BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496927
Length=2171
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66730.1 | Symbols: | C2H2-like zinc finger protein | chr5:... 2771 0.0
AT3G50700.1 | Symbols: AtIDD2, IDD2 | indeterminate(ID)-domain ... 592 6e-168
AT2G02080.1 | Symbols: AtIDD4, IDD4 | indeterminate(ID)-domain ... 279 6e-74
> AT5G66730.1 | Symbols: | C2H2-like zinc finger protein | chr5:26641652-26644402
REVERSE LENGTH=2284
Length=2284
Score = 2771 bits (1500), Expect = 0.0
Identities = 1761/1882 (94%), Gaps = 37/1882 (2%)
Strand=Plus/Plus
Query 254 AGAGAGGTCAGAGAGAGAGTTATCAGAAAAGTTTGGTGGCGGAAAGGGGaaaaaaaaGAG 313
||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||
Sbjct 306 AGAGAGGTCAGAGAGTGAGTTATCAGAAAAGTTTGGTGGCGGAAAGGGG---AAAAGGAG 362
Query 314 ATTTTTACGAAAAGCAGATTGACTGGTAGCTGAAGAagagagagagagagagagagaCTA 373
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 363 ATTTTTACGAAAAGCAGATTGACTGGTAGCTGAAGAAGAGAGAGAGA-A-AGAGAGACTA 420
Query 374 AACAGAGT---AGGAGGATGATAAACCCTAGATTGAGCTGAGCTGAGATTTGCTTCtttt 430
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 421 AACAGAGTAGGAGGAGGATGATAAACCCTAGATTGAGCTGAGCTGAGATTTGCTTC---T 477
Query 431 ttttttttGTGAAGGGGGAAAAAAGATT-GAATTTAGTATCTTTTTTACACATGCCGGTT 489
| ||||||| | ||||||| |||||||||||| ||| | |||||||||||
Sbjct 478 TCCTTTTTGT-------GTTCAAAGATTGGAATTTAGTATC--TTTGAAACATGCCGGTT 528
Query 490 GATTTAGATAATTCCTCTACAGTTTCCGGCGATGCAAGCGTCTCATCGACCGGAAACCAA 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 GATTTAGATAATTCCTCTACAGTTTCCGGCGATGCAAGCGTCTCATCGACCGGAAACCAA 588
Query 550 AATCAAACTCCCAAATCCGTCGGGAAGAAGAAACGGAATCTTCCCGGAATGCCTGATCCA 609
|||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 589 AATCTAACTCCTAAATCCGTCGGGAAGAAGAAACGGAATCTTCCTGGAATGCCTGATCCA 648
Query 610 GACGCGGAAGTGATAGCTTTGTCACCTAAAACACTTATGGCAACGAATCGATTCGTTTGC 669
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 GACGCTGAAGTGATAGCTTTGTCACCTAAAACACTTATGGCAACGAATCGATTCGTTTGC 708
Query 670 GAAATCTGTAACAAAGGTTTTCAACGTGACCAGAATCTTCAGCTTCATCGTCGTGGTCAC 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 GAAATCTGTAACAAAGGTTTTCAACGTGACCAGAATCTTCAGCTTCATCGTCGTGGTCAC 768
Query 730 AATCTTCCATGGAAACTTAGACAGAGATCGAGTAAAGAAGTGAGGAAGAAGGTTTATGTT 789
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 769 AATCTTCCATGGAAACTTCGACAGAGATCGACTAAAGAAGTGAGGAAGAAGGTTTATGTT 828
Query 790 TGTCCTGTTTCTGGTTGTGTTCATCATGACCCGTCACGTGCTCTTGGAGATCTTACTGGA 849
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 829 TGTCCTGTTTCTGGCTGTGTTCATCATGACCCTTCACGTGCTCTTGGAGATCTTACTGGA 888
