BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496934
Length=1743
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66675.1 | Symbols: | Protein of unknown function (DUF677) ... 2364 0.0
> AT5G66675.1 | Symbols: | Protein of unknown function (DUF677)
| chr5:26615083-26616990 REVERSE LENGTH=1827
Length=1827
Score = 2364 bits (1280), Expect = 0.0
Identities = 1609/1756 (92%), Gaps = 69/1756 (4%)
Strand=Plus/Plus
Query 45 CCACAATCAATCCCTCTCCTTCACCA----CTCTTTGACTCTCAGAGTAACTACGATTTC 100
|||||||| ||||||||||||||||| |||||||||| |||||||||||| ||||||
Sbjct 77 CCACAATCCATCCCTCTCCTTCACCACTCTCTCTTTGACTTTCAGAGTAACTAAGATTTC 136
Query 101 AGCTCAA--TCTTATCTCTTCCGGATCCACATCGATTTTCCAGGTACTTACTGATACCGA 158
||||||| ||||||||||||||||||| |||||||||| ||||||||||| ||| ||||
Sbjct 137 AGCTCAATCTCTTATCTCTTCCGGATCCTCATCGATTTT-CAGGTACTTACCGAT-CCGA 194
Query 159 TCTCACTTTCAATTCCAGCCTCCTGCAACGAAAGCTCTTGTCTTGATTCTCTCACTCTGC 218
||||| ||| | ||||||||||| ||||||||| ||| ||||||||||||| ||||||||
Sbjct 195 TCTCAGTTTTAGTTCCAGCCTCCCGCAACGAAAACTC-TGTCTTGATTCTCGCACTCTGC 253
Query 219 TTCCTATAGACCAGATTTTCCTCAGATCATCAAGTACGATTTCTGTTTCTGTAGGTTCTT 278
|||||| |||||||||||| |||| | |||||||| |||||||||||||||||||||||
Sbjct 254 TTCCTACAGACCAGATTTTTCTCA-A--ATCAAGTAAGATTTCTGTTTCTGTAGGTTCTT 310
Query 279 --C--------------------GCTCAAAACACCGGTTCTGGATTCTGTTTGTCATAAA 316
| ||||||||||| ||||||||||||| |||||||||||
Sbjct 311 CACTAGTTTTGTTTGGAAAGTGTGCTCAAAACACTGGTTCTGGATTCTATTTGTCATAAA 370
Query 317 AGTGAACATCTTTTGGGGTTCTGATTAATCGT--C--CCTGAGACAGTCCATGTTTCTTG 372
||| |||||||||| || ||| ||||||||| | |||||||||||||||||||||||
Sbjct 371 AGTCAACATCTTTT-TGGCTCTTATTAATCGTCCCTACCTGAGACAGTCCATGTTTCTTG 429
Query 373 GAATCTTCTCCAAAACCATGGAAGACAAATCAAATTCCAGCAGGAACAG---C-AC-TC- 426
|||| |||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 430 GAATGTTCTCCAAAACCATGGAAGACAAATCAAATTCCAGCAGGAACAGAACCAACAACA 489
Query 427 CACCACCTCTTCAACAGATCCGAACCGACATGGGTTCCTTATACTCTGCAGATCTTACTG 486
| |||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 490 CTCCACTTCCTCAACAGATCCGAACAGACATGGGTTCCTTATACTCTGCAGATCTTACTG 549
Query 487 CTTACAAGTCAGCTTGTAGAGAAGATCCAGATTTACAATCCTTCGATTCCTCTCTTCACC 546
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 CTTACAATTCAGCCTGTAGAGAAGATCCAGATTTACAATCCTTCGATTCCTCTCTTCACC 609
Query 547 AACGCACCAACCGAGTCATCAGCTCGCTAGCCTCTGGTGC-CGAAACTCGGTCTTTATCC 605
||||||||||||| ||||||| |||||| ||||||||||| | |||||||||||||||||
Sbjct 610 AACGCACCAACCGGGTCATCAACTCGCTCGCCTCTGGTGCTC-AAACTCGGTCTTTATCC 668
Query 606 TTTGACGCCCTCATTGAAGTCTCAGGGTGTCTTCTCGAAATGAACCAAGAGGTCGTTAGG 665
|||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 669 TTTGACGCGCTCATTGAAGTCTCAGGGTGTCTTCTTGAAATGAACCAAGAAGTCGTTAGG 728
Query 666 TTTATCATTGAAAGCAAAGAAGATG-CGTGGGACAACAAAGATTTGACATGTTTGGTCAA 724
||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 729 TTTATCATTGAAAGCAAAGAAGACGTC-TGGGACAACAAAGATTTGACATGTTTGGTCAA 787
Query 725 TGCGTATTTTGATAGTAGCATCAAGACCTTAGATTTCTGCAATGCTGTTGATAATTGTGT 784
||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 788 TGCTTATTTTGATAGTAGCATCAAGACTTTAGATTTCTGCAATGCTGTTGATAACTGTGT 847
Query 785 TAAACGTGCGAGGATAGGCCAAATGCTTTTACAGTTTGCGCTTAAGCAATTTGAGATGGA 844
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 848 TAAACGCGCGAGGATAGGCCAAATGCTCTTACAGTTTGCGCTTAAGCAGTTTGAGATGGA 907
Query 845 GTCATCAGGGAACAACAAATCCGTGGAGCCGGGTACTACTAATAAGTACGCCAAAACTTT 904
||||||||||| ||||||||||||||| ||||| ||||||||||||||| ||||||||
