAAGTCATC 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGAATGGCTTACATGTGCACTGATAGTGGCAATCTAATGGCTATTGCTCAACAAGTCATC 180
Query 120 AAACAGAAGCAGCAACAAcatcatcatcatcatcatcatcatcaAGACCATCAGCTTTTT 179
|||||||||||||||||| | || || || || || |||||||||||||||||| |||||
Sbjct 181 AAACAGAAGCAGCAACAAGAACAACAACAGCAGCAACATCATCAAGACCATCAGATTTTT 240
Query 180 GGTATCAACCCTTTGTCTCTTAACCCATGGCCCAACACCTCCCTCGCTTTTGGCCTTTCC 239
||||| || |||||||||||||||||||||||||| || ||||||| ||||| |||||
Sbjct 241 GGTATTAATCCTTTGTCTCTTAACCCATGGCCCAATACTTCCCTCGGGTTTGGGCTTTCA 300
Query 240 GGTTCGGCTTTTCCCGACCCCTTTCAAGTTACCGGCGGCGGAGATTCCAACGATCCTGCC 299
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 301 GGTTCGGCTTTTCCCGACCCGTTTCAAGTTACCGGCGGCGGAGATTCCAACGATCCTGGC 360
Query 300 TTTCCTTTTCCTAACTTAGACCACCACCACGCCACATCCGCCGGCGGTGGGTTTAGGCTA 359
|||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| ||
Sbjct 361 TTTCCTTTTCCTAACTTAGACCACCACCACGCCACAACCACCGGCGGTGGGTTCAGGTTA 420
Query 360 TCTGATTTCGGCGGTGGAACCGGCGGTGGTGAGTTTGAGTCCGACGAGTGGATGGAGACT 419
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 421 TCTGATTTCGGCGGTGGAACCGGCGGCGGCGAGTTTGAGTCCGACGAGTGGATGGAGACT 480
Query 420 CTTATTAGCGGTGGAGA--------C-G-C--TCCTGATTGTGACACGTGGCATAATAAT 467
||||| ||||||||||| | | | ||||||||||||||| |||||| |||||
Sbjct 481 CTTATCAGCGGTGGAGACTCCGTTGCAGACGGTCCTGATTGTGACACCTGGCATGATAAT 540
Query 468 CCCGATTACGTAATCTACGGTCCTGATCCTTTCGATACTTACCCGAGTCGACTCAGTGTC 527
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 CCCGATTACGTAATCTACGGTCCTGATCCATTCGATACTTACCCGAGTCGACTCAGTGTC 600
Query 528 CAACCGTCAGATCTCAA-C---TCGTCG--A-GTCCACTTCCTCATCCTCCGCCGACCTT 580
|||||||||||||| || | || | | | ||| | ||| | |||||||||||||||
Sbjct 601 CAACCGTCAGATCTAAACCGAGTCATTGACACGTCGA-GTCCGCTTCCTCCGCCGACCTT 659
Query 581 GTGGCCTCCTCCTTCCCCATTATCGATTCCTCCGCTTCCTCATGACTCACCAACCAAAGA 640
|||||||||| |||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 660 GTGGCCTCCTTCTTCGCCATTATCGATTCCTCCGCTTACTCATGAGTCACCAACCAAAGA 719
Query 641 AGATCCGGAGACTAACGACTCCGAAGACGATGACTTCGACCTAGAACCTCCTCTCCTCAG 700
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 720 AGATCCAGAGACTAACGACTCCGAAGACGATGACTTCGACCTAGAACCACCTCTCCTCAA 779
Query 701 AGCTATCTACGACTGTGCACGGATCTCAGACTCTGACCCTAACGAAGCTTCGAAGACGCT 760
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 AGCTATATACGACTGTGCACGGATCTCAGACTCTGACCCTAACGAAGCTTCCAAGACGCT 839
Query 761 TGTTCAAATCCGAGAATCTGTATCGGAGCTAGGTGATCCGACGGAGCGAGTGGGC-TTTT 819