Query 850 ATCAAGAAACACTTTTGTCGGAAACACGGTGAGAAGAAATTCAAGTGTGAGAAATGTTCT 909
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 889 ATCAAGAAACACTTTTGTCGGAAACACGGCGAGAAGAAATGGAAGTGTGAGAAATGTTCT 948
Query 910 AAGAAGTATGCTGTTCAATCAGATTGGAAAGCTCACTCGAAGATTTGTGGCACTAAGGAG 969
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 949 AAGAAGTATGCTGTTCAATCAGATTGGAAAGCTCATTCGAAGATTTGTGGCACCAAGGAG 1008
Query 970 TATAAATGCGATTGTGGAACTCTGTTTTCTAGGAGAGATAGCTTTATAACGCATAGAGC- 1028
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 TATAAATGCGATTGTGGAACTCTGTTTTCTAGGAGAGATAGCTTTATAACGCATAGAGCC 1068
Query 1029 TTTCTGTGATGCGTTGGCTGAAGAGAGTGCGAAGAATCATACTCAAAGCAAGAAACTTTA 1088
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TTT-TGTGATGCCTTGGCTGAAGAGAGTGCGAAGAATCATACTCAAAGCAAGAAACTTTA 1127
Query 1089 TCCAGAAACTGTCAAAAGGAAGAATCCTGAATTTGAGCAGAAATCCCCACCCGTTGTTGA 1148
|||||||||||||| ||||||||||||||| ||||||| ||||| ||| | | ||||||
Sbjct 1128 TCCAGAAACTGTCACTAGGAAGAATCCTGAAATTGAGCAAAAATCTCCAGCAGCTGTTGA 1187
Query 1149 ATCTTCTCCGTCGCTACCGCCTTCTTCTCCGCCATCGGTTGCTCTAGCTCCGGCACCAGC 1208
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1188 GTCTTCTCCGTCATTACCGCCTTCTTCTCCGCCATCGGTTGCTATAGCTCCGGCACCGGC 1247
Query 1209 TATTTCGGTTGAGTCTGAGCCTGTCAAAATCATATCTTCCTCGGTTTTGCCGATTCAGAA 1268
||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1248 TATTTCGGTTGAGACTGAGTCTGTCAAAATCATATCTTCCTCTGTTTTGCCGATTCAGAA 1307
Query 1269 TTCTCCAGAATCTCCAGAAAACAACAATCACCCTGATGTCATAATCGAGGAAGCTTCAAG 1328
|||||||||||||| ||||||||||||||| ||||| ||||| || ||||||||||||||
Sbjct 1308 TTCTCCAGAATCTCAAGAAAACAACAATCATCCTGAAGTCATTATTGAGGAAGCTTCAAG 1367
Query 1329 AACGATCGGTTTCAATGTTAGCTCATCCGATCTATGCAACGATCACAGTAA-A----T-- 1381
||||||||| ||||||||||||||||| |||||| |||| ||||||||||| | |
Sbjct 1368 AACGATCGGGTTCAATGTTAGCTCATCGGATCTAAGCAATGATCACAGTAACAACAATGG 1427
Query 1382 ---A--CGCAGGCTTGTTTGTATCATCAACAGCTTCGCCTAGTTTATATGCTTCCCCAAC 1436
| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1428 TGGATACGCAGGTTTGTTTGTATCATCAACAGCTTCGCCTAGTTTATATGCTTCCTCAAC 1487
Query 1437 CGCTTCTCCAAGTCTATTCGCACCATCTTCCGCCTTGGAACCCATCTCTCTCCGTCTCTC 1496
||||||||||||||||||||||||||| ||| || ||||||||||||||||| |||||||
Sbjct 1488 CGCTTCTCCAAGTCTATTCGCACCATCGTCCTCCATGGAACCCATCTCTCTCTGTCTCTC 1547
Query 1497 GACGAATCCTTCTTTGTTCGGACCAACAATACAAGATCCGCCACATTTCCTAACTCCTCT 1556
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1548 GACGAACCCTTCTTTGTTCGGACCAACAATACGAGATCCGCCACATTTCCTAACTCCTCT 1607
Query 1557 TCCTCCTCAACCGGCAATGTCAGCTACCGCGTTGCTCCAGAAAGCTGCCCAAATGGGTTC 1616