Sbjct 908 GTCATCAGGGAGCAACAAATCCGTGGAACCGGG---TACTAATAAGTACGCGAAAACTTT 964
Query 905 GGAAGAGCTTAACAAGTTTAAGGCTTCTGCTGATCCGTTTGATGGAGATTTCTTCATGTT 964
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 965 GGAAGAGCTTAACAAGTTTAAGGCTTCTGGTGATCCGTTTGATGGAGATTTCTTCATGCT 1024
Query 965 GTTTGAGTCGGTATACGAGCAGCAGGTTATGCTTCTGGAGATACTTCATAAGCAAAAGAG 1024
| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 GCTTGAGTCTGTTTACGAGCAGCAGGTTATGCTTCTGGAGATACTTCATAAGCAAAAGAG 1084
Query 1025 GAAGCTTGATAAAAAGCTTAAGAACATAAAGCACTGGAAGAAAATCTCTAATGTGGTCTT 1084
||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| ||
Sbjct 1085 GAAGCTTGATAAAAAGCTTAAGAACATAAAGTATTGGAAGAAAATCTCGAATGTGGTTTT 1144
Query 1085 CGTGACTGCGTTTGTCTCTGTTTTGATCTTCTCTGTTGTAGCAGCCGCTGTGGCTGCACC 1144
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1145 TGTGACTGCGTTTGTCTCTGTTTTGATCTTCTCTGTTGTAGCAGCCGCTGTTGCTGCACC 1204
Query 1145 GCCAGTTGTGACTGCGGTTGCAGCTTCGTTAGCGGTTCCAGTTGGGTCAATAGGGAAATG 1204
|||||||||||||||| |||||||| |||||||||||||| |||| ||||||||||||||
Sbjct 1205 GCCAGTTGTGACTGCGCTTGCAGCTGCGTTAGCGGTTCCAATTGGATCAATAGGGAAATG 1264
Query 1205 GTGTAATCATCTTTGGAATAAGTATGAAACGGCAGTGAAAGGACAGAAAGATATTGTTCT 1264
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1265 GTGTAATCATCTTTGGAAGAAGTATGAAACGGCTGTGAAAGGACAGAAAGATATTGTTCT 1324
Query 1265 GTCGATGAGGATTGGTGCTTATGTCACCATGAAAGACATGGATAACATTCGAGTCCTTAT 1324
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| | | |
Sbjct 1325 GTCGATGAGGATTGGTGCTTATGTTACCATGAAAGACATGGATAACATTCGAGTACATGT 1384
Query 1325 AGATAAGTTGAAGATTGAGATGGAATCGATGATGCAAAAGGTTGATTTTGCGCTCAAGGA 1384
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1385 AGATAAGTTGAAGATTGAGATGGAATCGATGATGCAAAAGGTTGATTTTGCACTCAAGGA 1444
Query 1385 GAAAGAAGAAGAAGTGGCTGTGAGGCTTTCGATGCACGAGATCAGCAAGAAGTTTGATGT 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 GAAAGAAGAAGAAGTGGCTGTGAGGCTTTCGATGCACGAGATCAGCAAGAAGTTTGATGT 1504
Query 1445 TTTCACAGAGAGAATCGAGGAAGTGGGTGAAAACGCGACTAAGTGTAGCAAAAATATCAC 1504
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1505 TTTCACAGAGAGAATCGAGGAAGTGGGTGATAACGCGACTAAGTGTAGCAAAAATATCAC 1564
Query 1505 ATTGGCGAGAACAATCGTTCTAAGGCACATTCTAAGTTTCCCCTCAAGTTCAGATTCAGA 1564
||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 1565 ATTGGCGAGAACAATCGTTCTGAGGCACATTCTTAGCTTCCCCTCAAGTTCAGATTCAGG 1624
Query 1565 GCAAGGAAACTTGATTGAGACTATCACATTGTGAG-G---GATA----G--------G-T 1607
||||||||||||||||||| ||||||||||||||| | |||| | | |
Sbjct 1625 GCAAGGAAACTTGATTGAGGCTATCACATTGTGAGAGATAGATACATAGCATAAACTGGT 1684
Query 1608 GGTTATTGAGAAGAGGTTCTGTGGTATGTCACATAGCGCTTATATAATGTTATGTGTAGC 1667
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1685 GGTTTTTGAGAAGAGGTTCTGTGGTATGTCACATAACGCTTATATAATGTTATGTGTAAC 1744
Query 1668 AGCTCTTGTATACATCTGTATCTGTTTAGCACAGCACAATGTATTACTCAATTGGAAATA 1727
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1745 AGCTCTTGTATACATCTGTATCTGTTTAGCACAGCATAATGTATTACTCAATTGGAAATA 1804
Query 1728 AAATTCAAAGTCGATA 1743
||||||| |||| |||
Sbjct 1805 AAATTCATAGTCTATA 1820
Score = 78.7 bits (42), Expect = 2e-13
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 1 GAAGACAAGTCAAAGACAGAAGAAGCAACTCAGTTGTTTCTCTCC 45
|||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 15 GAAGACAAGTCAAAGATAGAAGAAGCAACTCAGTTGTTTCTCTCC 59
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86194335765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5