| |||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 840 TCTTCAGATCCGAGAATCTGTATCGGAGCTAGGTGATCCGACGGAGCGAGT-TGCATTTT 898
Query 820 ACTTCACGGAAGCTCTCTCCAACAGATTATCTCCTGATTCGCCGGCGACGTCG---TCGT 876
|||||||||||||||||||||||||| | |||||| ||||||||||||||||| || |
Sbjct 899 ACTTCACGGAAGCTCTCTCCAACAGACTGTCTCCTAATTCGCCGGCGACGTCGTCTTCTT 958
Query 877 CTTCGTCTACGGAGGATTTAATCTTATCTTATAAAACCCTAAACGACGCATGTCCATACT 936
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 959 CTTCATCTACGGAGGATTTAATCTTATCTTATAAAACCCTAAACGACGCTTGTCCTTACT 1018
Query 937 CCAAATTCGCACATTTGACGGCGAATCAAGCGATTCTAGAAGCAACGGAGAATTCAAACA 996
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 1019 CCAAATTCGCACATTTGACGGCGAATCAAGCGATTCTAGAAGCGACGGAGAAGTCGAACA 1078
Query 997 AGATTCACATCGTCGATTTTGGAATCGTTCAAGGTATTCAATGGCCTGCTCTTCTTCAAG 1056
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1079 AGATTCACATCGTCGATTTTGGAATCGTTCAAGGTATACAATGGCCTGCTCTTCTTCAAG 1138
Query 1057 CTCTAGCTACTCGTTCTTCTGGTAAACCCACTCAAATCCGGGTCTCGGGTATACCCGCTC 1116
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CTCTAGCTACTCGTACTTCTGGTAAACCCACTCAAATCCGGGTCTCGGGTATACCCGCTC 1198
Query 1117 CATCTCTCGGTGAATCTCCGGAACCGTCGTTAATCGCCACCGGAAACCGCCTCCGTGATT 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CATCTCTCGGTGAATCTCCGGAACCGTCGTTAATCGCCACCGGAAACCGCCTCCGTGATT 1258
Query 1177 TCGCCAAGGTCCTGGATCTGAATTTCGATTTCATCCCAATTCTCACTCCCATACATTTAC 1236
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCGCCAAGGTTCTGGATCTGAATTTCGATTTCATCCCAATTCTCACTCCCATACATTTAC 1318
Query 1237 TAAACGGGTCAAGTTTCCGGGTCGACCCGGATGAAGTACTAGCCGTGAATTTCATGCTCC 1296
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1319 TTAACGGGTCAAGTTTCCGGGTCGACCCGGATGAAGTACTGGCCGTGAATTTCATGCTCC 1378
Query 1297 AGCTCTACAAACTACTCGACGAGACACCGACCATCGTTGACACCGCCCTGA-GGCTCGCC 1355
||||||||||| ||||||||||||| ||||| || ||||||||||| || | ||||||||
Sbjct 1379 AGCTCTACAAATTACTCGACGAGACGCCGACGATAGTTGACACCGCACT-ACGGCTCGCC 1437
Query 1356 AAATCGTTAAACCCGAGGGTCGTCACTCTCGGAGAATACGAAGTGAGCTTAAACCGGGTC 1415
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 AAATCGTTGAACCCGAGGGTCGTCACTCTCGGAGAATACGAAGTGAGCTTAAACCGGGTC 1497
Query 1416 GGTTTCGCTAACCGGGTGAAA-AACGCTCTTCAATTCTATTCCGCGGTTTTCGAATCCCT 1474
||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1498 GGTTTCGCTAACCGGGT-AAAGAACGCGCTTCAATTCTATTCCGCGGTTTTCGAATCCCT 1556
Query 1475 CGAACCGAACTTGGGGCGTGATTCGGAAGAGAGAGTGAGAGTTGAGCGAGAGTTGTTCGG 1534