|||||||||||||||||||||||||| || |||||||| |||||||| |||||||||||
Sbjct 1608 CCCTCCTCAACCGGCAATGTCAGCTACTGCATTGCTCCAAAAAGCTGCACAAATGGGTTC 1667
Query 1617 CACGGGATCAGGAGGTTCGTTGCTTCGCGGGTTAGGCATTGTTTCAACTACTTCTTCATC 1676
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1668 CACGGGATCAGGAGGTTCGTTGCTTCGCGGGTTAGGCATAGTTTCAACTACTTCTTCATC 1727
Query 1677 AATGGAACTCAGCAATCACGATGCGTTGTCATTAGCTCCTGGTCTTGGACTTGGACTACC 1736
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1728 TATGGAACTCAGCAATCATGATGCATTGTCATTAGCTCCTGGTCTTGGACTTGGACTACC 1787
Query 1737 TTGTAGCAGTGGTGGTAGCGGATCGGGTCTGAAAGAGCTCATGATGGGGAATTCGTCGGT 1796
||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1788 TTGTAGCAGCGGTGGTAGCGGATCGGGTCTAAAAGAGCTCATGATGGGGAATTCATCGGT 1847
Query 1797 GTTTGGTCCCAAACAGACGACACTTGACTTTCTCGGATTAGGAAGAGCTGTTGGTAATGG 1856
||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1848 GTTTGGTCCGAAACAGACGACACTAGACTTTCTTGGATTAGGAAGAGCTGTTGGTAATGG 1907
Query 1857 CGGTAATACCGGAGGCGGATTGTCTGCTCTGTTAACTTCTATAGGCGGTGGTGGTGGAAT 1916
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1908 TGGTAATACCGGAGGTGGATTGTCTGCTCTGTTAACTTCTATAGGTGGTGGAGGTGGAAT 1967
Query 1917 AGATCTGTTTGGATCTGGGGAGTTTTCAGGGAAAGACATTGGAAGAAGTTCGTAAGCGAG 1976
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1968 CGATCTGTTTGGATCAGGGGAGTTTTCAGGCAAAGACATTGGAAGAAGTTCGTAAGAGAG 2027
Query 1977 ACATAAGGCATGAACGTAGTAGAACAGTGTAGTATATAGTTTATCAAGTTTGTATCAGGT 2036
||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 2028 ACAAAAGGCATGAACGTAGTAGACCAGTGTAGTATATAGTTCATCAAGTTTGTTTCAGGT 2087
Query 2037 TTTAGATCTTTTGGTATCT-GTTTTAGTGAAAGCTTTAGTTTTATTCCCAATGTGGGTTT 2095
||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 2088 TTTAGATGTTTTGGTATCTTGTTTTAGTGAAAGCTTTAGTTTTATTCCCAA-GTGGGTTT 2146
Query 2096 TCTCTCAAGTACATAAATCTCC 2117
||||||||||||||||||||||
Sbjct 2147 TCTCTCAAGTACATAAATCTCC 2168
Score = 322 bits (174), Expect = 9e-87
Identities = 241/270 (89%), Gaps = 17/270 (6%)
Strand=Plus/Plus
Query 1 GAAGGCTCCTTTTTCTTGGACAAGCC--a-aaaaa-aaaaaaaa--TTGAAGCTTTCACA 54
|||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||
Sbjct 1 GAAGGCTCCTTTTTCTTGGACAAGCCAAAGAAAAAGAAAAAAAAGGTTGAAGCTTTCACA 60
Query 55 CAAAGTCTCTCACACAAGCCGCCTTA-TTTATCTT-CGGTGATTCTTCAGAGAGAAACAA 112
||||||||| |||||||||||||||| ||| | || ||||||||||||||||||||||||
Sbjct 61 CAAAGTCTCACACACAAGCCGCCTTATTTTTTTTTCCGGTGATTCTTCAGAGAGAAACAA 120
Query 113 GCCGGAAGTAGTAAGGATAACTCATCTCCGGTGGAATCTCAGCCGTTGGATCAGATCGGT 172
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 121 GCCGGAAGTAGTAAGGATAACTCGTCTCCGGTGAAATCTCAGCCGTTGGATCAGATCGGT 180
