BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496930
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66710.1 | Symbols: | Protein kinase superfamily protein | ... 1977 0.0
> AT5G66710.1 | Symbols: | Protein kinase superfamily protein
| chr5:26636609-26638794 FORWARD LENGTH=1448
Length=1448
Score = 1977 bits (1070), Expect = 0.0
Identities = 1221/1293 (94%), Gaps = 13/1293 (1%)
Strand=Plus/Plus
Query 1 ATGAGAGCTCGCGGGTATCAACGAGCTCCGTCAATGGAGGAACCAACGGAGA-T-TCCGA 58
|||||| ||||||||||||||||||||||||||||| || ||||||| ||| | |||||
Sbjct 1 ATGAGACCTCGCGGGTATCAACGAGCTCCGTCAATGCAGAAACCAAC--AGATTATCCGA 58
Query 59 CGGATAAGACGCTTCATCCAAATTACCCATTTCTGATGTCCTCACATGGTCTCAAGTCCT 118
||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 59 CGGATAAGACGCTTCATCCGAATTACCCATTTCTCATGTCCTCTCATGGTCTCAAGTCCT 118
Query 119 TTGAAACGgacgacgacgacgacgacTCAAACCTCGAGTCCAACGATCAATTCGCTTTCA 178
||||| |||||||||| ||||||||||| | ||| ||||||||||||||||||||||
Sbjct 119 TTGAATCGGACGACGAAGACGACGACTCCGA-CTC--CTCCAACGATCAATTCGCTTTCA 175
Query 179 GTATCAGCACAGACTTGCTTGTCGATGTCAAAGACGTATCCATAGAGGAAGTAATCGGCG 238
||||| |||||| ||||||||||||||||||||| |||| |||| ||| | |||||||
Sbjct 176 CTATCAACACAGAGTTGCTTGTCGATGTCAAAGACATATCTATAGGGGACTTCATCGGCG 235
Query 239 AAGGTTCATCTTCTA-TAGTCTACAAAGGATTGTTCATGAGATTTATCCCTGTGTCTGTG 297
|||||||||| |||| | ||||||| ||||||||||| |||| || ||||||||||||||
Sbjct 236 AAGGTTCATCATCTACT-GTCTACAGAGGATTGTTCAGGAGAGTTGTCCCTGTGTCTGTG 294
Query 298 AAGATATTCCAGCCTAAAAGAACATCTGCTGTAAGCATTGAGCAGAAGAAGAAGTTTCAA 357
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 295 AAGATATTCCAGCCTAAAAGAACATCTGCTTTAAGCATTGAGCAGAGGAAGAAGTTTCAG 354
Query 358 AGAGAGGTTTTGCTGCTTTCCAAGTTTAAACATGAAAACATTGTGCAGTTCATTGGGGCG 417
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 355 AGAGAGGTTTTGCTGCTTTCCAAGTTTAGACATGAAAACATTGTGCGGTTCATTGGGGCG 414
Query 418 TGCATAGAACCAAAGTTGATGATAATTACTGAACTCATGGAAGGCAATACTCTTCAGAAG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TGCATAGAACCAAAGTTGATGATAATTACTGAACTCATGGAAGGCAATACTCTTCAGAAG 474
Query 478 TTTATGCTGAGTACTCGTCCAAAGCCTCTTGATCTGAAGCTCTCGATTAGCTTTGCATTG 537
|||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 475 TTTATGTTGAGTGTTCGTCCAAAGCCTCTTGATCTGAAGCTCTCCATTAGCTTTGCGTTG 534
Query 538 GATATTGCTCGGGGAATGGAGTTCTTGAATGCAAATGGCATCATTCATCGCGATTTGAAG 597
||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 535 GATATTGCTCGGGGAATGGAGTTCTTGAATGCAAATGGCATTATTCACCGAGATTTGAAA 594
Query 598 CCAAGTAATATGCTCTTAACAGGTGATCAGAAACGTGTAAAGTTGGCTGATTTTGGACTT 657
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 595 CCAAGTAATATGCTCTTAACAGGTGATCAGAAACATGTAAAGTTGGCTGACTTTGGACTT 654
Query 658 GCTAGAGAGGAGACTAAAGGTTTCATGACCTGTGAGGCTGGTACATACAGATGGATGGCT 717
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 655 GCTAGAGAGGAGACTAAAGGTTTCATGACCTTTGAGGCTGGTACATACAGATGGATGGCT 714
Query 718 CCAGAGCTATTCAGCTATGACCCACTTCAAATTGGCGAAAAGAAACACTACGATCATAAG 777
|||||| |||||||||||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 715 CCAGAGTTATTCAGCTATGACACGCTTGAAATTGGCGAAAAGAAACACTACGATCATAAG 774
Query 778 GTGGACGTTTACAGTTTCGCCATTGTTTTCTGGGAGTTACTTACCAACAAAACCCCATTC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GTGGACGTTTACAGTTTCGCCATTGTTTTCTGGGAGTTACTTACCAACAAAACCCCATTC 834
Query 838 AAAGGAAAGAACAACATCTTTGTAGCTTATGCTGCCAGCAAAAACCAGAGACCAAGTGTG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 AAAGGAAAGAACAACATCTTTGTAGCTTATGCTGCCAGCAAAAACCAGAGACCAAGTGTG 894
Query 898 GAAAATCTTCCAGAAGGAGTTGCTTCTATCCTGCAATCATGCTGGGCAGAGGATCCTGAC 957
|| |||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||
Sbjct 895 GAGAATCTTCCAGAAGGCGTTGTTTCTATCCTGCAATCATGCTGGGCAGAGAATCCTGAC 954
Query 958 GCTCGTCCTGAGTTTAAAGAGATTACAGT-TTCACTAACAAACTTGCTCAGAAGCTTAAG 1016
|||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct 955 GCTCGTCCTGAGTTTAAAGAAATTACA-TATTCACTAACAAACTTGCTCAGAAGCTTAAG 1013
Query 1017 CTCAGACACTGATGCCACTTCATCCAATAGCAAAACCAATATAGCTACCGAGGATTCAAC 1076
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1014 CTCAGACACTGATGCTACTTCATCCAATAGCAAAGCCAATATAGCTACCGAGGATTCAAC 1073
Query 1077 AAGCAGTCTGGTTCAAGAACGTGTTGTCTGTGATTGTCCCGGACTAAAGATGACCAAGAC 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1074 AAGCAGTCTGGTTCAAGAACGTGTTGTCTGTGATTGTCCCGGACTAAAGATGAGCAAGAC 1133
Query 1137 GAAGAAGCTGAAGAAGAAGACGAATAAAGTGATGAATATGATCGTTCCTTTTCTCAGGAT 1196
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||
Sbjct 1134 GAAGAAGCTGAAGAAGAAGACGAATAAACTGATGAATATGATCGTCCCTTTTCTCAAGAT 1193
Query 1197 CTTCAAAAGTTGTATGTCCAAGTGATGGAAGTAGAAACTCT--GGTAAAAGATAAAAGGT 1254
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1194 CTTCAAAAGTTGTATGTCCAAGTGATGGAAGTAGAAACTCTCTGGTAAAAGATAAAAGGT 1253
Query 1255 ATAGCAATACGAACTTGTCAGAGTAAAACGAAA 1287
||||||||||||||| | |||||||||||||||
Sbjct 1254 ATAGCAATACGAACTCGACAGAGTAAAACGAAA 1286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66013716675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5