BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496938
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66650.1 | Symbols: | Protein of unknown function (DUF607) ... 1814 0.0
> AT5G66650.1 | Symbols: | Protein of unknown function (DUF607)
| chr5:26603003-26604376 REVERSE LENGTH=1286
Length=1286
Score = 1814 bits (982), Expect = 0.0
Identities = 1093/1145 (95%), Gaps = 14/1145 (1%)
Strand=Plus/Plus
Query 17 AAAACCAATTTTGTTCTTCTTC-TTCATT-TTTGTTCTTTCTA-TTTCTAACGTAGCTTG 73
|||||||||||||||||||||| || ||| ||| ||| ||| | ||| ||||||| ||||
Sbjct 50 AAAACCAATTTTGTTCTTCTTCTTTGATTCTTTTTTCCTTC-ATTTTTTAACGTATCTTG 108
Query 74 AGAGATCGACGATGTCGTCGAAGAAATCCCTAGTTCAAAGTCTCTTCAACATTTCCAAAA 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 AGAGATCGACGATGTCGTCGAAGAAATCCCTAGTTCAAAGTCTCTTCAACATTTCCAAAA 168
Query 134 CCTACTCCAGGATTTCGGGTCTTACCCGAATGCGTCCGACCAAATCCGGC---ATTCCTC 190
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 169 CCTACTCCAGGATTTCTGGTCTTACCCGAATGCGTCCGACCAAATCCGGCGGCATTCCTC 228
Query 191 CCGACGCCGGAGATTCTGGAATCCGCCGCAGATTTCTCCACAAGAGGGCATTTTTCTCGC 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 CCGACGCCGGAGATTCTGGAATCCGCCGCAGATTTCTCCACAAGAGGGCATTTTTCTCGC 288
Query 251 CGGAGTTAGTTCCTAAAGGTGGTAATTTGATGGAGAAACTCAGGGAATTGAGTTTGTCCA 310
||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 289 CGGAGATAGTTCCTAAAGGTGGTAACTTGATGGAGAAACTCAGGGAATTGACTTTGTCCA 348
Query 311 ATAATAATCGTATCCGTCTTGACGAGATGTTACCGCCACCTTCGCCGGCGAAATCATCAC 370
||||||||||||| | || ||||||||||||||||||||||||||| |||||||||||
Sbjct 349 ATAATAATCGTATTAGACTCGACGAGATGTTACCGCCACCTTCGCCGAAGAAATCATCAC 408
Query 371 CGGAGTTTTTTCCGGCGGTCACGGTGGAAGACGTGAAGAAGCTGATGAGAGCAGCGGAAA 430
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 409 CGGAGTTTTTCCCGGCGGTCACGGTGGAAGACGTGAAGAAGCTCATGAGAGCAGCGGAAA 468
Query 431 TGGAGATGGTGAAATCGAGGCTGAGAGAGATTGGGAAGAACTGGGTTCCTTATTCGGAGT 490
||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 469 TGGAGCTGGTGAAATCGAAGCTGAGAGAGATTGGCAAGAACTGGGTTCCTTATTCGGAGT 528
Query 491 TTGTTCGGGTCTGCGGGGAAAACAGTTCGGATCCTGAACAAGGTAACCGGGTCGCGAATA 550
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 529 TTGTTCGGGTCTGCGGAGAATACAGTTCGGATCCTGAACAAGGTAACCGGGTCGCGAATA 588
Query 551 TGCTTGACGAAGCTGGAAACGTCATCGTTTTGGGAAAATTCGTCTGCCTTAAACCTGAAG 610
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 589 TGCTTGACGAAGCTGGAAACGTCATCGTTTTGGGAAAACTCGTCTGCCTTAAACCCGAAG 648
Query 611 AGCTAACAAGCGCCATGGCTGGTCTGATCCCGACACTCGAACCCACTCTCGACGCCGCGA 670
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||
Sbjct 649 AGCTAACAAGCGCCATGGCTGGTCTGATTCCGACACTCGAACCCAGTCTCGACGCCGAGA 708
Query 671 CAAGACAAGAGTTCGAACAACTTGAGATTATAAAATCAGATATCGACAAAAGAGCCGATG 730
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 709 CAAGACAAGAGTTCGAACAACTTGAGATCATAAAATCAGATATCGACAAAAGAGCCGATG 768
Query 731 ATCTGGTTCGAAAAGAATTATGGGCCGGATTAGGCCTAATTATGGCCCAAACAATTGGAT 790
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 769 ATCTGGTTCGAAAAGAATTATGGGCCGGATTAGGCCTAATAATGGCCCAAACAGTTGGAT 828
Query 791 TTTTTAGGCTGACGTTTTGGGAACTGTCGTGGGACGTGATGGAACCCATATGCTTCTACG 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 TTTTTAGGCTGACGTTTTGGGAACTGTCGTGGGACGTGATGGAACCCATATGCTTCTACG 888
Query 851 TAACTTCGACTTATTTCATGGCTGGTTACGCCTTCTTCCTCCGAACTTCAAAGGAACCTT 910
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TAACTTCGACATATTTCATGGCTGGTTACGCCTTCTTCCTCCGAACTTCAAAGGAACCTT 948
Query 911 CCTTTGAAGGGTTTTACAAAAGCCGGTTCGAGACGAAGCAGAAACGTTTGATTAAAATGC 970
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 CCTTTGAAGGTTTTTACAAAAGCCGGTTCGAGACGAAGCAGAAACGTTTGATTAAAATGC 1008
Query 971 TTGATTTCGATATCGATCGCTATACCAAGTTACAGAAGATGCATCGTCCAGACTTT-ACT 1029
||||||||||||||||||| | ||||||| |||||||||||||||||||| | ||| |||
Sbjct 1009 TTGATTTCGATATCGATCGATTTACCAAGCTACAGAAGATGCATCGTCCAAA-TTTGACT 1067
Query 1030 AAATCTGGTCGTTGTTGATCGTAATTCTTTTCTTCTTCTTTTTCCTAAATCGGATACTAA 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1068 AAATCTGGTCGTTGTTGATCGTAATTCTTTTCTTCTTCTTTTTCCTAAATCGGATGCTAA 1127
Query 1090 -TTAAATGTATAAACGACT-ACAATTTTCGTAGAGAATAAATTAGTTTTAGAGGGATaaa 1147
|||| |||||| |||||| | |||||||||||||||||| |||||||||||||||||||
Sbjct 1128 ATTAA-TGTATAGACGACTGA-AATTTTCGTAGAGAATAA-TTAGTTTTAGAGGGATAAA 1184
Query 1148 aaaaa 1152
|||||
Sbjct 1185 AAAAA 1189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58784838195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5