Query 173 ------TG-ATAAAAGAAGCGTGTGGAGAAGAGAG--TCTGGGTTAAATGATTATGGGAT 223
|| |||||||| ||||||||||||||||| ||||||||||||||||| | |||
Sbjct 181 GGACGGTGGATAAAAGATGCGTGTGGAGAAGAGAGAGTCTGGGTTAAATGATTAAGAGAT 240
Query 224 CTCTTGGGTAATGAAGAGTTGATTTCTTTT 253
||||||||||||||| ||||||| ||||
Sbjct 241 TTCTTGGGTAATGAAGTTTTGATTTTTTTT 270
> AT3G50700.1 | Symbols: AtIDD2, IDD2 | indeterminate(ID)-domain
2 | chr3:18840411-18842950 FORWARD LENGTH=2014
Length=2014
Score = 592 bits (320), Expect = 6e-168
Identities = 525/621 (85%), Gaps = 25/621 (4%)
Strand=Plus/Plus
Query 481 ATGCCGGTTGATTTAGATAATTCCTCTACAGTTTCCGGCGATGCAA--G---C-GTCTCA 534
|||||||| ||||||||||| ||||| ||||||||||| || |||| | | |||||
Sbjct 535 ATGCCGGTAGATTTAGATAACTCCTCCACAGTTTCCGGTGAAGCAAGTGTTTCAATCTCA 594
Query 535 TCGACCGGAAACCAAAATCAAACTCCCAAA-TCCGTCGGGAAGAAGAAACGGAATCTTCC 593
|| |||||||||||||| | ||| ||||| ||| ||| ||||||||||| || | |||
Sbjct 595 TCCACCGGAAACCAAAA-CCCACTTCCAAACTCCACCGGAAAGAAGAAACGTAA-CCTCC 652
Query 594 C-GGAATGCCTGATCCAGACG-CGGAAGTGATAGCTTTGTCACCTAAAACACTTA-TGGC 650
| || |||||||||||||| | | ||||| |||||||| ||||| |||||| ||| | ||
Sbjct 653 CTGGCATGCCTGATCCAGA-GTCAGAAGTTATAGCTTTATCACCAAAAACA-TTACTAGC 710
Query 651 AACGAATC-GATTCGTTTGCGAAATCTGTAACAAAGGTTTTCAACGTGACCAGAATCTTC 709
||| || | |||| ||||| ||||||||||||||||| |||||| | |||||||||||||
Sbjct 711 AAC-AAACAGATTTGTTTGTGAAATCTGTAACAAAGGGTTTCAAAGAGACCAGAATCTTC 769
Query 710 AGCTTCATCGTCGTGGTCACAATCTT-CCATGGAAACTTAGACAGAGATCGAGTAAAGAA 768
| |||||||||||||| |||||| || |||||||| ||| | |||| ||| | ||||||
Sbjct 770 AACTTCATCGTCGTGGACACAAT-TTACCATGGAAGCTTCGTCAGAAATCAAACAAAGAA 828
Query 769 GTGAGGAAGAAGGTTTATGTTTGTCCTG-TTTCTGGTTGTGTTCATCATGACCCGTCACG 827
|||| ||| || || ||||||||||||| | | ||||||||||||| ||||| |||||
Sbjct 829 GTGAAGAAAAAAGTCTATGTTTGTCCTGAAGT-TAGTTGTGTTCATCACGACCCTTCACG 887
Query 828 TGCTCTT-GGAGATCTTACTGGAATCAAGAAACACTTTTGTCGGAAACACGGTGAGAAGA 886
|||| || |||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 888 TGCT-TTAGGAGATCTAACTGGAATCAAGAAACACTTTTGTCGGAAACATGGTGAGAAGA 946
Query 887 AATTCAAGTGTGAGAAATGTTCTAAGAAGTATGCTGTTCAATCAGATTGGAAAGCTCACT 946
| | || ||||| |||||||||||||| || ||||||||||| |||||||||||||| |
Sbjct 947 AGTGGAAATGTGATAAATGTTCTAAGAAATACGCTGTTCAATCTGATTGGAAAGCTCATT 1006
Query 947 CGAAGATTTGTGGCACTAAGGAGTATAAATGCGATTGTGGAACTCTGTTTTCTAGGAGAG 1006
| ||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| |
Sbjct 1007 CCAAGATTTGTGGTACTAAAGAGTATAAATGTGATTGTGGTACTCTGTTTTCTAGGAGGG 1066
Query 1007 ATAGCTTTATAACGCATAGAGCTTTCTGTGATGCGTTGGCTGAAGAGAGTGCGA-A-GA- 1063