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1557 TGAACCGAACTTGGGGCGTGATTCGGAGGAGAGAGTGAGAGTTGAGCGAGAGTTGTTCGG 1616
Query 1535 CCGGAGAATATCAGGTTTGATTGGACCGGAGAAAACCGGAATCCATAGAGAAAGAATGGA 1594
||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1617 CCGGAGAATCTCGGGTTTGATTGGACCGGAGAAAACCGGAATTCATAGAGAAAGAATGGA 1676
Query 1595 AGAGAAAGAGCAATGGCGGGTATTAATGGAGAATGCCGGTTTTGAATCGGTTAAGCTGAG 1654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 AGAGAAAGAGCAATGGCGGGTATTAATGGAGAATGCCGGTTTTGAATCGGTTAAGCTGAG 1736
Query 1655 TAATTACGCAGTGAGCCAAGCCAAGATTCTTTTGTGGAATTACAATTACAGCAATTTGTA 1714
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1737 TAATTACGCAGTGAGCCAAGCGAAGATTCTATTGTGGAATTACAATTACAGCAATTTGTA 1796
Query 1715 TTCAATTGTTGAATCTAAGCCTGGCTTCATCTCTTTGGCCTGGAACGATTTACCTCTCCT 1774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 TTCAATTGTTGAATCTAAGCCTGGCTTCATCTCTTTGGCCTGGAACGATTTACCTCTCCT 1856
Query 1775 CACTCTTTCTTCTTGGCGATAACCGAACC-----GATCCGGTATTCTTAGTTTTGTTTTC 1829
|||||||||||| ||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1857 CACTCTTTCTTCCTGGCGATAACCAAACCAAACCGATCCGGTATTCTTAGTTTTGTTTTG 1916
Query 1830 TTTCCAATGTTATTTTTGGTTAGACAAATATTTAATTGTTAATATACTCCATGGT 1884
||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1917 TTTTCAATGTTATTTTTGGTTAGACAAATATTCAATTGTTAATATACTCCGTGGT 1971
Score = 272 bits (147), Expect = 9e-72
Identities = 229/264 (87%), Gaps = 23/264 (9%)
Strand=Plus/Plus
Query 1896 GGTAGGTTTTGAATTCTCTGAACCTTATGTGttttttttGGTAACATC-TTTGGATTTGT 1954
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 2019 GGTAGGTTTTGAATTCTCTGAACCTTATGTG--TTTTTTGGTAACATCATTTGGATTTGT 2076
Query 1955 GAAGTTGGTTTAAACAGCTGCTCTTAGTCTTGTTGTTTTTCTCTTTAGATAATTTAAACT 2014
||| | |||||||| | ||| |||||||||||||| ||||||| ||||||||||||||||
Sbjct 2077 GAACTAGGTTTAAA-AACTGGTCTTAGTCTTGTTG-TTTTCTCATTAGATAATTTAAACT 2134
Query 2015 GGTTTGCTT-TTT-T----------A-A--GTGACCGGTTCTGGTCATTTGTTTAAAGAT 2059
||||||||| ||| | | | |||||||||||||||||| ||||| | |||
Sbjct 2135 GGTTTGCTTCTTTATTTTTGGTTGGATAAAGTGACCGGTTCTGGTCATCTGTTTGA-GAT 2193
Query 2060 GTAATTATTTTTTCATAAGATTAGGAAGGTGAAAGCCAA-TAATATTTGTAACTACTCTT 2118
||||||| | |||||||| ||||||||| |||||||||| || |||||||||||||||||
Sbjct 2194 GTAATTACTATTTCATAAAATTAGGAAGTTGAAAGCCAAATA-TATTTGTAACTACTCTT 2252
Query 2119 TTATTTGTAATTTTGCTCAGAAAA 2142
||||||||||||||||||| ||||
Sbjct 2253 TTATTTGTAATTTTGCTCAAAAAA 2276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106224353220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5