|||| |||||||||||||||||||| |||||||| ||||||||||| | ||||| | |
Sbjct 1067 ATAGTTTTATAACGCATAGAGCTTTTTGTGATGCTTTGGCTGAAGAAAATGCGAGAAGTC 1126
Query 1064 ATCATACTCAAAGCAAGAAAC 1084
|||||| ||| || |||||||
Sbjct 1127 ATCATAGTCAGAGTAAGAAAC 1147
Score = 76.8 bits (41), Expect = 8e-13
Identities = 44/45 (98%), Gaps = 1/45 (2%)
Strand=Plus/Plus
Query 304 aaaaaaaGAGA-TTTTTACGAAAAGCAGATTGACTGGTAGCTGAA 347
||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 315 AAAAAAAGAGATTTTTTACGAAAAGCAGATTGACTGGTAGCTGAA 359
> AT2G02080.1 | Symbols: AtIDD4, IDD4 | indeterminate(ID)-domain
4 | chr2:518159-521707 REVERSE LENGTH=1844
Length=1844
Score = 279 bits (151), Expect = 6e-74
Identities = 375/482 (78%), Gaps = 19/482 (4%)
Strand=Plus/Plus
Query 592 CCCGGAATGCCTGATCCAGACGCGGAAGTGATAGCTTTGTCACCTAAA-ACACTTATGGC 650
||||||| || |||| || ||||||||| |||| || || || ||| ||||| |||||
Sbjct 302 CCCGGAAACCCAAATCCTGATGCGGAAGTGGTAGCATTATCTCC-AAAGACACTAATGGC 360
Query 651 AACGAATC-GATTCGTTTGCGAAATCTGTAACAAAGGTTTTCAACGTGACCAGAATCTTC 709
|| || | ||||| | ||||| | ||||||||||| |||||| | || || ||||| |
Sbjct 361 TAC-AAACAGATTCATATGCGATGTATGTAACAAAGGGTTTCAAAGAGAACAAAATCTAC 419
Query 710 AGCTTCATCGTCGTGGTCACAATCTTCCATGGAAACTTAGACAGAGATCGAGTAAAGAAG 769
||||||| || | || |||||||| |||||||| || | ||| | ||| | |||||||
Sbjct 420 AGCTTCACCGAAGAGGACACAATCTCCCATGGAAGCTGAAACAAAAATCAACCAAAGAAG 479
Query 770 TGAGGAAGAAGGTTTATGTTTGTCCTGTTTC-TGGTTGTGTTCATCATGACCCGTCACGT 828
||| || ||| || ||| ||||||| | | | || ||||| |||||||||||||||
Sbjct 480 TGAAGAGGAAAGTGTATCTTTGTCCGGAGCCAACG-TGCGTTCACCATGACCCGTCACGT 538
Query 829 GCTCTTGGAGATCTTACTGGAATCAAGAAACACTT-TTGTCGGAAACACGGTGAGAAGAA 887
||||| ||||| || || ||||||||||| || || || || ||||| || || |||||
Sbjct 539 GCTCTCGGAGACCTCACCGGAATCAAGAAGCA-TTATTACCGTAAACATGGCGAAAAGAA 597
Query 888 ATTCAAGTGTGAGAAATGTTCTAAGAAG-TATGCTGTTCAATCAGATTGGAAAGCTCACT 946
| || |||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 598 GTGGAAATGTGAGAAATGTTCTAAG-CGTTACGCTGTTCAATCAGATTGGAAAGCTCACT 656
Query 947 CGAAGATTTGTGGCACTAAGGAGTATAAATGCGATTGTGGAACTC-TGTTTTCTAGGA-G 1004
| |||| |||||| ||||| |||||| ||| || ||||| || | | || ||||| | |
Sbjct 657 CTAAGACTTGTGGTACTAAAGAGTATCGATGTGACTGTGGTAC-CATCTTCTCTAG-ACG 714
Query 1005 AGATAGCTTT-ATAACGCATAGAGCTTTCTGTGATGCGTTGGCTG-AAGAGAGTGCGAAG 1062
||||| || || |||||||| |||||||| ||||| ||| | |||||| ||| |||
Sbjct 715 TGATAG-TTACATCACGCATAGGGCTTTCTGCGATGCATTGA-TACAAGAGACTGC-AAG 771
Query 1063 AA 1064
||
Sbjct 772 AA 773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107680169025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5